FFCP PHASE1:Hg19::chr6:21666683..21666690,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | |association_with_transcript=8bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | ||
|cluster_id=chr6:21666683..21666690,+ | |||
|coexpression_cluster_id=C724 | |||
|description=CAGE_peak_9_at_LINC00340_5end | |description=CAGE_peak_9_at_LINC00340_5end | ||
|id=chr6:21666683..21666690,+ | |id=chr6:21666683..21666690,+ | ||
|ontology_enrichment_celltype=CL:0000047!3.31e-11!8;CL:0000540!6.37e-11!6;CL:0000031!6.37e-11!6;CL:0000404!6.37e-11!6;CL:0002319!1.79e-10!25;CL:0002322!3.17e-08!5;CL:0000064!8.06e-08!3;CL:0005012!8.06e-08!3;CL:0000067!8.06e-08!3;CL:0002304!8.06e-08!3;CL:0002605!1.15e-07!3;CL:0000133!2.78e-07!59 | |ontology_enrichment_celltype=CL:0000047!3.31e-11!8;CL:0000540!6.37e-11!6;CL:0000031!6.37e-11!6;CL:0000404!6.37e-11!6;CL:0002319!1.79e-10!25;CL:0002322!3.17e-08!5;CL:0000064!8.06e-08!3;CL:0005012!8.06e-08!3;CL:0000067!8.06e-08!3;CL:0002304!8.06e-08!3;CL:0002605!1.15e-07!3;CL:0000133!2.78e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1001319;2.66e-18;1!CL:1000600;2.66e-18;1!CL:0002138;6.70e-12;6!CL:0002139;8.34e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.66e-18,1;CL:1000600,2.66e-18,1;CL:0005020,7.08e-12,6;CL:0002138,7.08e-12,6;CL:0005022,7.08e-12,6;CL:0002139,8.59e-07,24 | |||
|ontology_enrichment_development_v019=CL:0005022;6.70e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!1.00e-09!4;UBERON:0001778!8.06e-08!3;UBERON:0001775!8.06e-08!3;UBERON:0005743!9.38e-08!86;UBERON:0000956!1.58e-07!25;UBERON:0000203!1.58e-07!25;UBERON:0001017!1.77e-07!82;UBERON:0003056!4.54e-07!61;UBERON:0003075!7.89e-07!86;UBERON:0007284!7.89e-07!86;UBERON:0004121!8.93e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;2.66e-18;1!UBERON:0001256;2.66e-18;1!UBERON:0001259;2.66e-18;1!UBERON:0001950;5.78e-13;20!UBERON:0000922;8.81e-13;49!UBERON:0002619;7.25e-12;22!UBERON:0000956;1.56e-10;25!UBERON:0000203;1.56e-10;25!UBERON:0001871;2.46e-10;6!UBERON:0001255;7.98e-10;2!UBERON:0001556;7.98e-10;2!UBERON:0001473;3.70e-09;8!UBERON:0004536;3.70e-09;8!UBERON:0006558;3.70e-09;8!UBERON:0002791;3.47e-08;32!UBERON:0001869;4.45e-08;32!UBERON:0002465;1.67e-07;10!UBERON:0003528;1.81e-07;34!UBERON:0002020;1.81e-07;34!UBERON:0002114;7.08e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,2.66e-18,1;UBERON:0001256,2.66e-18,1;UBERON:0001259,2.66e-18,1;UBERON:0001950,5.78e-13,20;UBERON:0002619,7.25e-12,22;UBERON:0000956,1.56e-10,25;UBERON:0000203,1.56e-10,25;UBERON:0001871,2.58e-10,6;UBERON:0001255,7.98e-10,2;UBERON:0001556,7.98e-10,2;UBERON:0001473,3.86e-09,8;UBERON:0004536,3.86e-09,8;UBERON:0006558,3.86e-09,8;UBERON:0002791,2.34e-08,32;UBERON:0001869,2.34e-08,32;UBERON:0003528,6.80e-08,34;UBERON:0002020,6.80e-08,34;UBERON:0001893,6.80e-08,34;UBERON:0002465,1.73e-07,10;UBERON:0002114,7.28e-07,2 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,1.06729878806013,1.33888245105868,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,3.06633274931766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.530119073285941,0.116193942869518,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0.171567810298526,0,0,0,0,0,0,0,0.463721619900307,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0.670065061337395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0.370691816839509,0.313265848516366,0,0,0,0,0,0,0.394584402849391,1.20990716048664,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0.482259445395058,0.275078873194468,0.83088067605837,0,0,0,0,0,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.94634094001504,0,0,0,0,0,0,0,3.27693205088234,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,2.7348740450911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0.233939463462106,0,0,0.45178432815584,0,0.754814217833368,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0,2.61810414204226,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0.0918948995348449,0.250707539292375,0,0,0,0,0.213233981900981,0,0.775066918032073,0.682821857254437,0,0,0,0,0,0.0673520530145875,0,0.332660356546013,8.22173012970842,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p9@LINC00340 | |short_description=p9@LINC00340 | ||
}} | }} |
Latest revision as of 04:07, 17 September 2015
Short description: | p9@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | 8bp_to_NR_015410, uc003ndj.2, uc011djj.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.66e-18 | 1 |
lower urinary tract cell | 2.66e-18 | 1 |
lymphangioblast | 7.08e-12 | 6 |
endothelial cell of lymphatic vessel | 7.08e-12 | 6 |
vascular lymphangioblast | 7.08e-12 | 6 |
endothelial cell of vascular tree | 8.59e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 2.66e-18 | 1 |
wall of urinary bladder | 2.66e-18 | 1 |
mucosa of urinary bladder | 2.66e-18 | 1 |
neocortex | 5.78e-13 | 20 |
regional part of cerebral cortex | 7.25e-12 | 22 |
cerebral cortex | 1.56e-10 | 25 |
pallium | 1.56e-10 | 25 |
temporal lobe | 2.58e-10 | 6 |
urinary bladder | 7.98e-10 | 2 |
lower urinary tract | 7.98e-10 | 2 |
lymphatic vessel | 3.86e-09 | 8 |
lymph vasculature | 3.86e-09 | 8 |
lymphatic part of lymphoid system | 3.86e-09 | 8 |
regional part of telencephalon | 2.34e-08 | 32 |
cerebral hemisphere | 2.34e-08 | 32 |
brain grey matter | 6.80e-08 | 34 |
gray matter | 6.80e-08 | 34 |
telencephalon | 6.80e-08 | 34 |
lymphoid system | 1.73e-07 | 10 |
duodenum | 7.28e-07 | 2 |