FFCP PHASE1:Hg19::chr17:7297519..7297581,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57048 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16495 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=4bp_to_uc002ggl.2_5end | |||
|cluster_id=chr17:7297519..7297581,- | |||
|description=CAGE_peak_3_at_PLSCR3_5end | |||
|id=chr17:7297519..7297581,- | |||
|ontology_enrichment_celltype=CL:0002321!4.47e-25!248;CL:0000220!1.35e-24!246;CL:0000066!2.11e-18!254;CL:0000222!1.41e-15!119;CL:0000003!2.31e-13!722;CL:0000076!1.60e-12!62;CL:0000548!4.86e-12!679;CL:0000004!4.86e-12!679;CL:0000255!4.86e-12!679;CL:0000012!5.58e-12!682;CL:0000144!4.05e-11!625;CL:0000213!8.22e-10!57;CL:0000215!8.22e-10!57;CL:0002371!3.24e-09!591;CL:0000542!8.62e-09!53;CL:0000051!8.62e-09!53;CL:0000838!1.96e-08!52;CL:0000359!8.98e-08!32;CL:0000183!1.38e-07!59;CL:0002078!6.41e-07!44;CL:0000791!8.85e-07!18;CL:0000789!8.85e-07!18;CL:0002420!8.85e-07!18;CL:0002419!8.85e-07!18;CL:0000790!8.85e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.62e-07;32!CL:0002368;6.86e-07;13!CL:0000791;7.27e-07;18!CL:0000789;7.27e-07;18!CL:0002419;7.27e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.52e-25,250;CL:0000066,2.82e-18,253;CL:0000222,1.34e-15,121;CL:0000076,1.28e-12,63;CL:0000213,2.50e-10,58;CL:0000215,2.50e-10,58;CL:0000542,7.16e-09,53;CL:0000051,7.16e-09,53;CL:0000838,1.65e-08,52;CL:0000359,6.54e-08,32;CL:0002078,2.36e-07,45;CL:0000791,6.78e-07,18;CL:0000789,6.78e-07,18;CL:0002420,6.78e-07,18;CL:0002419,6.78e-07,18;CL:0000790,6.78e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;7.27e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!3.35e-13!110;UBERON:0002049!1.17e-12!79;UBERON:0007798!1.17e-12!79;UBERON:0001009!2.59e-12!113;UBERON:0000055!1.17e-11!69;UBERON:0001637!1.62e-10!42;UBERON:0003509!1.62e-10!42;UBERON:0004572!1.62e-10!42;UBERON:0004872!2.06e-10!84;UBERON:0001981!7.66e-10!60;UBERON:0007500!7.66e-10!60;UBERON:0004537!7.66e-10!60;UBERON:0006965!7.66e-10!60;UBERON:0003914!1.71e-09!118;UBERON:0000490!9.14e-08!138;UBERON:0004573!1.25e-07!33;UBERON:0004571!1.25e-07!33;UBERON:0000486!1.28e-07!82;UBERON:0002100!9.46e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.50e-08;42!UBERON:0003509;6.50e-08;42!UBERON:0004572;6.50e-08;42!UBERON:0003914;1.33e-07;74!UBERON:0004573;7.15e-07;33!UBERON:0004571;7.15e-07;33!UBERON:0007500;8.81e-07;56!UBERON:0001981;8.81e-07;56!UBERON:0004537;8.81e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,6.96e-13,109;UBERON:0002049,1.58e-12,78;UBERON:0007798,1.58e-12,78;UBERON:0001009,9.34e-12,112;UBERON:0000055,1.66e-11,68;UBERON:0001637,1.71e-10,42;UBERON:0003509,1.71e-10,42;UBERON:0004572,1.71e-10,42;UBERON:0004872,6.70e-10,83;UBERON:0003914,1.05e-09,117;UBERON:0007500,1.17e-09,59;UBERON:0001981,1.17e-09,59;UBERON:0004537,1.17e-09,59;UBERON:0006965,1.17e-09,59;UBERON:0004573,1.47e-07,33;UBERON:0004571,1.47e-07,33;UBERON:0000490,1.55e-07,148;UBERON:0000486,3.55e-07,83 | |||
|phase1_expression=2.72517568905835,2.99740733447376,2.39622486963151,3.00219895059391,2.68176656656373,0.872338524100369,2.53299878168311,0,1.30592814099919,16.2184398090996,39.0768654064559,8.08233076881637,12.3970479767373,4.08428964768154,4.30816588446291,2.6893005858071,3.01347264011988,5.11217063271161,6.34312638427659,4.30923703268758,6.73202281106035,5.95563970808367,1.14494394852423,3.42186062682211,3.26410862946487,5.57817861960044,6.65014774544561,4.171671409625,1.57345710739562,3.45446458287491,1.39334510984468,26.6632155098889,27.1085326900425,7.39508020333575,2.32401601740905,12.7952309238679,0.293600439334847,0.553995408531877,2.60707781711184,2.60413044859022,0.447830948479849,0.647787332037959,0,0.436194716338694,0.755751887377619,1.4555043671269,0,0,0,0.575384784644301,0.768482119587302,0.236482229888585,0.689491361473237,0,0,0.564727018627814,0.545812300115692,0.224723484445085,0.306083892370903,0.962787081228281,0,0.659702600373432,0.598390972864896,0,0,0,0,0.502497330513487,0,0.217188844705117,0.605399502633369,0,0,0,0.425208599930087,0.628975936525128,0.44931452458598,0.750884464207532,0.64290234678832,0.285012743741249,0.99458338599545,0,7.03984977845291,5.46138611262132,5.33705552318133,3.84057200309856,5.60554381850417,8.04653415936277,8.59358334620321,6.67837628174755,1.70763890732835,4.11066032559657,5.73409842187843,2.64342657158052,1.68152568894461,1.84368859342554,6.09800287352883,9.03924754323079,5.96244347098577,5.18278135711102,9.12582346574053,9.9424039204294,19.4826728407911,4.56782873229212,4.41908861212256,4.87374568083967,4.06205795647523,8.71020974134591,6.11278933531428,3.4531959966772,3.59255023121603,4.05724320029073,6.67289534229272,7.49114318651197,6.27213142829861,6.79856056185397,9.19729184644611,7.90343124610049,5.31341353240956,7.64556994377832,9.11516835398986,4.75226022224187,5.42070428679982,6.01537072425766,3.74792179657038,7.10331756132051,5.74789597844733,9.87873041801189,8.55808626507223,8.54463982908514,7.31420598941885,5.36560687762909,3.45228916977532,2.89151321907653,3.00802746381534,3.62116297402059,2.3858578411533,1.94653948121054,4.06499713805492,7.09534071880205,6.85111328406383,1.30979075497713,13.8432209551166,12.6066710546706,0.324547393654683,0.348259474598534,0.531831842075461,0,0,0,3.9752481473341,5.16140757063675,4.51282652089873,9.04492707078415,12.5849830862972,10.1793675517825,5.22487416342026,7.75250277507987,6.40379272836078,4.35136796594071,12.8905381474927,7.60272105718513,17.0843440283719,4.04429388380456,12.1521292182264,1.7859945656816,1.57170560838319,1.68917220724983,4.5994991239765,2.84779697870439,3.84723662253855,0,0,19.624232346414,3.97577561356255,8.61087479319142,6.09082231740807,1.43418310374407,2.83734705758686,6.16745360156538,9.60740961567345,13.813382711361,0.933633106199299,3.77189881795127,1.9615428373615,3.02714855289863,4.03323147135999,1.17160715916898,2.80944069147288,2.2818872861778,2.09228152772521,0.939475989150119,1.29498355494505,0.98315564691574,2.04154171254893,3.4393608847295,0.929932030581889,3.56400857184616,2.71993622206413,3.64064544775211,5.03032699271367,1.85169725349473,2.00189631795143,0.554128230968366,0.877955241761676,2.14541457059314,1.05166641234618,5.67160915800105,1.97328599257748,1.49490172172997,2.11931901159562,2.40072876867522,1.75189299705346,1.54584324027377,2.04728541964749,2.36286865137773,4.38466523225394,3.02920529092937,1.93304787148829,2.26304479546337,2.4850671476163,3.12331504505685,3.39121184620975,27.4430411491882,33.2750267120818,26.0992181803993,5.97671160035017,4.90360142789496,6.27447291495399,5.07939169575315,8.32658807889574,4.74470566798579,9.38697193978896,7.71889125831462,5.52539685409922,0.464367928031979,2.88751792667834,1.18306800039844,1.18009283054671,1.92808823906786,1.54411561825352,0.871517776369625,2.37270619111097,2.69662616320329,2.35465758150415,1.53898862778556,11.0723318193697,8.41450642820675,7.4083322039652,8.82052268313252,0,0,2.95394953340702,0.441463099414651,2.33678033231916,4.63233087806019,42.6928610239553,19.1082980537953,16.7883383927424,8.05519472879207,1.3032332212413,6.23960871167747,1.44331342025273,3.24605133930215,7.74897381956423,5.91902435820403,8.33373922637899,5.32711626256875,5.53143078571493,1.71697232418975,0,0.468008530278475,0.148631162288728,32.8068418953719,26.7091583836187,25.0941922119024,10.1201130654219,15.6942326797539,34.504441124869,0,0.264145302039678,0.207328115540772,1.29707958075265,0.75745460055828,0.507983154337352,1.90994212779139,3.51652341630141,3.4214489204541,0.616964956219941,0.901029173531752,0.857479297891735,3.02753927732474,2.61576041299968,1.7601188597028,6.59285750364667,17.8828222925941,0,2.39344304926383,5.2003718455683,2.05765899409714,1.41849132023278,3.46348832720929,2.00169191121407,1.62786481617433,4.93944202068461,1.30294473717494,2.13235169245527,0.791951872933429,6.02878754119172,11.3299349618038,14.2961377390342,0,0,0,4.31324739884849,2.29723871668228,2.85273810081437,5.06734573336527,5.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| |||
|short_description=p3@PLSCR3 | |||
}} |
Latest revision as of 09:32, 17 September 2015
Short description: | p3@PLSCR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLSCR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_uc002ggl.2_5end |
EntrezGene: | PLSCR3 |
HGNC: | 16495 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.52e-25 | 250 |
epithelial cell | 2.82e-18 | 253 |
mesodermal cell | 1.34e-15 | 121 |
squamous epithelial cell | 1.28e-12 | 63 |
lining cell | 2.50e-10 | 58 |
barrier cell | 2.50e-10 | 58 |
lymphocyte | 7.16e-09 | 53 |
common lymphoid progenitor | 7.16e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.65e-08 | 52 |
vascular associated smooth muscle cell | 6.54e-08 | 32 |
meso-epithelial cell | 2.36e-07 | 45 |
mature alpha-beta T cell | 6.78e-07 | 18 |
alpha-beta T cell | 6.78e-07 | 18 |
immature T cell | 6.78e-07 | 18 |
mature T cell | 6.78e-07 | 18 |
immature alpha-beta T cell | 6.78e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 6.96e-13 | 109 |
vasculature | 1.58e-12 | 78 |
vascular system | 1.58e-12 | 78 |
circulatory system | 9.34e-12 | 112 |
vessel | 1.66e-11 | 68 |
artery | 1.71e-10 | 42 |
arterial blood vessel | 1.71e-10 | 42 |
arterial system | 1.71e-10 | 42 |
splanchnic layer of lateral plate mesoderm | 6.70e-10 | 83 |
epithelial tube | 1.05e-09 | 117 |
epithelial tube open at both ends | 1.17e-09 | 59 |
blood vessel | 1.17e-09 | 59 |
blood vasculature | 1.17e-09 | 59 |
vascular cord | 1.17e-09 | 59 |
systemic artery | 1.47e-07 | 33 |
systemic arterial system | 1.47e-07 | 33 |
unilaminar epithelium | 1.55e-07 | 148 |
multilaminar epithelium | 3.55e-07 | 83 |