FFCP PHASE1:Hg19::chr4:185395672..185395710,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:185395672..185395710,- to FFCP PHASE1:Hg19::chr4:185395672..185395710,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3660 | |EntrezGene=3660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6117 | |HGNC=6117 | ||
|TSSclassifier=strong | |||
|UniProt=D6R9N5,D6RB34 | |UniProt=D6R9N5,D6RB34 | ||
|association_with_transcript=0bp_to_ENST00000504340,ENST00000505316,ENST00000512020_5end | |||
|cluster_id=chr4:185395672..185395710,- | |||
|description=CAGE_peak_1_at_IRF2_5end | |||
|id=chr4:185395672..185395710,- | |||
|ontology_enrichment_celltype=CL:0000766!8.48e-13!76;CL:0002031!3.24e-12!124;CL:0000738!3.46e-12!140;CL:0002087!7.68e-12!119;CL:0000839!9.07e-12!70;CL:0002194!9.35e-10!63;CL:0000576!9.35e-10!63;CL:0000040!9.35e-10!63;CL:0000559!9.35e-10!63;CL:0000557!1.30e-09!71;CL:0002057!1.85e-09!42;CL:0002009!1.26e-08!65;CL:0000860!1.33e-08!45;CL:0002032!4.20e-08!165;CL:0000837!4.20e-08!165;CL:0000037!2.20e-07!172;CL:0000566!2.20e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-09;33!CL:0002057;1.48e-09;33!CL:0000473;4.82e-09;39!CL:0000234;4.82e-09;39!CL:0000576;2.96e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.25e-14,72;CL:0002031,7.28e-13,120;CL:0000839,8.88e-13,66;CL:0000738,8.95e-13,136;CL:0002087,1.71e-12,115;CL:0002194,1.09e-10,59;CL:0000576,1.09e-10,59;CL:0000040,1.09e-10,59;CL:0000559,1.09e-10,59;CL:0000473,1.39e-10,48;CL:0000234,1.39e-10,48;CL:0000557,1.90e-10,67;CL:0000860,1.85e-09,42;CL:0002057,1.85e-09,42;CL:0002009,1.93e-09,61;CL:0002032,1.78e-08,161;CL:0000837,1.78e-08,161;CL:0000037,1.01e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.17e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.27e-32!115;UBERON:0002193!1.55e-15!112;UBERON:0002390!7.01e-15!102;UBERON:0003061!7.01e-15!102;UBERON:0002405!4.81e-12!115;UBERON:0002371!5.34e-09!80;UBERON:0001474!1.16e-07!86;UBERON:0004765!3.36e-07!101;UBERON:0001434!3.36e-07!101;UBERON:0001049!9.63e-07!57;UBERON:0005068!9.63e-07!57;UBERON:0006241!9.63e-07!57;UBERON:0007135!9.63e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.36e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-31,114;UBERON:0002193,2.14e-16,108;UBERON:0002390,8.89e-16,98;UBERON:0003061,8.89e-16,98;UBERON:0002405,6.10e-13,93;UBERON:0002371,1.03e-09,76;UBERON:0004765,2.14e-08,90;UBERON:0001474,3.01e-08,82;UBERON:0001434,4.10e-08,100 | |||
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| ||
|short_description=p1@IRF2 | |||
}} | }} |
Latest revision as of 01:34, 17 September 2015
Short description: | p1@IRF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IRF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000504340, ENST00000505316, ENST00000512020_5end |
EntrezGene: | IRF2 |
HGNC: | 6117 |
UniProt: | D6R9N5D6RB34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.25e-14 | 72 |
hematopoietic lineage restricted progenitor cell | 7.28e-13 | 120 |
myeloid lineage restricted progenitor cell | 8.88e-13 | 66 |
leukocyte | 8.95e-13 | 136 |
nongranular leukocyte | 1.71e-12 | 115 |
monopoietic cell | 1.09e-10 | 59 |
monocyte | 1.09e-10 | 59 |
monoblast | 1.09e-10 | 59 |
promonocyte | 1.09e-10 | 59 |
defensive cell | 1.39e-10 | 48 |
phagocyte | 1.39e-10 | 48 |
granulocyte monocyte progenitor cell | 1.90e-10 | 67 |
classical monocyte | 1.85e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.85e-09 | 42 |
macrophage dendritic cell progenitor | 1.93e-09 | 61 |
hematopoietic oligopotent progenitor cell | 1.78e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-08 | 161 |
hematopoietic stem cell | 1.01e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.13e-31 | 114 |
hemolymphoid system | 2.14e-16 | 108 |
hematopoietic system | 8.89e-16 | 98 |
blood island | 8.89e-16 | 98 |
immune system | 6.10e-13 | 93 |
bone marrow | 1.03e-09 | 76 |
skeletal element | 2.14e-08 | 90 |
bone element | 3.01e-08 | 82 |
skeletal system | 4.10e-08 | 100 |