FFCP PHASE2:Hg19::chr10:17278167..17278185,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:7431 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript |HGNC=HGNC:12692...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=7431 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC= | |HGNC=12692 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 10:53, 17 September 2015
| Short description: | p12@VIM |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_12_at_VIM_5end |
| Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
| Association with transcript: | -399bp_to_BC031031_5end |
| EntrezGene: | VIM |
| HGNC: | 12692 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p12@VIM |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid leukocyte | 1.30e-38 | 72 |
| classical monocyte | 1.79e-38 | 42 |
| CD14-positive, CD16-negative classical monocyte | 1.79e-38 | 42 |
| defensive cell | 3.21e-37 | 48 |
| phagocyte | 3.21e-37 | 48 |
| myeloid lineage restricted progenitor cell | 2.61e-35 | 66 |
| granulocyte monocyte progenitor cell | 1.02e-34 | 67 |
| monopoietic cell | 6.19e-29 | 59 |
| monocyte | 6.19e-29 | 59 |
| monoblast | 6.19e-29 | 59 |
Showing 1 to 10 of 30 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 4.85e-33 | 76 |
| bone element | 2.74e-30 | 82 |
| skeletal element | 3.49e-27 | 90 |
| immune system | 3.73e-26 | 93 |
| hematopoietic system | 1.40e-24 | 98 |
| blood island | 1.40e-24 | 98 |
| skeletal system | 5.40e-24 | 100 |
| hemolymphoid system | 7.29e-22 | 108 |
| connective tissue | 1.40e-12 | 371 |
| musculoskeletal system | 1.98e-12 | 167 |
Showing 1 to 10 of 11 entries
