FFCP PHASE1:Hg19::chr4:1857937..1857940,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3954 | |EntrezGene=3954 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6556 | |HGNC=6556 | ||
|TSSclassifier=strong | |||
|UniProt=O95202 | |UniProt=O95202 | ||
|association_with_transcript=33bp_to_ENST00000302787,NM_012318,uc003gdv.2,uc011bvg.1_5end | |association_with_transcript=33bp_to_ENST00000302787,NM_012318,uc003gdv.2,uc011bvg.1_5end | ||
|cluster_id=chr4:1857937..1857940,- | |||
|description=CAGE_peak_6_at_LETM1_5end | |description=CAGE_peak_6_at_LETM1_5end | ||
|id=chr4:1857937..1857940,- | |id=chr4:1857937..1857940,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000784;1.68e-12;3!CL:0002591;1.97e-10;1!CL:0002601;5.29e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,2.12e-12,3;CL:0002591,2.16e-10,1;CL:0002601,8.99e-10,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.88e-18;2!UBERON:0005058;2.88e-18;2!UBERON:0009113;2.88e-18;2!UBERON:0000077;5.99e-08;27!UBERON:0004177;7.49e-08;5!UBERON:0005057;7.49e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003351,1.04e-13,6;UBERON:0002370,1.46e-09,4;UBERON:0005058,1.46e-09,4;UBERON:0009113,1.46e-09,4;UBERON:0003295,1.46e-09,4;UBERON:0005562,1.46e-09,4;UBERON:0001042,1.96e-08,10;UBERON:0009145,1.96e-08,10;UBERON:0006562,1.04e-07,11;UBERON:0009722,1.04e-07,11;UBERON:0007690,1.04e-07,11;UBERON:0000077,1.95e-07,29 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0.246242116153576,0.816002764977012,0.313454721478088,0,0.136874425072884,0,0.0764134057479513,0.246301768349837,0.0787107813136792,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0.232401601740905,0,0,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0,0,0,0.339928028092699,0.766440987203842,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,0,0.221729397462564,0.263504357079378,0.261958150995425,0,0.370784442784429,0,0.174129737299267,0,0.715471872916026,1.14398982156026,1.11437250398869,0.198762407366705,0,0.347140501607594,0.56530794192401,1.67799774483962,0.825354125820202,1.04497483268405,0,0,0,0.402829317109147,0,0.488124115096339,0,0.81014194788176,0.357198913136319,0.44905874525234,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0.311211035399766,0.269421344139376,0,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0.298897361103602,0.117434498643765,0,0.702254033511242,0,0.122834317311768,0.206651562351531,0,0,0,0,0.168336113954066,0,0,0,0,0.600952235626387,0.567160915800105,0.179389635688862,0,0,0,0.206105058476878,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,0,0,0.201504196455281,0.339121184620975,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0,0,0,0.36497735907583,0,0,0,0.928735856063958,0.721879481669586,0.236613600079688,0.168584690078102,0.482022059766964,0.220587945464788,0.217879444092406,0.474541238222193,0,0,0,0,1.40241773803446,0,0,0,0,0,0.882926198829301,0.122988438543114,0.343135620597051,0.658501712451753,0,0.201057944823262,0.277765335475589,0.977424915930974,0,0,0.115930404975077,0.117408694235822,0.577465791044295,0,0,0,0.858486162094873,0,0,0.148631162288728,0.93733833986777,0,0.283550194484773,0.179117045405697,0.290633938513962,0,0,0.088048434013226,0,0,0,0.253991577168676,0.381988425558278,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0.2933531432838,0.129271715757778,0,0,0,0,0.771622122786426,0,0.799266537048298,0,0,0,0,0,0.791951872933429,0,0,0.099972991182057,0,0,0,0.718874566474748,0,0,0.289562613335158,0.205476322550383,0.358121926479791,0.112085143993527,0.394061520403854,0.431255149719035,0.256686072559497,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0,0.117141414992713,0,0,0,0,0.184369168541703,0.173767228936166,0.587403472388222,0,0.206768026122887,0.215714200818617,0.106727557803444,0.606255142892519,1.66435439510497,0.30239029332968,0,0,0.280660094433074,0.128139149255701,0,0,0,0.154209693802656,0,0.246381468041427,0,0.116210378459959,0.362578348774867,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0,0.902399225814824,0.0770153371044148,0,0,0.105551628892876,0,1.19065593693561,0.215915916102139,0,0,0,0.509752546090077,1.66215201785745,0,0,0,0.256450125116389,0,0,0,0.27470839445503,0.165018999841176,0,0,0,0.290012154876366,0.616194468458578,0.614014698904518,0.275673144969061,0.107420244868274,0,0.0852266274161009,0.178064071293475,0.495854746082934,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0.6970372701606,0.308033580176089,0,0,0.55597265731176,0.286249773483982,0.372158369359667,0,0.190630193923825,1.02359116524534,0,0.636406495851874,0,0,0,0.235624804691373,0.606547444719948,0,0,0.48763373908959,0.487426979262569,0,0,0,2.26016233240486,1.10273068709225,0,0,0,0,0.405820753925408,0,0,0.286822704408103,0.294747123039363,0,1.06428319221179,0.211107635297664,0,1.13841952129715,0.699869440489966,0.192444225451024,0,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0.411362273086194,0,0,0,0.427296284509893,0.962479855263359,0,0.371606350251437,0,0.569134746787313,0.318852545457645,0.399158742865633,0,0.423347165447766,0,0,0,0.156679895773023,2.50634477090067,0.338583555603207,0.642352300414798,0.403599414382095,0,0.343505344755765,0,0,0.166849141711909,0.390776190804081,0.278406173895242,2.46174797895425,0.540911356951966,0.33307196799782,0,0,0.586032717087576,0.242721043499027,0.222886768554957,0,0,0,0,0,0.281338832821026,0,0.494411622680279,0,0,0.276283915531148,0,0.102268682502155,0.492339221844278,0,0.0898683511473268,0,0,0.197286811273867,0,0,0,0.463840490809256,3.99227596002388,0.260427761085233,0,0,0,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0.110579259931225,0.295547618953547,0.219385397153973,0.435753854075961,0.139423744278603,0,0.341826167541004,0,0.179515288819544,0.108647371922008,0,0,0,0,1.09886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| ||
|short_description=p6@LETM1 | |short_description=p6@LETM1 | ||
}} | }} |
Latest revision as of 02:50, 17 September 2015
Short description: | p6@LETM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LETM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENST00000302787, NM_012318, uc003gdv.2, uc011bvg.1_5end |
EntrezGene: | LETM1 |
HGNC: | 6556 |
UniProt: | O95202 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 2.12e-12 | 3 |
smooth muscle cell of the pulmonary artery | 2.16e-10 | 1 |
uterine smooth muscle cell | 8.99e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
pharyngeal epithelium | 1.04e-13 | 6 |
thymus | 1.46e-09 | 4 |
hemolymphoid system gland | 1.46e-09 | 4 |
thymic region | 1.46e-09 | 4 |
pharyngeal gland | 1.46e-09 | 4 |
thymus primordium | 1.46e-09 | 4 |
chordate pharynx | 1.96e-08 | 10 |
pharyngeal region of foregut | 1.96e-08 | 10 |
pharynx | 1.04e-07 | 11 |
entire pharyngeal arch endoderm | 1.04e-07 | 11 |
early pharyngeal endoderm | 1.04e-07 | 11 |
mixed endoderm/mesoderm-derived structure | 1.95e-07 | 29 |