FFCP PHASE1:Hg19::chr13:36871902..36872023,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728591,100526761,54937 | |EntrezGene=728591,100526761,54937 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34361,38866,26026 | |HGNC=34361,38866,26026 | ||
|TSSclassifier=strong | |||
|UniProt=A6NNP5,B4DX90,B7ZW49 | |UniProt=A6NNP5,B4DX90,B7ZW49 | ||
|association_with_transcript=0bp_to_ENST00000379864,ENST00000471781,ENST00000477250,ENST00000479850,ENST00000485600,ENST00000486683,ENST00000510088,ENST00000511166,ENST00000554962,NM_001144981,NM_001144982,NM_001144983,NM_001144984,NM_001144985,NM_001144986,NM_001198908,NM_001198910,uc001uvl.3,uc010abm.2,uc010abn.2,uc010abo.2,uc010tei.1,uc010tej.1,uc010tek.1,uc010tel.1,uc010tem.1_5end | |association_with_transcript=0bp_to_ENST00000379864,ENST00000471781,ENST00000477250,ENST00000479850,ENST00000485600,ENST00000486683,ENST00000510088,ENST00000511166,ENST00000554962,NM_001144981,NM_001144982,NM_001144983,NM_001144984,NM_001144985,NM_001144986,NM_001198908,NM_001198910,uc001uvl.3,uc010abm.2,uc010abn.2,uc010abo.2,uc010tei.1,uc010tej.1,uc010tek.1,uc010tel.1,uc010tem.1_5end | ||
|cluster_id=chr13:36871902..36872023,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_1_at_CCDC169-SOHLH2_5end,CAGE_peak_1_at_CCDC169_5end,CAGE_peak_1_at_SOHLH2_5end | |description=CAGE_peak_1_at_CCDC169-SOHLH2_5end,CAGE_peak_1_at_CCDC169_5end,CAGE_peak_1_at_SOHLH2_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002321;4.10e-08;15 | |ontology_enrichment_celltype_v019=CL:0002321;4.10e-08;15 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:8692!6.40e-12!31;DOID:14566!6.09e-11!239;DOID:162!7.31e-10!235;DOID:3095!2.41e-09!22;DOID:2994!2.41e-09!22;DOID:1240!5.30e-07!39 | |ontology_enrichment_disease=DOID:8692!6.40e-12!31;DOID:14566!6.09e-11!239;DOID:162!7.31e-10!235;DOID:3095!2.41e-09!22;DOID:2994!2.41e-09!22;DOID:1240!5.30e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.54e-13;31!DOID:3095;6.84e-10;22!DOID:2994;6.84e-10;22!DOID:1240;1.46e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;2.54e-13;31!DOID:3095;6.84e-10;22!DOID:2994;6.84e-10;22!DOID:1240;1.46e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,1.87e-13,31;DOID:14566,4.99e-12,239;DOID:162,5.28e-11,235;DOID:3095,1.45e-09,22;DOID:2994,1.45e-09,22;DOID:1240,1.07e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!9.71e-10!94;UBERON:0001016!9.71e-10!94;UBERON:0002346!5.03e-08!90;UBERON:0005743!1.52e-07!86;UBERON:0000924!3.05e-07!173;UBERON:0006601!3.05e-07!173;UBERON:0003056!4.21e-07!61;UBERON:0003075!9.54e-07!86;UBERON:0007284!9.54e-07!86 | |ontology_enrichment_uberon=UBERON:0000073!9.71e-10!94;UBERON:0001016!9.71e-10!94;UBERON:0002346!5.03e-08!90;UBERON:0005743!1.52e-07!86;UBERON:0000924!3.05e-07!173;UBERON:0006601!3.05e-07!173;UBERON:0003056!4.21e-07!61;UBERON:0003075!9.54e-07!86;UBERON:0007284!9.54e-07!86 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.30e-08,89;UBERON:0002346,5.53e-07,86 | |||
|phase1_expression=0.181678379270557,1.71280419112787,1.83240725324762,1.0007329835313,0.893922188854576,1.74467704820074,0,0.631719873426831,1.04474251279935,0.737201809504527,0,0,0.263766978228454,1.48519623552056,1.65698687863958,1.34465029290355,1.20538905604795,2.19093027116212,0.487932798790507,1.96993692922861,1.02000345622126,1.25381888591235,4.57977579409691,6.70684682857133,2.63639543149086,0,0,0,0,0,0.154816123316076,0,0,0,0,0,6.16560922603179,0.553995408531877,0,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0.209658645508376,0.336985893439485,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,3.36305137788922,7.90152254325231,0,0,0,0,0,0.473447805734733,0,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.01210257911091,1.66221330396589,0.722878304769133,0,1.59331170856906,0,0,10.7769691567037,3.76939975686359,5.09441757020131,29.0118652227433,0.364295288292542,0.741568885568859,0.324547393654683,0,0.664789802594326,0,0,0,1.19257444420023,2.58070378531837,0.347140501607594,1.13061588384802,0.838998872419812,1.37559020970034,1.46296476575767,3.87625138753993,5.33649394030065,2.34304428935269,0.402829317109147,1.52054421143703,0,1.83831540172934,0,3.12549048994279,2.91888184414021,3.0405099730497,1.53316637465883,1.89853131913626,1.83201743930407,0,0,0,0.496971951695318,0.506522046658319,4.10468460520978,2.0078563452417,1.77334191099179,1.12135520028461,0,1.2333377420858,2.48968828319813,2.42479209725439,0.653847612453835,0.454072282934794,0,2.34321431833797,3.74592092196385,2.2818872861778,2.69007624993242,5.75429043354448,3.0755859429945,3.23036855415172,2.04154171254893,1.22834317311768,1.85986406116378,1.18800285728205,1.48360157567134,0.910161361938026,0,1.85169725349473,1.37630371859161,1.93944880838928,1.75591048352335,0.919463387397059,1.65261864797256,1.24775401476023,1.97328599257748,2.56268866582281,0.423863802319124,0.600182192168805,0.309157587715317,0.515281080091258,0,0.168776332241266,0.487185025805993,1.51460264546469,1.01254888506529,1.13152239773168,0,1.10827308050404,0.508681776931463,0.193260853163297,0.272746120590835,0,30.4934265323988,28.8914894940838,24.5169219454684,19.0736341228282,26.2413684910654,3.28479623168247,0,0,1.38134921352481,2.3218396401599,3.60939740834793,1.77460200059766,1.85443159085912,2.16909926895134,1.10293972732394,1.30727666455444,0.949082476444386,1.34831308160164,1.56977172100277,1.53898862778556,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,1.71567810298526,0,0,0.100528972411631,1.38882667737794,0.651616610620649,4.15973914111831,1.44331342025273,9.27443239800615,0.70445216541493,1.87676382089396,0.462985512576611,0.380508304469197,0,0,0.738651018262192,0.234004265139238,0.445893486866185,0.93733833986777,0,0.141775097242386,0.985143749731331,1.45316969256981,0,0,0.264145302039678,0.414656231081544,1.44119953416961,0.37872730027914,1.58744735730423,1.52795370223311,1.17217447210047,1.71072446022705,1.54241239054985,4.80548892550268,4.28739648945867,0.224262168690721,0.43596006883328,0.36669142910475,1.42198887333556,0,0,2.39344304926383,2.08014873822732,0.514414748524284,2.83698264046557,1.3321108950805,2.85955987316295,0,0.823240336780769,2.28015329005615,2.48774364119782,5.543663110534,2.71295439353627,0.871533458600294,1.99945982364114,0,0,0,0.718874566474748,1.14861935834114,5.70547620162874,1.88215698667853,1.02738161275192,3.04403637507822,0,0,0,0.128343036279748,3.04913549066956,0,2.31986643833309,4.18790663335872,0.637938751653163,0,0,0.414415513436035,3.0672872929785,3.00102312635806,3.25518028439683,0,0.178428988797162,0.315404830067869,0.234282829985426,2.40756879782175,2.27407504055985,1.03473071292505,1.99267679560631,0.737476674166813,1.56390506042549,0.979005787313703,1.02943027143257,0,0.215714200818617,0.320182673410333,0,0,0,0.248107807818777,0.61384789315225,0.561320188866147,0.768834895534206,0.511707249066704,0.482561763430822,0,0.462629081407967,0.887808626565635,1.56041596426237,0.519254429183621,2.09178681227927,0,0,1.65745780084613,0.68888668898764,3.09554985611419,1.44236856455367,0,1.23224539367064,2.35304930753057,0,1.37217117560738,2.27466768141793,1.53084334748864,0,0,0.270946437543853,1.50506932156456,1.78413391131527,1.66215201785745,1.79099803777743,5.04297716285649,4.70583811844821,14.6176571316342,5.9042636225947,6.83294628795036,3.81251743096572,7.6002655799225,8.66349749166174,0,1.30012049207304,0,4.06017016826912,5.08360436478326,2.6095624703442,4.27293374702045,4.72649077420404,3.77043404176994,3.32383846922794,2.1367688555217,0.330569830721956,0.384380134730212,1.53135254993501,0.809262246844399,0.929691098594572,2.20368642781448,0,0.616067160352178,1.59691809095107,1.73986598415015,0.74129687641568,1.28812398067792,2.60510858551767,3.79655309662471,1.715671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|phase1_expression=0.181678379270557,1.71280419112787,1.83240725324762,1.0007329835313,0.893922188854576,1.74467704820074,0,0.631719873426831,1.04474251279935,0.737201809504527,0,0,0.263766978228454,1.48519623552056,1.65698687863958,1.34465029290355,1.20538905604795,2.19093027116212,0.487932798790507,1.96993692922861,1.02000345622126,1.25381888591235,4.57977579409691,6.70684682857133,2.63639543149086,0,0,0,0,0,0.154816123316076,0,0,0,0,0,6.16560922603179,0.553995408531877,0,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0.209658645508376,0.336985893439485,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,3.36305137788922,7.90152254325231,0,0,0,0,0,0.473447805734733,0,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.01210257911091,1.66221330396589,0.722878304769133,0,1.59331170856906,0,0,10.7769691567037,3.76939975686359,5.09441757020131,29.0118652227433,0.364295288292542,0.741568885568859,0.324547393654683,0,0.664789802594326,0,0,0,1.19257444420023,2.58070378531837,0.347140501607594,1.13061588384802,0.838998872419812,1.37559020970034,1.46296476575767,3.87625138753993,5.33649394030065,2.34304428935269,0.402829317109147,1.52054421143703,0,1.83831540172934,0,3.12549048994279,2.91888184414021,3.0405099730497,1.53316637465883,1.89853131913626,1.83201743930407,0,0,0,0.496971951695318,0.506522046658319,4.10468460520978,2.0078563452417,1.77334191099179,1.12135520028461,0,1.2333377420858,2.48968828319813,2.42479209725439,0.653847612453835,0.454072282934794,0,2.34321431833797,3.74592092196385,2.2818872861778,2.69007624993242,5.75429043354448,3.0755859429945,3.23036855415172,2.04154171254893,1.22834317311768,1.85986406116378,1.18800285728205,1.48360157567134,0.910161361938026,0,1.85169725349473,1.37630371859161,1.93944880838928,1.75591048352335,0.919463387397059,1.65261864797256,1.24775401476023,1.97328599257748,2.56268866582281,0.423863802319124,0.600182192168805,0.309157587715317,0.515281080091258,0,0.168776332241266,0.487185025805993,1.51460264546469,1.01254888506529,1.13152239773168,0,1.10827308050404,0.508681776931463,0.193260853163297,0.272746120590835,0,30.4934265323988,28.8914894940838,24.5169219454684,19.0736341228282,26.2413684910654,3.28479623168247,0,0,1.38134921352481,2.3218396401599,3.60939740834793,1.77460200059766,1.85443159085912,2.16909926895134,1.10293972732394,1.30727666455444,0.949082476444386,1.34831308160164,1.56977172100277,1.53898862778556,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,1.71567810298526,0,0,0.100528972411631,1.38882667737794,0.651616610620649,4.15973914111831,1.44331342025273,9.27443239800615,0.70445216541493,1.87676382089396,0.462985512576611,0.380508304469197,0,0,0.738651018262192,0.234004265139238,0.445893486866185,0.93733833986777,0,0.141775097242386,0.985143749731331,1.45316969256981,0,0,0.264145302039678,0.414656231081544,1.44119953416961,0.37872730027914,1.58744735730423,1.52795370223311,1.17217447210047,1.71072446022705,1.54241239054985,4.80548892550268,4.28739648945867,0.224262168690721,0.43596006883328,0.36669142910475,1.42198887333556,0,0,2.39344304926383,2.08014873822732,0.514414748524284,2.83698264046557,1.3321108950805,2.85955987316295,0,0.823240336780769,2.28015329005615,2.48774364119782,5.543663110534,2.71295439353627,0.871533458600294,1.99945982364114,0,0,0,0.718874566474748,1.14861935834114,5.70547620162874,1.88215698667853,1.02738161275192,3.04403637507822,0,0,0,0.128343036279748,3.04913549066956,0,2.31986643833309,4.18790663335872,0.637938751653163,0,0,0.414415513436035,3.0672872929785,3.00102312635806,3.25518028439683,0,0.178428988797162,0.315404830067869,0.234282829985426,2.40756879782175,2.27407504055985,1.03473071292505,1.99267679560631,0.737476674166813,1.56390506042549,0.979005787313703,1.02943027143257,0,0.215714200818617,0.320182673410333,0,0,0,0.248107807818777,0.61384789315225,0.561320188866147,0.768834895534206,0.511707249066704,0.482561763430822,0,0.462629081407967,0.887808626565635,1.56041596426237,0.519254429183621,2.09178681227927,0,0,1.65745780084613,0.68888668898764,3.09554985611419,1.44236856455367,0,1.23224539367064,2.35304930753057,0,1.37217117560738,2.27466768141793,1.53084334748864,0,0,0.270946437543853,1.50506932156456,1.78413391131527,1.66215201785745,1.79099803777743,5.04297716285649,4.70583811844821,14.6176571316342,5.9042636225947,6.83294628795036,3.81251743096572,7.6002655799225,8.66349749166174,0,1.30012049207304,0,4.06017016826912,5.08360436478326,2.6095624703442,4.27293374702045,4.72649077420404,3.77043404176994,3.32383846922794,2.1367688555217,0.330569830721956,0.384380134730212,1.53135254993501,0.809262246844399,0.929691098594572,2.20368642781448,0,0.616067160352178,1.59691809095107,1.73986598415015,0.74129687641568,1.28812398067792,2.60510858551767,3.79655309662471,1.715671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| ||
|short_description=p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2 | |short_description=p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2 | ||
}} | }} |
Latest revision as of 05:42, 17 September 2015
Short description: | p1@CCDC169-SOHLH2, p1@CCDC169, p1@SOHLH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC169-SOHLH2_5end, CAGE_peak_1_at_CCDC169_5end, CAGE_peak_1_at_SOHLH2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000379864, ENST00000471781, ENST00000477250, ENST00000479850, ENST00000485600, ENST00000486683, ENST00000510088, ENST00000511166, ENST00000554962, NM_001144981, NM_001144982, NM_001144983, NM_001144984, NM_001144985, NM_001144986, NM_001198908, NM_001198910, uc001uvl.3, uc010abm.2, uc010abn.2, uc010abo.2, uc010tei.1, uc010tej.1, uc010tek.1, uc010tel.1, uc010tem.1_5end |
EntrezGene: | 728591,100526761,54937 |
HGNC: | 38866, 26026&submit=Submit 34361, 38866, 26026 |
UniProt: | A6NNP5B4DX90B7ZW49 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.30e-08 | 89 |
neurectoderm | 5.53e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.87e-13 | 31 |
disease of cellular proliferation | 4.99e-12 | 239 |
cancer | 5.28e-11 | 235 |
germ cell and embryonal cancer | 1.45e-09 | 22 |
germ cell cancer | 1.45e-09 | 22 |
leukemia | 1.07e-08 | 39 |