FFCP PHASE1:Hg19::chr4:178231084..178231093,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55247 | |EntrezGene=55247 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24573 | |HGNC=24573 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAV1 | |UniProt=D6RAV1 | ||
|association_with_transcript=27bp_to_ENST00000513321_5end | |association_with_transcript=27bp_to_ENST00000513321_5end | ||
|cluster_id=chr4:178231084..178231093,+ | |||
|coexpression_cluster_id=C4397 | |||
|description=CAGE_peak_4_at_NEIL3_5end | |description=CAGE_peak_4_at_NEIL3_5end | ||
|id=chr4:178231084..178231093,+ | |id=chr4:178231084..178231093,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.60e-07!679;CL:0000004!1.60e-07!679;CL:0000255!1.60e-07!679;CL:0000012!1.62e-07!682 | |ontology_enrichment_celltype=CL:0000548!1.60e-07!679;CL:0000004!1.60e-07!679;CL:0000255!1.60e-07!679;CL:0000012!1.62e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000077;6.18e-11;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,7.83e-11,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.94e-29!235;DOID:14566!4.40e-28!239;DOID:2531!3.08e-21!51;DOID:0060083!3.08e-21!51;DOID:0050686!7.92e-16!137;DOID:1240!1.29e-14!39;DOID:0050687!3.47e-10!143;DOID:8692!2.72e-09!31;DOID:305!4.22e-08!106;DOID:0060058!1.21e-07!10 | |ontology_enrichment_disease=DOID:162!2.94e-29!235;DOID:14566!4.40e-28!239;DOID:2531!3.08e-21!51;DOID:0060083!3.08e-21!51;DOID:0050686!7.92e-16!137;DOID:1240!1.29e-14!39;DOID:0050687!3.47e-10!143;DOID:8692!2.72e-09!31;DOID:305!4.22e-08!106;DOID:0060058!1.21e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.91e-22;10!DOID:2531;7.23e-19;51!DOID:0060083;7.23e-19;51!DOID:1240;8.29e-16;39!DOID:8692;5.01e-12;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.69e-33,51;DOID:0060083,1.69e-33,51;DOID:0060058,1.15e-22,10;DOID:1240,3.25e-21,39;DOID:162,6.33e-18,235;DOID:14566,2.38e-17,239;DOID:0050686,6.39e-17,137;DOID:8692,1.37e-12,31 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.67e-08;2!UBERON:0005058;6.67e-08;2!UBERON:0009113;6.67e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.75e-09,4;UBERON:0005058,6.75e-09,4;UBERON:0009113,6.75e-09,4;UBERON:0003295,6.75e-09,4;UBERON:0005562,6.75e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0,0,0.684372125364421,0.251085279189606,0.0764134057479513,0.328402357799783,0.0787107813136792,0,0,0,1.83884244895785,0,0,1.47187681102573,2.55904618477359,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.167186495390678,0,0,0,0.445641827540694,0,0,0,0.768547918354051,0.260118695119756,0.493313713811028,0.552700035571697,0.289803085735052,0,0,0,1.0197840842781,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,0,0,0,0,0.945348171640679,0.221729397462564,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.573673241497627,0,0.560677600142307,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.352303495931295,0.647491777472526,0,0.204154171254893,0.122834317311768,0,0,0,0.910161361938026,0,0.168336113954066,0.250237039743928,0,0,0.30648779579902,0.150238058906597,0.226864366320042,0.89694817844431,0,0,0.600182192168805,0.309157587715317,0.772921620136887,0.37223371266318,0.843881661206331,0.779496041289589,0.252433774244115,0,0,0.355009592516614,0.503760491138201,0.508681776931463,0,0,0,0.121973706129595,0,0,0,0.504641701751257,0.36497735907583,0,0,0,0,0,0.709840800239063,0.674338760312407,0.241011029883482,0.220587945464788,0.217879444092406,0.71181185733329,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,0,3.97316789473185,0,0,0,0,0.201057944823262,0,0,0,0,0.34779121492523,0,0.144366447761074,0,0,0,0,0,0,0.445893486866185,0,0,0,0.358234090811393,0.290633938513962,0,0.985326475791887,0,0,0,0,0.825472625798197,0,0,0,0.514137463516618,0.600686115687835,0,0.224262168690721,0.43596006883328,0.66004457238855,0.129271715757778,0,0,0.26593811658487,1.04007436911366,0.257207374262142,0,0.799266537048298,0.142977993658148,0,0,0.65147236858747,0,0.791951872933429,0,0,0.099972991182057,0,0.502257091432126,0,0,0,0,0,0.205476322550383,0.358121926479791,25.2191573985436,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0.117141414992713,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.256278298511402,0.511707249066704,0,0,0,0.355123450626254,0.0821271560138091,0,0.232420756919918,0.120859449591622,0,0,0.459257792658427,0,0,0,0,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0,0,0,0,0.877039506583738,0.261435451024901,0.256450125116389,0,0,0,1.00726411300178,1.81520899825294,0.574265537996172,0,3.21367859688319,0.096670718292122,0,0,0.413509717453592,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0.762520775695299,0,0,0,0,0.719489830333259,0.274537029736055,0.589062011728432,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.430234056612155,0,0,0.354761064070598,0,0.329294892959902,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,1.11481905075431,0.721346064882224,4.62421981764692,0.797131363644112,0.199579371432817,0.383010740264733,0.211673582723883,0.324621940274555,0.561594356226918,0.456469358066384,9.08743395483535,2.50634477090067,0,2.08764497634809,2.42159648629257,8.0910785161162,3.09154810280188,3.07240764308458,3.13146551049382,4.17122854279771,3.12620952643264,0.835218521685727,0,0.270455678475983,0.66614393599564,0,0.18714054040822,0,0,2.11742430127209,0,0,0,0,0,0,0,4.44970460412251,0.211125408127993,0,1.65770349318689,0.251932747854276,0.20453736500431,0.123084805461069,0,0.449341755736634,1.25314822272926,1.02314474045374,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0.520874984799877,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0,0.569710279235006,0.23056390438806,0.0897576444097721,0.217294743844016,0,0.183195186803725,0,11.241262801531,0,0.332423363800313,0,0,0,0.37950746544837,0.158936578980379,1.26598838716816,0.326465616318295,0,0.216388639742091,0,0,0,1.18608451472249,0.494255755786011,0.522109747527277,0,0,0,1.094728735294,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0.313932918407225,0,1.42304773014896,0,0,0,2.43765778425127,0,0.51595809741485,0.483781656445426,0.365446585430928,0.410577285266046,0,0,0,0.548167698587004,0.397429223405979,0,0.195551382734803,0.400794101257669,0,0.599428828746391,0,0.572682980829578,0.171594997861965,0,0.124252535565433,0.471388069233591,0.543616824294456,0.523014231561666,7.44586988745149,0.288950589901519,0,0,0,0,0.525774708558629,0,0,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0.164831716762333,0.202210631562555,0,0.677386656526276,0,0,0.482259445395058,0.412618309791701,0.83088067605837,0,0,0,0,0,0.0524545881349981,0,1.07572403599707,0.959575986597226,0,0,0,0,0,0,0,0.082092520749339,0.68155208714168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| ||
|short_description=p4@NEIL3 | |short_description=p4@NEIL3 | ||
}} | }} |
Latest revision as of 22:55, 16 September 2015
Short description: | p4@NEIL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NEIL3_5end |
Coexpression cluster: | C4397_acute_chronic_NK_Hodgkin_thymus_glioblastoma_non |
Association with transcript: | 27bp_to_ENST00000513321_5end |
EntrezGene: | NEIL3 |
HGNC: | 24573 |
UniProt: | D6RAV1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 7.83e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.75e-09 | 4 |
hemolymphoid system gland | 6.75e-09 | 4 |
thymic region | 6.75e-09 | 4 |
pharyngeal gland | 6.75e-09 | 4 |
thymus primordium | 6.75e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.69e-33 | 51 |
immune system cancer | 1.69e-33 | 51 |
lymphoma | 1.15e-22 | 10 |
leukemia | 3.25e-21 | 39 |
cancer | 6.33e-18 | 235 |
disease of cellular proliferation | 2.38e-17 | 239 |
organ system cancer | 6.39e-17 | 137 |
myeloid leukemia | 1.37e-12 | 31 |