FFCP PHASE1:Hg19::chr1:152798501..152798507,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=353131 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29459 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T7P2 | |||
|association_with_transcript=-15bp_to_ENST00000368766_5end | |||
|cluster_id=chr1:152798501..152798507,+ | |||
|coexpression_cluster_id=C202 | |||
|description=CAGE_peak_1_at_LCE1A_5end | |||
|id=chr1:152798501..152798507,+ | |||
|ontology_enrichment_celltype=CL:0000622!3.13e-26!5;CL:0000453!1.46e-25!5;CL:0000154!7.90e-22!6;CL:0000362!1.60e-16!8;CL:0002623!1.93e-16!3;CL:0000150!1.78e-14!9;CL:0002159!3.59e-14!13;CL:0000990!4.10e-14!8;CL:0000317!1.45e-11!2;CL:1000448!1.45e-11!2;CL:0002308!1.45e-11!2;CL:0002140!1.45e-11!2;CL:0000451!1.67e-11!10;CL:0001014!5.26e-11!2;CL:0001016!5.26e-11!2;CL:0000312!2.96e-10!5;CL:0000240!1.29e-08!6;CL:0000311!1.29e-08!6;CL:0000079!1.29e-08!6;CL:0000237!1.29e-08!6;CL:0000036!1.29e-08!6;CL:0000357!1.29e-08!6;CL:0000114!1.29e-08!6;CL:0002077!5.93e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0000622;6.15e-36;5!CL:0000362;7.60e-31;9!CL:0000154;5.10e-30;6!CL:0002159;4.18e-28;14!CL:0000317;4.37e-23;2!CL:1000448;4.37e-23;2!CL:0002308;4.37e-23;2!CL:0002140;4.37e-23;2!CL:0000312;8.63e-21;5!CL:0000453;3.74e-20;5!CL:0000150;3.90e-20;9!CL:0000240;1.95e-17;6!CL:0000311;1.95e-17;6!CL:0000079;1.95e-17;6!CL:0000237;1.95e-17;6!CL:0002623;4.63e-16;3!CL:0002077;5.15e-14;34!CL:0000990;1.78e-11;8!CL:0000451;1.73e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,8.06e-36,5;CL:0000362,9.44e-31,9;CL:0000154,6.38e-30,6;CL:0002159,4.82e-28,14;CL:0000317,6.12e-23,2;CL:1000448,6.12e-23,2;CL:0002308,6.12e-23,2;CL:0002140,6.12e-23,2;CL:0000312,8.93e-21,5;CL:0000453,3.39e-20,5;CL:0000150,4.53e-20,9;CL:0000240,2.01e-17,6;CL:0000311,2.01e-17,6;CL:0000079,2.01e-17,6;CL:0000237,2.01e-17,6;CL:0000036,2.01e-17,6;CL:0000357,2.01e-17,6;CL:0000114,2.01e-17,6;CL:0002623,4.63e-16,3;CL:0002077,2.57e-15,34;CL:0000990,1.69e-11,8;CL:0000451,1.65e-09,10 | |||
|ontology_enrichment_development_v019=CL:0000357;1.95e-17;6!CL:0000114;1.95e-17;6!UBERON:0004874;1.40e-12;1!UBERON:0000358;1.75e-12;1 | |||
|ontology_enrichment_disease=DOID:0060084!1.29e-07!3;DOID:127!1.29e-07!3;DOID:3151!8.81e-07!1;DOID:3149!8.81e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.05e-12;1!DOID:3149;1.05e-12;1!DOID:3451;5.57e-07;2!DOID:4159;5.57e-07;2!DOID:0060122;5.57e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.92e-13,1;DOID:3149,9.92e-13,1;DOID:3451,5.41e-07,2;DOID:4159,5.41e-07,2;DOID:0060122,5.41e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001003!3.10e-13!14;UBERON:0007376!3.10e-13!14;UBERON:0007383!3.10e-13!14;UBERON:0003408!1.12e-12!10;UBERON:0002419!1.45e-11!2;UBERON:0007771!1.45e-11!2;UBERON:0003297!1.45e-11!2;UBERON:0001821!1.45e-11!2;UBERON:0003487!1.45e-11!2;UBERON:0001820!1.45e-11!2;UBERON:0005089!1.45e-11!2;UBERON:0005088!1.45e-11!2;UBERON:0003102!2.30e-10!95;UBERON:0002097!4.85e-09!40;UBERON:0001044!1.89e-08!6;UBERON:0003293!1.89e-08!6;UBERON:0003294!1.89e-08!6;UBERON:0010047!1.89e-08!6;UBERON:0000167!1.89e-08!6;UBERON:0001042!3.30e-08!10;UBERON:0009145!3.30e-08!10;UBERON:0002199!7.29e-08!45;UBERON:0002416!7.29e-08!45;UBERON:0002240!9.55e-08!3;UBERON:0001723!9.88e-08!3;UBERON:0001033!9.88e-08!3;UBERON:0010056!9.88e-08!3;UBERON:0006562!1.81e-07!11;UBERON:0000078!5.41e-07!18;UBERON:0007029!7.90e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.78e-26;15!UBERON:0007376;1.78e-26;15!UBERON:0002419;4.37e-23;2!UBERON:0007771;4.37e-23;2!UBERON:0003297;4.37e-23;2!UBERON:0001821;4.37e-23;2!UBERON:0003487;4.37e-23;2!UBERON:0001820;4.37e-23;2!UBERON:0007029;7.88e-13;1!UBERON:0000989;1.40e-12;1!UBERON:0008811;1.40e-12;1!UBERON:0000014;2.27e-12;4!UBERON:0010371;2.54e-12;31!UBERON:0002199;1.94e-11;46!UBERON:0002416;1.94e-11;46!UBERON:0002097;2.52e-11;41!UBERON:0003102;1.13e-09;50!UBERON:0001044;1.74e-08;6!UBERON:0003293;1.74e-08;6!UBERON:0003294;1.74e-08;6!UBERON:0010047;1.74e-08;6!UBERON:0003408;1.74e-08;6!UBERON:0000167;1.74e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,2.08e-26,15;UBERON:0007376,2.08e-26,15;UBERON:0007383,2.08e-26,15;UBERON:0002419,6.12e-23,2;UBERON:0007771,6.12e-23,2;UBERON:0003297,6.12e-23,2;UBERON:0001821,6.12e-23,2;UBERON:0003487,6.12e-23,2;UBERON:0001820,6.12e-23,2;UBERON:0005089,6.12e-23,2;UBERON:0005088,6.12e-23,2;UBERON:0007029,7.89e-13,1;UBERON:0002097,9.53e-13,41;UBERON:0000989,1.40e-12,1;UBERON:0008811,1.40e-12,1;UBERON:0006258,1.40e-12,1;UBERON:0005876,1.40e-12,1;UBERON:0004874,1.40e-12,1;UBERON:0000014,2.20e-12,4;UBERON:0003102,4.33e-12,99;UBERON:0002199,2.72e-11,46;UBERON:0002416,2.72e-11,46;UBERON:0001044,1.74e-08,6;UBERON:0003293,1.74e-08,6;UBERON:0003294,1.74e-08,6;UBERON:0010047,1.74e-08,6;UBERON:0000167,1.74e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8285359614868,6.74410519545717,2.01057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,7.15066270640173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,7.71499781478312,0,0,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7537427795545,1.19578356282027,2.12635012532597,0,0,0,0,0,0,0,0,4.05650572386389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.45832296228224,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.414432328326074,4.60939888153665,202.539080911529,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,104.913574500774,0,0,0,0,0,0,0.771741581079447,0,0,0,0,1.57046773691956,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452122368852043,0.186224142887574,0,0,0,0.435433495793923,1.36893320434112,0,0.0717222053926763,0,0,0,0,0,4.69281884806909,0,0,0,0.201273793591026,0 | |||
|short_description=p1@LCE1A | |||
}} |
Latest revision as of 03:52, 17 September 2015
Short description: | p1@LCE1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCE1A_5end |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | -15bp_to_ENST00000368766_5end |
EntrezGene: | LCE1A |
HGNC: | 29459 |
UniProt: | Q5T7P2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 8.06e-36 | 5 |
epidermal cell | 9.44e-31 | 9 |
protein secreting cell | 6.38e-30 | 6 |
general ecto-epithelial cell | 4.82e-28 | 14 |
sebum secreting cell | 6.12e-23 | 2 |
epithelial cell of sweat gland | 6.12e-23 | 2 |
epithelial cell of skin gland | 6.12e-23 | 2 |
acinar cell of sebaceous gland | 6.12e-23 | 2 |
keratinocyte | 8.93e-21 | 5 |
Langerhans cell | 3.39e-20 | 5 |
glandular epithelial cell | 4.53e-20 | 9 |
stratified squamous epithelial cell | 2.01e-17 | 6 |
keratin accumulating cell | 2.01e-17 | 6 |
stratified epithelial cell | 2.01e-17 | 6 |
keratinizing barrier epithelial cell | 2.01e-17 | 6 |
epithelial fate stem cell | 2.01e-17 | 6 |
stratified epithelial stem cell | 2.01e-17 | 6 |
surface ectodermal cell | 2.01e-17 | 6 |
acinar cell of salivary gland | 4.63e-16 | 3 |
ecto-epithelial cell | 2.57e-15 | 34 |
conventional dendritic cell | 1.69e-11 | 8 |
dendritic cell | 1.65e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 2.08e-26 | 15 |
outer epithelium | 2.08e-26 | 15 |
enveloping layer of ectoderm | 2.08e-26 | 15 |
skin gland | 6.12e-23 | 2 |
epidermis gland | 6.12e-23 | 2 |
gland of integumental system | 6.12e-23 | 2 |
sebaceous gland | 6.12e-23 | 2 |
skin sebaceous gland | 6.12e-23 | 2 |
sweat gland | 6.12e-23 | 2 |
sweat gland placode | 6.12e-23 | 2 |
sebaceous gland placode | 6.12e-23 | 2 |
surface | 7.89e-13 | 1 |
skin of body | 9.53e-13 | 41 |
penis | 1.40e-12 | 1 |
intromittent organ | 1.40e-12 | 1 |
lateral plate mesenchyme | 1.40e-12 | 1 |
undifferentiated genital tubercle | 1.40e-12 | 1 |
somatopleure | 1.40e-12 | 1 |
zone of skin | 2.20e-12 | 4 |
surface structure | 4.33e-12 | 99 |
integument | 2.72e-11 | 46 |
integumental system | 2.72e-11 | 46 |
saliva-secreting gland | 1.74e-08 | 6 |
gland of oral region | 1.74e-08 | 6 |
gland of foregut | 1.74e-08 | 6 |
oral gland | 1.74e-08 | 6 |
oral cavity | 1.74e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.92e-13 | 1 |
keratoacanthoma | 9.92e-13 | 1 |
skin carcinoma | 5.41e-07 | 2 |
skin cancer | 5.41e-07 | 2 |
integumentary system cancer | 5.41e-07 | 2 |