FFCP PHASE1:Hg19::chr5:176836577..176836584,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2161 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3530 | |||
|TSSclassifier=strong | |||
|UniProt=P00748,Q8IZZ5 | |||
|association_with_transcript=0bp_to_ENST00000253496,NM_000505,uc003mgo.3,uc010jkl.2_5end | |||
|cluster_id=chr5:176836577..176836584,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_10_at_F12_5end | |||
|id=chr5:176836577..176836584,- | |||
|ontology_enrichment_celltype=CL:0000181!8.35e-32!12;CL:0000417!8.35e-32!12;CL:0000668!8.35e-32!12;CL:0000414!8.35e-32!12;CL:0000412!8.35e-32!12;CL:0000182!8.35e-32!12;CL:0000223!4.29e-09!59;CL:0002535!6.42e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.56e-19;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.56e-19,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.73e-10;11!UBERON:0009497;1.19e-08;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.97e-39!19;UBERON:0006925!4.97e-39!19;UBERON:0008836!4.97e-39!19;UBERON:0008835!1.12e-33!22;UBERON:0003894!1.12e-33!22;UBERON:0009854!3.35e-32!23;UBERON:0007499!1.32e-29!25;UBERON:0009497!1.32e-29!25;UBERON:0000015!1.32e-29!25;UBERON:0002423!1.32e-29!25;UBERON:0006235!1.32e-29!25;UBERON:0004161!1.32e-29!25;UBERON:0005057!1.87e-28!26;UBERON:0009856!1.87e-28!26;UBERON:0002365!8.11e-24!31;UBERON:0002330!8.11e-24!31;UBERON:0002368!4.66e-21!35;UBERON:0003929!1.54e-17!54;UBERON:0000949!2.69e-16!45;UBERON:0005172!2.94e-13!55;UBERON:0005173!2.94e-13!55;UBERON:0002530!2.49e-12!59;UBERON:0002417!6.54e-12!61;UBERON:0000916!6.54e-12!61;UBERON:0005911!2.44e-11!82;UBERON:0006955!6.42e-09!2;UBERON:0004801!6.42e-09!2;UBERON:0001041!3.17e-07!98;UBERON:0004921!6.84e-07!129;UBERON:0004185!6.84e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.81e-33;19!UBERON:0006925;7.81e-33;19!UBERON:0002423;4.62e-25;25!UBERON:0002365;3.13e-20;31!UBERON:0002330;3.13e-20;31!UBERON:0002368;1.71e-17;33!UBERON:0000949;1.05e-12;43!UBERON:0005172;3.40e-09;52!UBERON:0005173;3.40e-09;52!UBERON:0002417;3.78e-07;58!UBERON:0000916;3.78e-07;58!UBERON:0002530;9.71e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.55e-33,19;UBERON:0006925,7.55e-33,19;UBERON:0008836,7.55e-33,19;UBERON:0008835,1.97e-28,22;UBERON:0003894,1.97e-28,22;UBERON:0009854,3.24e-27,23;UBERON:0007499,4.50e-25,25;UBERON:0009497,4.50e-25,25;UBERON:0000015,4.50e-25,25;UBERON:0002423,4.50e-25,25;UBERON:0006235,4.50e-25,25;UBERON:0004161,4.50e-25,25;UBERON:0009856,4.00e-24,26;UBERON:0002365,2.69e-20,31;UBERON:0002330,2.69e-20,31;UBERON:0002368,5.10e-18,35;UBERON:0000949,4.38e-14,45;UBERON:0003929,8.79e-12,54;UBERON:0005172,8.79e-12,54;UBERON:0005173,8.79e-12,54;UBERON:0002530,8.36e-11,59;UBERON:0002417,1.26e-10,60;UBERON:0000916,1.26e-10,60;UBERON:0005911,7.94e-08,82;UBERON:0001041,2.20e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8159062679296,4.91413608338813,15.9513274803979,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.10982980369284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.96664125748166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54435498075768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4397158076918,7.95041333473328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@F12 | |||
}} |
Latest revision as of 06:16, 17 September 2015
Short description: | p10@F12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_F12_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000253496, NM_000505, uc003mgo.3, uc010jkl.2_5end |
EntrezGene: | F12 |
HGNC: | 3530 |
UniProt: | P00748Q8IZZ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.56e-19 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 7.55e-33 | 19 |
digestive gland | 7.55e-33 | 19 |
liver bud | 7.55e-33 | 19 |
hepatic diverticulum | 1.97e-28 | 22 |
liver primordium | 1.97e-28 | 22 |
digestive tract diverticulum | 3.24e-27 | 23 |
epithelial sac | 4.50e-25 | 25 |
epithelium of foregut-midgut junction | 4.50e-25 | 25 |
anatomical boundary | 4.50e-25 | 25 |
hepatobiliary system | 4.50e-25 | 25 |
foregut-midgut junction | 4.50e-25 | 25 |
septum transversum | 4.50e-25 | 25 |
sac | 4.00e-24 | 26 |
exocrine gland | 2.69e-20 | 31 |
exocrine system | 2.69e-20 | 31 |
endocrine gland | 5.10e-18 | 35 |
endocrine system | 4.38e-14 | 45 |
gut epithelium | 8.79e-12 | 54 |
abdomen element | 8.79e-12 | 54 |
abdominal segment element | 8.79e-12 | 54 |
gland | 8.36e-11 | 59 |
abdominal segment of trunk | 1.26e-10 | 60 |
abdomen | 1.26e-10 | 60 |
endo-epithelium | 7.94e-08 | 82 |
foregut | 2.20e-07 | 87 |