FFCP PHASE1:Hg19::chr1:155402929..155402937,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=33310 | |HGNC=33310 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_ENST00000413175_5end | |association_with_transcript=-31bp_to_ENST00000413175_5end | ||
|cluster_id=chr1:155402929..155402937,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_1_at_POU5F1P4_5end | |description=CAGE_peak_1_at_POU5F1P4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!3.18e-66!5;CL:0000039!3.55e-30!7;CL:0000586!3.55e-30!7;CL:0000540!5.95e-21!6;CL:0000031!5.95e-21!6;CL:0000404!5.95e-21!6;CL:0000047!7.00e-16!8;CL:0000148!1.27e-12!10;CL:0000541!1.27e-12!10;CL:0000147!3.54e-09!14;CL:0000133!1.25e-07!59 | |ontology_enrichment_celltype=CL:0002322!3.18e-66!5;CL:0000039!3.55e-30!7;CL:0000586!3.55e-30!7;CL:0000540!5.95e-21!6;CL:0000031!5.95e-21!6;CL:0000404!5.95e-21!6;CL:0000047!7.00e-16!8;CL:0000148!1.27e-12!10;CL:0000541!1.27e-12!10;CL:0000147!3.54e-09!14;CL:0000133!1.25e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.99e-63;5!CL:0000540;1.38e-30;6!CL:0000404;1.38e-30;6!CL:0002321;1.75e-21;15!CL:0000039;3.53e-12;7!CL:0000586;3.53e-12;7!CL:0000148;6.16e-09;10!CL:0002319;2.60e-07;25 | |ontology_enrichment_celltype_v019=CL:0002322;2.99e-63;5!CL:0000540;1.38e-30;6!CL:0000404;1.38e-30;6!CL:0002321;1.75e-21;15!CL:0000039;3.53e-12;7!CL:0000586;3.53e-12;7!CL:0000148;6.16e-09;10!CL:0002319;2.60e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.54e-63,5;CL:0000540,1.25e-30,6;CL:0000031,1.25e-30,6;CL:0000404,1.25e-30,6;CL:0000047,3.53e-23,8;CL:0000039,3.96e-12,7;CL:0000586,3.96e-12,7;CL:0000148,6.04e-09,10;CL:0000541,6.04e-09,10;CL:0000133,2.53e-08,59;CL:0002319,2.54e-07,25;CL:0000221,7.24e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.38e-30;6!UBERON:0009117;8.28e-09;10!UBERON:0005564;8.28e-09;10 | |ontology_enrichment_development_v019=CL:0000031;1.38e-30;6!UBERON:0009117;8.28e-09;10!UBERON:0005564;8.28e-09;10 | ||
|ontology_enrichment_disease=DOID:3095!4.96e-21!22;DOID:2994!4.96e-21!22 | |ontology_enrichment_disease=DOID:3095!4.96e-21!22;DOID:2994!4.96e-21!22 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!1.84e-26!8;UBERON:0003135!2.35e-19!11;UBERON:0000991!1.47e-15!21;UBERON:0009196!1.47e-15!21;UBERON:0009117!1.47e-15!21;UBERON:0005564!1.47e-15!21;UBERON:0004176!7.46e-15!22;UBERON:0003101!7.92e-10!22;UBERON:0000079!7.92e-10!22;UBERON:0002323!4.41e-07!46;UBERON:0003133!8.78e-07!48 | |ontology_enrichment_uberon=UBERON:0000473!1.84e-26!8;UBERON:0003135!2.35e-19!11;UBERON:0000991!1.47e-15!21;UBERON:0009196!1.47e-15!21;UBERON:0009117!1.47e-15!21;UBERON:0005564!1.47e-15!21;UBERON:0004176!7.46e-15!22;UBERON:0003101!7.92e-10!22;UBERON:0000079!7.92e-10!22;UBERON:0002323!4.41e-07!46;UBERON:0003133!8.78e-07!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.90e-11;8!UBERON:0003135;4.34e-08;11!UBERON:0000922;1.51e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0000473;8.90e-11;8!UBERON:0003135;4.34e-08;11!UBERON:0000922;1.51e-07;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.82e-11,8;UBERON:0003135,4.66e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07355300420312,1.59035721985782,1.2781333715647,0.829288440122964,4.28945446488568,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21506296930038,3.57602535152808,2.9080823662043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.546327859818478,0,0.815910637935854,1.06886962106224,0.918948995348449,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07355300420312,1.59035721985782,1.2781333715647,0.829288440122964,4.28945446488568,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21506296930038,3.57602535152808,2.9080823662043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.546327859818478,0,0.815910637935854,1.06886962106224,0.918948995348449,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@POU5F1P4 | |short_description=p1@POU5F1P4 | ||
}} | }} |
Latest revision as of 12:46, 17 September 2015
Short description: | p1@POU5F1P4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_POU5F1P4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -31bp_to_ENST00000413175_5end |
EntrezGene: | NA |
HGNC: | 33310 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.54e-63 | 5 |
neuron | 1.25e-30 | 6 |
neuroblast | 1.25e-30 | 6 |
electrically signaling cell | 1.25e-30 | 6 |
neuronal stem cell | 3.53e-23 | 8 |
germ line cell | 3.96e-12 | 7 |
germ cell | 3.96e-12 | 7 |
melanocyte | 6.04e-09 | 10 |
melanoblast | 6.04e-09 | 10 |
neurectodermal cell | 2.53e-08 | 59 |
neural cell | 2.54e-07 | 25 |
ectodermal cell | 7.24e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 9.82e-11 | 8 |
male reproductive organ | 4.66e-08 | 11 |