FFCP PHASE1:Hg19::chr20:52675557..52675561,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:52675557..52675561,-
|short_description=p4@BCAS1
|description=CAGE_peak_4_at_BCAS1_5end
|association_with_transcript=-298bp_to_HQ258323,HQ258554_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8537 | |EntrezGene=8537 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=974 | |HGNC=974 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-298bp_to_HQ258323,HQ258554_5end | |||
|cluster_id=chr20:52675557..52675561,- | |||
|coexpression_cluster_id=C1218 | |||
|description=CAGE_peak_4_at_BCAS1_5end | |||
|id=chr20:52675557..52675561,- | |||
|ontology_enrichment_celltype=CL:0000542!5.69e-34!53;CL:0000051!5.69e-34!53;CL:0000838!7.18e-33!52;CL:0000945!2.38e-26!24;CL:0000826!2.38e-26!24;CL:0000236!1.95e-14!14;CL:0000738!7.56e-13!140;CL:0002087!9.82e-13!119;CL:0000988!1.01e-11!182;CL:0000037!4.28e-11!172;CL:0000566!4.28e-11!172;CL:0002032!1.82e-09!165;CL:0000837!1.82e-09!165;CL:0002031!6.26e-09!124;CL:0000080!6.81e-09!6;CL:0000084!1.46e-07!25;CL:0000827!1.46e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.41e-23;24!CL:0000236;1.25e-15;13!CL:0000542;1.38e-14;53!CL:0000946;1.05e-07;1!CL:0000786;1.05e-07;1!CL:0000785;2.22e-07;1!CL:0000819;2.22e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.11e-23,24;CL:0000826,5.11e-23,24;CL:0000838,9.86e-23,52;CL:0000542,3.03e-22,53;CL:0000051,3.03e-22,53;CL:0000236,8.68e-20,14;CL:0000785,2.26e-13,2;CL:0000955,2.26e-13,2;CL:0000818,2.26e-13,2;CL:0000954,2.26e-13,2;CL:0000816,2.26e-13,2;CL:0002032,3.01e-09,161;CL:0000837,3.01e-09,161;CL:0000817,3.34e-09,3;CL:0000037,1.05e-08,168;CL:0002087,1.71e-08,115;CL:0000988,4.56e-08,177;CL:0002031,5.10e-08,120;CL:0000946,1.06e-07,1;CL:0000786,1.06e-07,1;CL:0000980,1.06e-07,1;CL:0000819,2.37e-07,1;CL:0000738,9.70e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;1.38e-14;53!CL:0000954;2.12e-13;2 | |||
|ontology_enrichment_disease=DOID:0060058!2.16e-14!10;DOID:162!3.11e-07!235;DOID:14566!7.98e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.85e-21;10!DOID:1036;4.73e-12;8!DOID:2531;3.64e-08;51!DOID:0060083;3.64e-08;51!DOID:630;1.20e-07;1!DOID:0050177;1.20e-07;1!DOID:0050427;1.20e-07;1!DOID:0060073;2.22e-07;1!DOID:8675;2.22e-07;1!DOID:0060060;4.74e-07;1!DOID:0060061;4.74e-07;1!DOID:8691;4.74e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.15e-21,10;DOID:2531,3.47e-12,51;DOID:0060083,3.47e-12,51;DOID:1036,6.05e-12,8;DOID:630,1.20e-07,1;DOID:0050177,1.20e-07,1;DOID:0050427,1.20e-07,1;DOID:0060073,2.37e-07,1;DOID:8675,2.37e-07,1;DOID:0060060,3.21e-07,1;DOID:0060061,3.21e-07,1;DOID:8691,3.21e-07,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;2.22e-07;1!UBERON:0001961;2.22e-07;1!UBERON:0001744;2.22e-07;1!UBERON:0001042;2.22e-07;1!UBERON:0001735;2.22e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.84e-07,1;UBERON:0001961,2.84e-07,1;UBERON:0001744,2.84e-07,1;UBERON:0001735,2.84e-07,1 | |||
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| ||
|short_description=p4@BCAS1 | |||
}} | }} |
Latest revision as of 02:19, 17 September 2015
Short description: | p4@BCAS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BCAS1_5end |
Coexpression cluster: | C1218_hairy_plasma_lymphoma_xeroderma_hereditary_mycosis_splenic |
Association with transcript: | -298bp_to_HQ258323, HQ258554_5end |
EntrezGene: | BCAS1 |
HGNC: | 974 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.11e-23 | 24 |
pro-B cell | 5.11e-23 | 24 |
lymphoid lineage restricted progenitor cell | 9.86e-23 | 52 |
lymphocyte | 3.03e-22 | 53 |
common lymphoid progenitor | 3.03e-22 | 53 |
B cell | 8.68e-20 | 14 |
mature B cell | 2.26e-13 | 2 |
pre-B-II cell | 2.26e-13 | 2 |
transitional stage B cell | 2.26e-13 | 2 |
small pre-B-II cell | 2.26e-13 | 2 |
immature B cell | 2.26e-13 | 2 |
hematopoietic oligopotent progenitor cell | 3.01e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.01e-09 | 161 |
precursor B cell | 3.34e-09 | 3 |
hematopoietic stem cell | 1.05e-08 | 168 |
nongranular leukocyte | 1.71e-08 | 115 |
hematopoietic cell | 4.56e-08 | 177 |
hematopoietic lineage restricted progenitor cell | 5.10e-08 | 120 |
antibody secreting cell | 1.06e-07 | 1 |
plasma cell | 1.06e-07 | 1 |
plasmablast | 1.06e-07 | 1 |
B-1 B cell | 2.37e-07 | 1 |
leukocyte | 9.70e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.84e-07 | 1 |
mucosa-associated lymphoid tissue | 2.84e-07 | 1 |
lymphoid tissue | 2.84e-07 | 1 |
tonsillar ring | 2.84e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.15e-21 | 10 |
hematologic cancer | 3.47e-12 | 51 |
immune system cancer | 3.47e-12 | 51 |
chronic leukemia | 6.05e-12 | 8 |
genetic disease | 1.20e-07 | 1 |
monogenic disease | 1.20e-07 | 1 |
xeroderma pigmentosum | 1.20e-07 | 1 |
lymphatic system cancer | 2.37e-07 | 1 |
lymphosarcoma | 2.37e-07 | 1 |
non-Hodgkin lymphoma | 3.21e-07 | 1 |
cutaneous T cell lymphoma | 3.21e-07 | 1 |
mycosis fungoides | 3.21e-07 | 1 |