FFCP PHASE1:Hg19::chr20:657284..657307,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85508 | |EntrezGene=85508 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15952 | |HGNC=15952 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ03 | |UniProt=Q9NQ03 | ||
|association_with_transcript=-459bp_to_ENST00000246104_5end | |association_with_transcript=-459bp_to_ENST00000246104_5end | ||
|cluster_id=chr20:657284..657307,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_1_at_SCRT2_5end | |description=CAGE_peak_1_at_SCRT2_5end | ||
|id=chr20:657284..657307,- | |id=chr20:657284..657307,- | ||
|ontology_enrichment_celltype=CL:0002319!1.19e-13!25;CL:0000133!2.21e-11!59;CL:0000047!8.10e-10!8;CL:0000221!8.68e-09!71;CL:0000242!1.76e-07!2;CL:0000333!3.38e-07!41 | |ontology_enrichment_celltype=CL:0002319!1.19e-13!25;CL:0000133!2.21e-11!59;CL:0000047!8.10e-10!8;CL:0000221!8.68e-09!71;CL:0000242!1.76e-07!2;CL:0000333!3.38e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000123;4.67e-20;2!CL:0000242;4.67e-20;2!CL:0002319;9.95e-17;25!CL:0000540;4.08e-15;6!CL:0000404;4.08e-15;6!CL:0000167;1.46e-10;1!CL:0000164;1.46e-10;1!CL:0000502;1.46e-10;1!CL:0000172;1.46e-10;1!CL:0000173;1.46e-10;1!CL:0000312;1.40e-08;5!CL:0000333;1.76e-08;5!CL:0000240;2.74e-07;6!CL:0000311;2.74e-07;6!CL:0000079;2.74e-07;6!CL:0000237;2.74e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.45e-20,2;CL:0000047,1.39e-19,8;CL:0002319,9.83e-17,25;CL:0000540,3.98e-15,6;CL:0000031,3.98e-15,6;CL:0000404,3.98e-15,6;CL:0000133,3.80e-14,59;CL:0000221,2.10e-11,72;CL:0000167,1.33e-10,1;CL:0000164,1.33e-10,1;CL:0000502,1.33e-10,1;CL:0000172,1.33e-10,1;CL:0000173,1.33e-10,1;CL:0002351,1.33e-10,1;CL:0000312,1.37e-08,5;CL:0000240,2.69e-07,6;CL:0000311,2.69e-07,6;CL:0000079,2.69e-07,6;CL:0000237,2.69e-07,6;CL:0000036,2.69e-07,6;CL:0000357,2.69e-07,6;CL:0000114,2.69e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;4.08e-15;6!CL:0002351;1.46e-10;1!CL:0000357;2.74e-07;6!CL:0000114;2.74e-07;6!CL:0000133;4.10e-07;59 | |||
|ontology_enrichment_disease=DOID:169!1.66e-08!6 | |ontology_enrichment_disease=DOID:169!1.66e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:169;1.27e-14;6!DOID:4430;1.46e-10;1!DOID:2355;1.46e-10;1!DOID:171;5.40e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.24e-14,6;DOID:4430,1.33e-10,1;DOID:2355,1.77e-10,1;DOID:171,5.32e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.56e-31!94;UBERON:0001016!1.56e-31!94;UBERON:0005743!3.60e-29!86;UBERON:0001017!7.05e-29!82;UBERON:0001049!8.34e-22!57;UBERON:0005068!8.34e-22!57;UBERON:0006241!8.34e-22!57;UBERON:0007135!8.34e-22!57;UBERON:0001869!1.70e-20!32;UBERON:0000955!2.51e-20!69;UBERON:0006238!2.51e-20!69;UBERON:0001893!4.47e-19!34;UBERON:0002616!6.99e-19!59;UBERON:0000956!2.22e-18!25;UBERON:0000203!2.22e-18!25;UBERON:0002791!1.84e-17!33;UBERON:0002780!3.06e-17!41;UBERON:0001890!3.06e-17!41;UBERON:0006240!3.06e-17!41;UBERON:0001950!3.62e-17!20;UBERON:0004121!5.97e-17!169;UBERON:0002020!7.56e-17!34;UBERON:0003528!7.56e-17!34;UBERON:0003080!9.84e-17!42;UBERON:0003075!1.22e-16!86;UBERON:0007284!1.22e-16!86;UBERON:0000924!2.47e-16!173;UBERON:0006601!2.47e-16!173;UBERON:0002346!1.33e-15!90;UBERON:0002619!1.97e-15!22;UBERON:0003056!3.10e-13!61;UBERON:0000033!1.15e-09!123;UBERON:0000153!6.27e-09!129;UBERON:0007811!6.27e-09!129;UBERON:0000200!1.65e-07!6 | |ontology_enrichment_uberon=UBERON:0000073!1.56e-31!94;UBERON:0001016!1.56e-31!94;UBERON:0005743!3.60e-29!86;UBERON:0001017!7.05e-29!82;UBERON:0001049!8.34e-22!57;UBERON:0005068!8.34e-22!57;UBERON:0006241!8.34e-22!57;UBERON:0007135!8.34e-22!57;UBERON:0001869!1.70e-20!32;UBERON:0000955!2.51e-20!69;UBERON:0006238!2.51e-20!69;UBERON:0001893!4.47e-19!34;UBERON:0002616!6.99e-19!59;UBERON:0000956!2.22e-18!25;UBERON:0000203!2.22e-18!25;UBERON:0002791!1.84e-17!33;UBERON:0002780!3.06e-17!41;UBERON:0001890!3.06e-17!41;UBERON:0006240!3.06e-17!41;UBERON:0001950!3.62e-17!20;UBERON:0004121!5.97e-17!169;UBERON:0002020!7.56e-17!34;UBERON:0003528!7.56e-17!34;UBERON:0003080!9.84e-17!42;UBERON:0003075!1.22e-16!86;UBERON:0007284!1.22e-16!86;UBERON:0000924!2.47e-16!173;UBERON:0006601!2.47e-16!173;UBERON:0002346!1.33e-15!90;UBERON:0002619!1.97e-15!22;UBERON:0003056!3.10e-13!61;UBERON:0000033!1.15e-09!123;UBERON:0000153!6.27e-09!129;UBERON:0007811!6.27e-09!129;UBERON:0000200!1.65e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.76e-08;5!UBERON:0002410;1.76e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.35e-11,89;UBERON:0000013,1.79e-08,5;UBERON:0002410,1.79e-08,5;UBERON:0001017,3.08e-08,81;UBERON:0004121,2.97e-07,171;UBERON:0000924,2.97e-07,171;UBERON:0006601,2.97e-07,171 | |||
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| ||
|short_description=p1@SCRT2 | |short_description=p1@SCRT2 | ||
}} | }} |
Latest revision as of 15:55, 17 September 2015
Short description: | p1@SCRT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCRT2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -459bp_to_ENST00000246104_5end |
EntrezGene: | SCRT2 |
HGNC: | 15952 |
UniProt: | Q9NQ03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.45e-20 | 2 |
neuronal stem cell | 1.39e-19 | 8 |
neural cell | 9.83e-17 | 25 |
neuron | 3.98e-15 | 6 |
neuroblast | 3.98e-15 | 6 |
electrically signaling cell | 3.98e-15 | 6 |
neurectodermal cell | 3.80e-14 | 59 |
ectodermal cell | 2.10e-11 | 72 |
peptide hormone secreting cell | 1.33e-10 | 1 |
enteroendocrine cell | 1.33e-10 | 1 |
type D enteroendocrine cell | 1.33e-10 | 1 |
somatostatin secreting cell | 1.33e-10 | 1 |
pancreatic D cell | 1.33e-10 | 1 |
progenitor cell of endocrine pancreas | 1.33e-10 | 1 |
keratinocyte | 1.37e-08 | 5 |
stratified squamous epithelial cell | 2.69e-07 | 6 |
keratin accumulating cell | 2.69e-07 | 6 |
stratified epithelial cell | 2.69e-07 | 6 |
keratinizing barrier epithelial cell | 2.69e-07 | 6 |
epithelial fate stem cell | 2.69e-07 | 6 |
stratified epithelial stem cell | 2.69e-07 | 6 |
surface ectodermal cell | 2.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.35e-11 | 89 |
sympathetic nervous system | 1.79e-08 | 5 |
autonomic nervous system | 1.79e-08 | 5 |
central nervous system | 3.08e-08 | 81 |
ectoderm-derived structure | 2.97e-07 | 171 |
ectoderm | 2.97e-07 | 171 |
presumptive ectoderm | 2.97e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.24e-14 | 6 |
somatostatinoma | 1.33e-10 | 1 |
anemia | 1.77e-10 | 1 |
neuroectodermal tumor | 5.32e-09 | 10 |