FFCP PHASE1:Hg19::chr16:67997947..67997960,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6560 | |EntrezGene=6560 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10913 | |HGNC=10913 | ||
|TSSclassifier=strong | |||
|UniProt=F5H0S9,B7ZAV0 | |UniProt=F5H0S9,B7ZAV0 | ||
|association_with_transcript=7bp_to_ENST00000537830,NM_001145963,uc002evb.2,uc010ceu.2_5end | |association_with_transcript=7bp_to_ENST00000537830,NM_001145963,uc002evb.2,uc010ceu.2_5end | ||
|cluster_id=chr16:67997947..67997960,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_8_at_SLC12A4_5end | |description=CAGE_peak_8_at_SLC12A4_5end | ||
|id=chr16:67997947..67997960,- | |id=chr16:67997947..67997960,- | ||
|ontology_enrichment_celltype=CL:0002322!1.04e-09!5;CL:0000039!2.38e-07!7;CL:0000586!2.38e-07!7 | |ontology_enrichment_celltype=CL:0002322!1.04e-09!5;CL:0000039!2.38e-07!7;CL:0000586!2.38e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;4.73e-17;7!CL:0000586;4.73e-17;7!CL:0000083;2.35e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.13e-17,7;CL:0000586,5.13e-17,7;CL:0000083,2.11e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.17e-26;10!UBERON:0005564;3.17e-26;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;2.73e-29;1!DOID:10165;2.73e-29;1!DOID:1798;2.73e-29;1!DOID:1793;2.35e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.78e-29,1;DOID:10165,1.78e-29,1;DOID:1798,1.78e-29,1;DOID:1793,2.11e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.29e-15!115;UBERON:0000473!9.64e-10!8;UBERON:0001049!9.54e-09!57;UBERON:0005068!9.54e-09!57;UBERON:0006241!9.54e-09!57;UBERON:0007135!9.54e-09!57;UBERON:0002616!2.49e-08!59;UBERON:0003075!5.30e-08!86;UBERON:0007284!5.30e-08!86;UBERON:0005743!7.35e-08!86;UBERON:0002780!1.46e-07!41;UBERON:0001890!1.46e-07!41;UBERON:0006240!1.46e-07!41;UBERON:0001017!1.90e-07!82;UBERON:0002346!1.91e-07!90;UBERON:0000955!2.16e-07!69;UBERON:0006238!2.16e-07!69;UBERON:0003080!2.53e-07!42;UBERON:0003135!6.02e-07!11;UBERON:0002360!9.05e-07!2;UBERON:0000094!9.05e-07!2;UBERON:0007645!9.05e-07!2 | |ontology_enrichment_uberon=UBERON:0007023!1.29e-15!115;UBERON:0000473!9.64e-10!8;UBERON:0001049!9.54e-09!57;UBERON:0005068!9.54e-09!57;UBERON:0006241!9.54e-09!57;UBERON:0007135!9.54e-09!57;UBERON:0002616!2.49e-08!59;UBERON:0003075!5.30e-08!86;UBERON:0007284!5.30e-08!86;UBERON:0005743!7.35e-08!86;UBERON:0002780!1.46e-07!41;UBERON:0001890!1.46e-07!41;UBERON:0006240!1.46e-07!41;UBERON:0001017!1.90e-07!82;UBERON:0002346!1.91e-07!90;UBERON:0000955!2.16e-07!69;UBERON:0006238!2.16e-07!69;UBERON:0003080!2.53e-07!42;UBERON:0003135!6.02e-07!11;UBERON:0002360!9.05e-07!2;UBERON:0000094!9.05e-07!2;UBERON:0007645!9.05e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.50e-32;8!UBERON:0003135;6.35e-24;11!UBERON:0000991;6.44e-13;21!UBERON:0003101;2.30e-12;22!UBERON:0000079;2.30e-12;22!UBERON:0002323;1.32e-08;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.77e-32,8;UBERON:0003135,7.14e-24,11;UBERON:0000991,6.85e-13,21;UBERON:0009196,6.85e-13,21;UBERON:0009117,6.85e-13,21;UBERON:0005564,6.85e-13,21;UBERON:0004176,2.44e-12,22;UBERON:0003101,2.44e-12,22;UBERON:0000079,2.44e-12,22;UBERON:0002323,2.27e-10,46;UBERON:0004458,9.18e-10,49;UBERON:0003886,6.69e-09,54;UBERON:0002553,6.28e-08,61 | |||
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| ||
|short_description=p8@SLC12A4 | |short_description=p8@SLC12A4 | ||
}} | }} |
Latest revision as of 12:34, 17 September 2015
Short description: | p8@SLC12A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SLC12A4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 7bp_to_ENST00000537830, NM_001145963, uc002evb.2, uc010ceu.2_5end |
EntrezGene: | SLC12A4 |
HGNC: | 10913 |
UniProt: | F5H0S9B7ZAV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.13e-17 | 7 |
germ cell | 5.13e-17 | 7 |
epithelial cell of pancreas | 2.11e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 1.77e-32 | 8 |
male reproductive organ | 7.14e-24 | 11 |
gonad | 6.85e-13 | 21 |
indifferent external genitalia | 6.85e-13 | 21 |
indifferent gonad | 6.85e-13 | 21 |
gonad primordium | 6.85e-13 | 21 |
external genitalia | 2.44e-12 | 22 |
male organism | 2.44e-12 | 22 |
male reproductive system | 2.44e-12 | 22 |
body cavity | 2.27e-10 | 46 |
body cavity or lining | 9.18e-10 | 49 |
body cavity precursor | 6.69e-09 | 54 |
anatomical cavity | 6.28e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.78e-29 | 1 |
endocrine pancreas cancer | 1.78e-29 | 1 |
pancreatic endocrine carcinoma | 1.78e-29 | 1 |
pancreatic cancer | 2.11e-08 | 4 |