FFCP PHASE1:Hg19::chr9:6716478..6716551,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:6716478..6716551,+ to FFCP PHASE1:Hg19::chr9:6716478..6716551,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23081 | |EntrezGene=23081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=17071 | |HGNC=17071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000452643,uc003zkd.2,uc003zke.2_5end | |||
|cluster_id=chr9:6716478..6716551,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_10_at_KDM4C_5end | |||
|id=chr9:6716478..6716551,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.04e-11!52;CL:0000542!4.93e-11!53;CL:0000051!4.93e-11!53;CL:0000945!3.92e-07!24;CL:0000826!3.92e-07!24;CL:0000084!6.38e-07!25;CL:0000827!6.38e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.81e-08;12!CL:0000945;2.10e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,4.56e-10,3;CL:0000182,1.18e-08,12;CL:0000945,1.98e-08,24;CL:0000826,1.98e-08,24;CL:0000838,2.83e-08,52;CL:0000542,4.65e-08,53;CL:0000051,4.65e-08,53;CL:0000785,2.30e-07,2;CL:0000955,2.30e-07,2;CL:0000818,2.30e-07,2;CL:0000954,2.30e-07,2;CL:0000816,2.30e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.96e-09;11!UBERON:0009497;1.55e-07;13!CL:0000954;2.16e-07;2 | |||
|ontology_enrichment_disease=DOID:305!4.13e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:4074;7.08e-07;2!DOID:4905;7.08e-07;2!DOID:3498;7.08e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,3.40e-07,137;DOID:4074,6.49e-07,2;DOID:4905,6.49e-07,2;DOID:3498,6.49e-07,2;DOID:162,9.47e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.44e-07!25;UBERON:0000015!1.44e-07!25;UBERON:0002423!1.44e-07!25;UBERON:0006235!1.44e-07!25;UBERON:0004161!1.44e-07!25;UBERON:0004921!1.96e-07!129;UBERON:0004185!1.96e-07!129;UBERON:0005057!3.26e-07!26;UBERON:0007023!8.82e-07!115;UBERON:0009854!8.87e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.04e-09;19!UBERON:0006925;7.04e-09;19!UBERON:0002423;3.32e-08;25!UBERON:0000160;2.33e-07;17!UBERON:0000949;6.88e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009854,3.22e-11,23;UBERON:0008835,1.08e-09,22;UBERON:0003894,1.08e-09,22;UBERON:0009856,1.10e-09,26;UBERON:0002107,5.11e-09,19;UBERON:0006925,5.11e-09,19;UBERON:0008836,5.11e-09,19;UBERON:0000949,2.17e-08,45;UBERON:0007499,2.54e-08,25;UBERON:0009497,2.54e-08,25;UBERON:0000015,2.54e-08,25;UBERON:0002423,2.54e-08,25;UBERON:0006235,2.54e-08,25;UBERON:0004161,2.54e-08,25;UBERON:0000160,3.06e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,2.21671591514854,1.81034797021462,0,0,0,0,0,0,0,0,1.76160263600908,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.545812300115692,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,1.05353633910031,0.590129310341499,0.393010762749165,0,0,0,0,0,1.11410456885174,0,0.443067789167242,0.270803863765016,0.25618263945135,0.650296737799391,0.164437904603676,0,0,0.14828656316206,0.535081656179426,0,1.24640276967323,0.383220493601921,0.34362744548263,0,0.318565414324097,0.651083453856419,0,0,0.383959833463255,0,0.236777252044017,0,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,25.082492957812,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0,0.241011029883482,0.110293972732394,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,19.0132552232746,0.982827216677626,5.31710916013264,0.882926198829301,3.44367627920718,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02148623979056,0,0,0,0,0,0,0,0,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,3.91555844261345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,3.29503302718727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,2.59684583357601,5.83363115456996,4.94221445459349,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0.321176150207399,0,0.425846237690326,0.687010689511529,0,0,0,0,1.9488432172667,0,0,0,4.22961015263549,1.68426486367398,0,0,10.9214516591929,0,0,0,0,0.994147647766298,0.562677665642051,0,7.91058596288446,0,0,1.10513566212459,0.503865495708552,0,0,0,0.0898683511473268,0.895105873378046,0,0.0986434056369336,0,0,0,0.0927680981618513,0,1.30213880542617,1.22443999994674,0,0,0.254253650292766,1.41832609060762,1.37897349296586,0,0.694499979733169,0,0.60298219312704,0,0,0,0.219385397153973,0,0,0,0,0,0.718061155278177,0.54323685961004,0.31900115973192,0.0915975934018623,1.06606955203727,4.08773192782946,0,1.99454018280188,0,0,0,0,0,0,0,4.09923907158428,0,0.995261931078505,3.44984501563023,0,0,0,0,0,0,0,11.3121969313713,1.56531695145672,3.15614493394321,1.57833761139756,1.20990716048664,0,0,0,0,0,0,0,0,0.853828638089378,0,0,0,1.13176968554523,0.52418000472609,0,0,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0.0801588202515337,0.426905989478705,0,0,0,2.05913997434357,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0,0,3.49487848582361,1.6544468284517,1.56590130924216,1.95470277177136,0,0,0,0.408610218334727,0,0,0,0,0.77380195455795,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6983130585,1.32506888912221,0,0,0,1.40963004463334,0,0.157204305099666,0,0,6.7187954845301,0,0,0,0,0,0,1.41348686625211,0,0,0.1251909307065,0,0,0,0,0,0.151649117541648,0,0,0,2.02889440055155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0,0,0,0,2.74705760366215,0,0,1.54993481694734,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,6.25211208986474,0,0,5.76638736246476,0.202612753855184,0,0,0,0,0,0,0,0,0.535701835878287,0.336283722218824,1.21393120847326,0.682986574053893,0.0887023701626388,2.18944576355981,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0.628462359664008,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0.223710863595585,0,0.487671699929078,0,0,0,0,1.63757624423474,0,0,0,0,0.603851374266694,3.08696632431779,0.437119121007915,26.3377685962453,0,7.54164950725203,0,0,0,0,0.0939839179798536,0.322289439867886,0.299823467774787,0.892769693028288,10.2339512797551,0,0.730336388246517,0,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0.752122617877125,39.9353739610122,97.538943376849,0,0.20686599172379,0.426467963801962,0,0.839655827868079,2.79336214331361,0,0,0,0,0,1.0776328482334,0.0717222053926763,0.332660356546013,0.325613074443898,1.60091018816573,0,0,0,0,0,0.665756774185513,0,2.8851164307291 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,2.21671591514854,1.81034797021462,0,0,0,0,0,0,0,0,1.76160263600908,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.545812300115692,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,1.05353633910031,0.590129310341499,0.393010762749165,0,0,0,0,0,1.11410456885174,0,0.443067789167242,0.270803863765016,0.25618263945135,0.650296737799391,0.164437904603676,0,0,0.14828656316206,0.535081656179426,0,1.24640276967323,0.383220493601921,0.34362744548263,0,0.318565414324097,0.651083453856419,0,0,0.383959833463255,0,0.236777252044017,0,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,25.082492957812,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0,0.241011029883482,0.110293972732394,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,19.0132552232746,0.982827216677626,5.31710916013264,0.882926198829301,3.44367627920718,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02148623979056,0,0,0,0,0,0,0,0,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,3.91555844261345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,3.29503302718727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,2.59684583357601,5.83363115456996,4.94221445459349,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0.321176150207399,0,0.425846237690326,0.687010689511529,0,0,0,0,1.9488432172667,0,0,0,4.22961015263549,1.68426486367398,0,0,10.9214516591929,0,0,0,0,0.994147647766298,0.562677665642051,0,7.91058596288446,0,0,1.10513566212459,0.503865495708552,0,0,0,0.0898683511473268,0.895105873378046,0,0.0986434056369336,0,0,0,0.0927680981618513,0,1.30213880542617,1.22443999994674,0,0,0.254253650292766,1.41832609060762,1.37897349296586,0,0.694499979733169,0,0.60298219312704,0,0,0,0.219385397153973,0,0,0,0,0,0.718061155278177,0.54323685961004,0.31900115973192,0.0915975934018623,1.06606955203727,4.08773192782946,0,1.99454018280188,0,0,0,0,0,0,0,4.09923907158428,0,0.995261931078505,3.44984501563023,0,0,0,0,0,0,0,11.3121969313713,1.56531695145672,3.15614493394321,1.57833761139756,1.20990716048664,0,0,0,0,0,0,0,0,0.853828638089378,0,0,0,1.13176968554523,0.52418000472609,0,0,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0.0801588202515337,0.426905989478705,0,0,0,2.05913997434357,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0,0,3.49487848582361,1.6544468284517,1.56590130924216,1.95470277177136,0,0,0,0.408610218334727,0,0,0,0,0.77380195455795,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6983130585,1.32506888912221,0,0,0,1.40963004463334,0,0.157204305099666,0,0,6.7187954845301,0,0,0,0,0,0,1.41348686625211,0,0,0.1251909307065,0,0,0,0,0,0.151649117541648,0,0,0,2.02889440055155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0,0,0,0,2.74705760366215,0,0,1.54993481694734,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,6.25211208986474,0,0,5.76638736246476,0.202612753855184,0,0,0,0,0,0,0,0,0.535701835878287,0.336283722218824,1.21393120847326,0.682986574053893,0.0887023701626388,2.18944576355981,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0.628462359664008,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0.223710863595585,0,0.487671699929078,0,0,0,0,1.63757624423474,0,0,0,0,0.603851374266694,3.08696632431779,0.437119121007915,26.3377685962453,0,7.54164950725203,0,0,0,0,0.0939839179798536,0.322289439867886,0.299823467774787,0.892769693028288,10.2339512797551,0,0.730336388246517,0,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0.752122617877125,39.9353739610122,97.538943376849,0,0.20686599172379,0.426467963801962,0,0.839655827868079,2.79336214331361,0,0,0,0,0,1.0776328482334,0.0717222053926763,0.332660356546013,0.325613074443898,1.60091018816573,0,0,0,0,0,0.665756774185513,0,2.8851164307291 | ||
|short_description=p10@KDM4C | |||
}} | }} |
Latest revision as of 15:12, 17 September 2015
Short description: | p10@KDM4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_KDM4C_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000452643, uc003zkd.2, uc003zke.2_5end |
EntrezGene: | KDM4C |
HGNC: | 17071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 4.56e-10 | 3 |
hepatocyte | 1.18e-08 | 12 |
lymphocyte of B lineage | 1.98e-08 | 24 |
pro-B cell | 1.98e-08 | 24 |
lymphoid lineage restricted progenitor cell | 2.83e-08 | 52 |
lymphocyte | 4.65e-08 | 53 |
common lymphoid progenitor | 4.65e-08 | 53 |
mature B cell | 2.30e-07 | 2 |
pre-B-II cell | 2.30e-07 | 2 |
transitional stage B cell | 2.30e-07 | 2 |
small pre-B-II cell | 2.30e-07 | 2 |
immature B cell | 2.30e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
digestive tract diverticulum | 3.22e-11 | 23 |
hepatic diverticulum | 1.08e-09 | 22 |
liver primordium | 1.08e-09 | 22 |
sac | 1.10e-09 | 26 |
liver | 5.11e-09 | 19 |
digestive gland | 5.11e-09 | 19 |
liver bud | 5.11e-09 | 19 |
endocrine system | 2.17e-08 | 45 |
epithelial sac | 2.54e-08 | 25 |
epithelium of foregut-midgut junction | 2.54e-08 | 25 |
anatomical boundary | 2.54e-08 | 25 |
hepatobiliary system | 2.54e-08 | 25 |
foregut-midgut junction | 2.54e-08 | 25 |
septum transversum | 2.54e-08 | 25 |
intestine | 3.06e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 3.40e-07 | 137 |
pancreas adenocarcinoma | 6.49e-07 | 2 |
pancreatic carcinoma | 6.49e-07 | 2 |
pancreatic ductal adenocarcinoma | 6.49e-07 | 2 |
cancer | 9.47e-07 | 235 |