FFCP PHASE1:Hg19::chr15:33023250..33023262,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:33023250..33023262,+ to FFCP PHASE1:Hg19::chr15:33023250..33023262,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26585 | |EntrezGene=26585 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |HGNC=2001 | ||
|TSSclassifier=strong | |||
|UniProt=O60565 | |UniProt=O60565 | ||
|association_with_transcript=358bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|cluster_id=chr15:33023250..33023262,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_19_at_GREM1_5end | |||
|id=chr15:33023250..33023262,+ | |||
|ontology_enrichment_celltype=CL:0000057!2.09e-27!75;CL:0000055!1.35e-25!180;CL:0002334!2.01e-16!12;CL:0002620!1.19e-15!23;CL:0000048!2.41e-13!430;CL:0000723!9.61e-13!436;CL:0000034!5.66e-12!444;CL:0000192!5.44e-08!42;CL:0000514!5.44e-08!42;CL:0000680!6.24e-08!57;CL:0000056!6.24e-08!57;CL:0000355!6.24e-08!57;CL:0002320!6.95e-08!365;CL:0000134!9.76e-08!358;CL:0000359!1.79e-07!32;CL:0002371!3.73e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.83e-17;12!CL:0002620;3.79e-12;23!CL:0002579;4.26e-11;3!CL:0000135;7.80e-11;3!CL:0000388;7.80e-11;3!CL:0002615;2.35e-10;3!CL:0000057;6.40e-09;73!CL:0000136;1.40e-08;13!CL:0002617;1.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.74e-27,76;CL:0002334,3.79e-17,12;CL:0000136,1.02e-12,15;CL:0002620,3.11e-12,23;CL:0002579,2.48e-11,3;CL:0000135,7.32e-11,3;CL:0000388,7.32e-11,3;CL:0002615,3.66e-10,3;CL:0000134,1.36e-09,354;CL:0002320,3.35e-09,361;CL:0000048,3.70e-09,427;CL:0000723,7.18e-09,433;CL:0000034,1.69e-08,441;CL:0000219,1.71e-08,386;CL:0002617,1.12e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.32e-09!14;DOID:17!3.88e-08!5;DOID:450!3.88e-08!5;DOID:66!3.88e-08!5;DOID:423!3.88e-08!5;DOID:0080000!3.88e-08!5;DOID:11722!3.88e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.16e-16;5!DOID:450;2.16e-16;5!DOID:66;2.16e-16;5!DOID:423;2.16e-16;5!DOID:0080000;2.16e-16;5!DOID:11722;2.16e-16;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.54e-16,5;DOID:450,1.54e-16,5;DOID:66,1.54e-16,5;DOID:423,1.54e-16,5;DOID:0080000,1.54e-16,5;DOID:11722,1.54e-16,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!4.95e-14!45;UBERON:0002416!4.95e-14!45;UBERON:0002097!7.63e-14!40;UBERON:0003102!7.12e-11!95;UBERON:0000914!1.39e-10!83;UBERON:0002329!1.39e-10!83;UBERON:0003077!1.39e-10!83;UBERON:0003059!1.39e-10!83;UBERON:0007282!1.39e-10!83;UBERON:0009618!1.39e-10!83;UBERON:0007285!1.39e-10!83;UBERON:0003688!1.50e-09!6;UBERON:0002358!1.50e-09!6;UBERON:0003684!1.50e-09!6;UBERON:0001178!1.50e-09!6;UBERON:0004290!1.03e-08!70;UBERON:0002384!2.43e-08!375;UBERON:0000486!1.37e-07!82;UBERON:0004573!2.28e-07!33;UBERON:0004571!2.28e-07!33;UBERON:0002385!3.25e-07!63;UBERON:0001015!3.25e-07!63;UBERON:0000383!3.25e-07!63;UBERON:0001135!3.26e-07!15;UBERON:0001134!5.45e-07!61;UBERON:0002036!5.45e-07!61;UBERON:0003082!5.45e-07!61;UBERON:0002118!6.26e-07!5;UBERON:0004532!6.26e-07!5;UBERON:0004457!6.93e-07!12;UBERON:0000042!6.93e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.02e-19;6!UBERON:0002358;1.02e-19;6!UBERON:0003684;1.02e-19;6!UBERON:0001178;1.02e-19;6!UBERON:0004457;6.45e-13;9!UBERON:0000042;6.45e-13;9!UBERON:0007846;7.80e-11;3!UBERON:0000043;7.80e-11;3!UBERON:0007845;7.80e-11;3!UBERON:0002097;5.00e-08;41!UBERON:0005406;9.73e-08;2!UBERON:0002384;3.34e-07;198!UBERON:0002199;3.35e-07;46!UBERON:0002416;3.35e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,9.44e-20,6;UBERON:0002358,9.44e-20,6;UBERON:0003684,9.44e-20,6;UBERON:0001178,9.44e-20,6;UBERON:0007846,7.32e-11,3;UBERON:0000043,7.32e-11,3;UBERON:0007845,7.32e-11,3;UBERON:0004457,1.58e-09,12;UBERON:0000042,1.58e-09,12;UBERON:0002384,2.13e-09,371;UBERON:0002199,3.44e-09,46;UBERON:0002416,3.44e-09,46;UBERON:0002097,4.67e-09,41;UBERON:0005406,6.72e-08,2;UBERON:0003102,2.00e-07,99 | |||
|phase1_expression=1.2717486548939,4.06790995392868,1.40954404095971,1.0007329835313,3.12872766099101,2.61701557230111,0,0,0,0,0,0,0,0.123766352960047,0,2.01697543935533,0.602694528023977,2.92124036154949,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0,0,2.43317435151318,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0.379891534993739,0.264818361626438,1.72101972449288,0.709336764396714,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0.597794722207204,0.117434498643765,0.161872944368132,0.280901613404497,0,0,0.103325781175765,3.56400857184616,5.19260551484969,0,0,0,0.125118519871964,0,1.31693286264251,4.29082914118628,2.25357088359895,0,2.51145489964407,1.70845911054854,3.39091041855299,1.50045548042201,2.06105058476878,0.515281080091258,1.48893485065272,0.675105328965065,2.14361411354637,1.26216887122057,1.56484827691909,0,2.4850671476163,0.906768884048762,0.508681776931463,0,0,0,0,0,0,0,0,0,0,6.43240938192885,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.258543431515556,0,0,1.86156681609409,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0.579125226670317,0.205476322550383,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.45579603071565,3.03329280955175,2.20783381047509,0.937131319941706,0,0,1.03473071292505,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0,1.66435439510497,0,3.96972492510043,0.460385919864187,2.52594084989766,1.92208723883551,5.62877973973374,4.82561763430822,2.96836132889982,0.616838775210622,1.24293207719189,0.492762936082855,2.59627214591811,0.813472649219715,0,0,0,0.114814448164607,0.364182336013434,0.524497659837696,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.31481234683064,0,0.616067160352178,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,1.17812402345686,0,0,0.421258456238981,0,0.487426979262569,2.11300293513511,0.272999822815972,0.424216295861138,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0.276283915531148,0,0,0,4.0435146396035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,5.40449825313605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0.189403005275089,0,0.889811221596536,0,0,0.466311601748341,0.443565449968902,0.477890301491107,0.899606224327209,0.155262956876259,0,0.265841714557995,1.04349012362347,0,0.761610424337591,0.406870733204662,1.27294061441792,0.107410557042488,5.10437135866343,1.19428766609585,0.400027764663154,1.37358282073117,2.69399591012735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4980478571876,0,0,1.05802783107205,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0,3.39854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,3.34795516350076,3.69740502905135,1.29787968637137,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=1.2717486548939,4.06790995392868,1.40954404095971,1.0007329835313,3.12872766099101,2.61701557230111,0,0,0,0,0,0,0,0.123766352960047,0,2.01697543935533,0.602694528023977,2.92124036154949,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0,0,2.43317435151318,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0.379891534993739,0.264818361626438,1.72101972449288,0.709336764396714,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0.597794722207204,0.117434498643765,0.161872944368132,0.280901613404497,0,0,0.103325781175765,3.56400857184616,5.19260551484969,0,0,0,0.125118519871964,0,1.31693286264251,4.29082914118628,2.25357088359895,0,2.51145489964407,1.70845911054854,3.39091041855299,1.50045548042201,2.06105058476878,0.515281080091258,1.48893485065272,0.675105328965065,2.14361411354637,1.26216887122057,1.56484827691909,0,2.4850671476163,0.906768884048762,0.508681776931463,0,0,0,0,0,0,0,0,0,0,6.43240938192885,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.258543431515556,0,0,1.86156681609409,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0.579125226670317,0.205476322550383,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.45579603071565,3.03329280955175,2.20783381047509,0.937131319941706,0,0,1.03473071292505,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0,1.66435439510497,0,3.96972492510043,0.460385919864187,2.52594084989766,1.92208723883551,5.62877973973374,4.82561763430822,2.96836132889982,0.616838775210622,1.24293207719189,0.492762936082855,2.59627214591811,0.813472649219715,0,0,0,0.114814448164607,0.364182336013434,0.524497659837696,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.31481234683064,0,0.616067160352178,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,1.17812402345686,0,0,0.421258456238981,0,0.487426979262569,2.11300293513511,0.272999822815972,0.424216295861138,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0.276283915531148,0,0,0,4.0435146396035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,5.40449825313605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0.189403005275089,0,0.889811221596536,0,0,0.466311601748341,0.443565449968902,0.477890301491107,0.899606224327209,0.155262956876259,0,0.265841714557995,1.04349012362347,0,0.761610424337591,0.406870733204662,1.27294061441792,0.107410557042488,5.10437135866343,1.19428766609585,0.400027764663154,1.37358282073117,2.69399591012735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4980478571876,0,0,1.05802783107205,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0,3.39854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,3.34795516350076,3.69740502905135,1.29787968637137,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p19@GREM1 | |||
}} | }} |
Latest revision as of 04:36, 17 September 2015
Short description: | p19@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 358bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.74e-27 | 76 |
preadipocyte | 3.79e-17 | 12 |
fat cell | 1.02e-12 | 15 |
skin fibroblast | 3.11e-12 | 23 |
omentum preadipocyte | 2.48e-11 | 3 |
fibrocyte | 7.32e-11 | 3 |
tendon cell | 7.32e-11 | 3 |
adipocyte of omentum tissue | 3.66e-10 | 3 |
mesenchymal cell | 1.36e-09 | 354 |
connective tissue cell | 3.35e-09 | 361 |
multi fate stem cell | 3.70e-09 | 427 |
somatic stem cell | 7.18e-09 | 433 |
stem cell | 1.69e-08 | 441 |
motile cell | 1.71e-08 | 386 |
adipocyte of breast | 1.12e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 9.44e-20 | 6 |
peritoneum | 9.44e-20 | 6 |
abdominal cavity | 9.44e-20 | 6 |
visceral peritoneum | 9.44e-20 | 6 |
dense regular connective tissue | 7.32e-11 | 3 |
tendon | 7.32e-11 | 3 |
regular connective tissue | 7.32e-11 | 3 |
cavity lining | 1.58e-09 | 12 |
serous membrane | 1.58e-09 | 12 |
connective tissue | 2.13e-09 | 371 |
integument | 3.44e-09 | 46 |
integumental system | 3.44e-09 | 46 |
skin of body | 4.67e-09 | 41 |
perirenal fat | 6.72e-08 | 2 |
surface structure | 2.00e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.54e-16 | 5 |
myotonic disease | 1.54e-16 | 5 |
muscle tissue disease | 1.54e-16 | 5 |
myopathy | 1.54e-16 | 5 |
muscular disease | 1.54e-16 | 5 |
myotonic dystrophy | 1.54e-16 | 5 |