FFCP PHASE1:Hg19::chr8:145640636..145640647,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55630 | |EntrezGene=55630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=17129 | |HGNC=17129 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=110bp_to_uc003zco.2_5end | |association_with_transcript=110bp_to_uc003zco.2_5end | ||
|cluster_id=chr8:145640636..145640647,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_11_at_SLC39A4_5end | |description=CAGE_peak_11_at_SLC39A4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002171!5.57e-11!1;UBERON:0006518!5.57e-11!1;UBERON:0008949!5.57e-11!1;UBERON:0000101!5.57e-11!1;UBERON:0002167!5.57e-11!1;UBERON:0001882!1.77e-10!1;UBERON:0005403!1.77e-10!1;UBERON:0000160!1.11e-08!27;UBERON:0004119!2.08e-07!169;UBERON:0000925!2.08e-07!169;UBERON:0006595!2.08e-07!169;UBERON:0004921!3.16e-07!129;UBERON:0004185!3.16e-07!129;UBERON:0001007!6.22e-07!155;UBERON:0001555!6.22e-07!155;UBERON:0007026!6.22e-07!155;UBERON:0007023!8.82e-07!115 | |ontology_enrichment_uberon=UBERON:0002171!5.57e-11!1;UBERON:0006518!5.57e-11!1;UBERON:0008949!5.57e-11!1;UBERON:0000101!5.57e-11!1;UBERON:0002167!5.57e-11!1;UBERON:0001882!1.77e-10!1;UBERON:0005403!1.77e-10!1;UBERON:0000160!1.11e-08!27;UBERON:0004119!2.08e-07!169;UBERON:0000925!2.08e-07!169;UBERON:0006595!2.08e-07!169;UBERON:0004921!3.16e-07!129;UBERON:0004185!3.16e-07!129;UBERON:0001007!6.22e-07!155;UBERON:0001555!6.22e-07!155;UBERON:0007026!6.22e-07!155;UBERON:0007023!8.82e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002108;1.76e-71;4!UBERON:0000160;4.53e-55;17!UBERON:0005409;2.60e-43;22!UBERON:0004921;2.08e-26;33!UBERON:0001155;1.69e-18;9!UBERON:0000059;2.42e-15;11!UBERON:0002114;1.71e-14;2!UBERON:0001555;3.36e-12;54!UBERON:0001007;2.17e-07;81 | |ontology_enrichment_uberon_v019=UBERON:0002108;1.76e-71;4!UBERON:0000160;4.53e-55;17!UBERON:0005409;2.60e-43;22!UBERON:0004921;2.08e-26;33!UBERON:0001155;1.69e-18;9!UBERON:0000059;2.42e-15;11!UBERON:0002114;1.71e-14;2!UBERON:0001555;3.36e-12;54!UBERON:0001007;2.17e-07;81 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.56e-71,4;UBERON:0000160,4.53e-55,17;UBERON:0005409,2.01e-38,25;UBERON:0001155,1.76e-18,9;UBERON:0000059,2.51e-15,11;UBERON:0002114,1.60e-14,2;UBERON:0004921,6.01e-09,118;UBERON:0001007,2.16e-07,145;UBERON:0001555,2.16e-07,145;UBERON:0007026,2.16e-07,145;UBERON:0004119,9.48e-07,160;UBERON:0000925,9.48e-07,160;UBERON:0006595,9.48e-07,160 | |||
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|short_description=p11@SLC39A4 | |short_description=p11@SLC39A4 | ||
}} | }} |
Latest revision as of 01:52, 17 September 2015
Short description: | p11@SLC39A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SLC39A4_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 110bp_to_uc003zco.2_5end |
EntrezGene: | SLC39A4 |
HGNC: | 17129 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
small intestine | 1.56e-71 | 4 |
intestine | 4.53e-55 | 17 |
gastrointestinal system | 2.01e-38 | 25 |
colon | 1.76e-18 | 9 |
large intestine | 2.51e-15 | 11 |
duodenum | 1.60e-14 | 2 |
subdivision of digestive tract | 6.01e-09 | 118 |
digestive system | 2.16e-07 | 145 |
digestive tract | 2.16e-07 | 145 |
primitive gut | 2.16e-07 | 145 |
endoderm-derived structure | 9.48e-07 | 160 |
endoderm | 9.48e-07 | 160 |
presumptive endoderm | 9.48e-07 | 160 |