FFCP PHASE1:Hg19::chr19:38423014..38423072,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23094 | |EntrezGene=23094 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23801 | |HGNC=23801 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=30bp_to_ENST00000476317_5end | |association_with_transcript=30bp_to_ENST00000476317_5end | ||
|cluster_id=chr19:38423014..38423072,+ | |||
|coexpression_cluster_id=C298 | |||
|description=CAGE_peak_3_at_SIPA1L3_5end | |description=CAGE_peak_3_at_SIPA1L3_5end | ||
|id=chr19:38423014..38423072,+ | |id=chr19:38423014..38423072,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.78e-17!254;CL:0000076!1.70e-07!62 | |ontology_enrichment_celltype=CL:0000066!2.78e-17!254;CL:0000076!1.70e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.15e-13;10!CL:1000494;2.15e-13;10!CL:1000497;3.82e-11;17!CL:0002518;3.82e-11;17!CL:1000449;1.57e-10;15!CL:0000077;4.39e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.81e-14,253;CL:1000507,4.98e-13,10;CL:1000494,4.98e-13,10;CL:1000497,5.25e-11,17;CL:0002518,5.25e-11,17;CL:1000449,2.62e-10,15;CL:0000077,3.23e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.75e-11!106;DOID:193!9.95e-10!29;DOID:120!6.75e-09!27;DOID:299!6.72e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.34e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000464!2.13e-09!104;UBERON:0003886!2.90e-09!63;UBERON:0000466!1.53e-08!126;UBERON:0003064!2.54e-08!37;UBERON:0000481!3.74e-08!347;UBERON:0002553!3.77e-08!70;UBERON:0001007!8.71e-08!155;UBERON:0001555!8.71e-08!155;UBERON:0007026!8.71e-08!155;UBERON:0004119!1.02e-07!169;UBERON:0000925!1.02e-07!169;UBERON:0006595!1.02e-07!169;UBERON:0001008!1.11e-07!45;UBERON:0006554!2.44e-07!44;UBERON:0005177!2.57e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.15e-13;10!UBERON:0009773;2.15e-13;10!UBERON:0001231;2.15e-13;10!UBERON:0004810;2.15e-13;10!UBERON:0007625;2.08e-11;11!UBERON:0006555;1.57e-10;15!UBERON:0004819;1.57e-10;15!UBERON:0001285;1.57e-10;15!UBERON:0007684;1.57e-10;15!UBERON:0002113;1.66e-10;24!UBERON:0011143;1.66e-10;24!UBERON:0000489;3.21e-08;29!UBERON:0006554;7.41e-08;30!UBERON:0001008;7.41e-08;30!UBERON:0000019;1.50e-07;19!UBERON:0000047;1.50e-07;19!UBERON:0004088;1.50e-07;19!UBERON:0010230;1.50e-07;19!UBERON:0001264;2.84e-07;10!UBERON:0000970;4.37e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.98e-13,10;UBERON:0007625,1.56e-11,11;UBERON:0004211,2.62e-10,15;UBERON:0009773,2.62e-10,15;UBERON:0001231,2.62e-10,15;UBERON:0001285,2.62e-10,15;UBERON:0007684,2.62e-10,15;UBERON:0004208,2.62e-10,15;UBERON:0005177,3.55e-10,101;UBERON:0006555,1.51e-09,16;UBERON:0004819,1.51e-09,16;UBERON:0002113,2.02e-09,26;UBERON:0003918,2.02e-09,26;UBERON:0011143,2.02e-09,26;UBERON:0005095,2.02e-09,26;UBERON:0007687,2.02e-09,26;UBERON:0001264,1.20e-07,10;UBERON:0000489,1.81e-07,31;UBERON:0000019,3.40e-07,20;UBERON:0000047,3.40e-07,20;UBERON:0010312,3.40e-07,20;UBERON:0004088,3.40e-07,20;UBERON:0010230,3.40e-07,20;UBERON:0003072,3.40e-07,20;UBERON:0004128,3.40e-07,20;UBERON:0003071,3.40e-07,20;UBERON:0000970,9.03e-07,21;UBERON:0002104,9.03e-07,21;UBERON:0000076,9.37e-07,8;UBERON:0006554,9.86e-07,47 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0,0.263766978228454,0.123766352960047,0.994192127183747,0,0,0,0,0.492484232307152,0.816002764977012,0,0,0.136874425072884,0.502170558379211,0.534893840235659,0.0821005894499457,0.393553906568396,0,0,0,0,0.30120591877825,0,0,0.142169232487422,0,0,0,0,0,0,0,0.436194716338694,0,0,0,0,0.619412741790207,0,0,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,1.1384259382189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0,0,0,1.60709189178915,0.665188192387692,1.66886092816939,0.523916301990851,0.728590576585084,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,1.04142150482278,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,1.89853131913626,0.549605231791222,0,0,0.436094052142534,0,0,0.529636723252875,0.573673241497627,0.354668382198357,0,0,0,0,0.269421344139376,0,0.605429710579726,0,0,0.936480230490962,0.570471821544449,0.149448680551801,0.23486899728753,0.323745888736263,0,0,0.491337269247072,0,0,0,0,1.43723628363248,0,0.125118519871964,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0,0.57978255948989,0.272746120590835,0.286804595389004,1.34171076742555,0.662648841607426,0.69716365721711,0.621966330092223,0.504641701751257,0.72995471815166,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,0,0,5.78045661152634,1.02940686179115,0.109750285408626,0,0.301586917234893,0.555530670951178,0,0,1.44331342025273,1.85488647960123,0.117408694235822,0,0,0.190254152234598,1.58040879591855,0.858486162094873,0,0.234004265139238,0,0,0,0.141775097242386,0,0.290633938513962,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0,0.387815147273333,0,0,0.797814349754612,0,0.257207374262142,0,0,0,0,0,0,0,0,1.80863626235752,0.871533458600294,3.09916272664377,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.502548796003046,0.637938751653163,0,0,0,0,0,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0,0.553107505625109,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,4.83437798366489,1.00253235151642,0.184161977871793,0.114814448164607,0.364182336013434,0.131124414959424,2.25599806453706,0.693138033939733,2.35304930753057,1.46139224653261,1.05551628892876,0,0,0.431831832204279,1.54227252690289,1.08378575017541,2.00675909541941,2.54876273045038,0.831076008928724,2.0148727924996,0,0,1.28225062558195,3.28014645699706,0,0.206082023295445,0,0,0,0.650060246036521,0,0.193341436584244,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0.165284915360978,0,0.510450849978337,0.50578890427775,0.464845549297286,0.31481234683064,0.6970372701606,0.924100740528266,0,0,0,0,0,0,0,1.27948895655667,0,0,0.78494864019923,0,0,0,0.606547444719948,0,0,0.48763373908959,0.731140468893853,0,0.136499911407986,0,2.26016233240486,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0.405820753925408,0.30982349809975,0,0.143411352204052,0,0.35667105148125,0,0.211107635297664,0,0.379473173765715,0,0.673554789078584,0,1.08890984861323,0,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54008299268659,0,0,0,0.156679895773023,2.50634477090067,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0.561421621224659,0,0.728163130497081,0,2.84136146806413,0,0,0,0,0,0.333926115068718,0,0.422250816255987,0.398495976502139,0.276283915531148,0.251932747854276,6.03385226762713,0.246169610922139,0.311039587661807,2.06697207638852,1.07412704805365,0,0.0986434056369336,0,0,0,0,0,0,1.31189999994294,0.724999575434793,0.341380344856499,0,0.709163045303809,1.03423011972439,0,0,0,0.120596438625408,0,0,0,0,0,1.11538995422883,0,0.113942055847001,0,0,0,0,0,0,0,0.627921025580099,0,0,0,0,0,0,2.95397290339238,0.489698424477443,1.55488378577335,0,1.99052386215701,8.75729888583058,0.611030144933625,0,0,0,0.067401132980677,0,0,0,2.34797542718508,0,0,8.46935012340647,0.91821828489147,0.063186579628488,0,0.103688191397247,1.99396161812156,1.98595173525299,0.313932918407225,1.19472429772959,1.13843818411917,0,0.520679215005393,0.391969589657511,0.957651272384428,0.17472666824203,0,0,0,0,0.387956065953678,0,0.451961481561065,0,0,0,0.586654148204409,0.0801588202515337,1.06726497369676,0,1.72908500584927,0.916292769327325,0,0,2.36079817574322,0,2.31037150325144,1.04602846312333,0,0,0,0,0,0.429765441419957,0,0,0,0,0.599037001496973,0,0,0,0,0,0.236349546921671,0.164831716762333,0.13480708770837,4.0355267421047,0,0,0,0.803765742325096,1.37539436597234,0.83088067605837,0.899895566206002,0.77380195455795,0.242998226632099,0.3354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| ||
|short_description=p3@SIPA1L3 | |short_description=p3@SIPA1L3 | ||
}} | }} |
Latest revision as of 18:35, 17 September 2015
Short description: | p3@SIPA1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SIPA1L3_5end |
Coexpression cluster: | C298_small_optic_substantia_thalamus_diencephalon_globus_occipital |
Association with transcript: | 30bp_to_ENST00000476317_5end |
EntrezGene: | SIPA1L3 |
HGNC: | 23801 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.81e-14 | 253 |
kidney tubule cell | 4.98e-13 | 10 |
nephron tubule epithelial cell | 4.98e-13 | 10 |
kidney cell | 5.25e-11 | 17 |
kidney epithelial cell | 5.25e-11 | 17 |
epithelial cell of nephron | 2.62e-10 | 15 |
mesothelial cell | 3.23e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 4.98e-13 | 10 |
pigment epithelium of eye | 1.56e-11 | 11 |
nephron epithelium | 2.62e-10 | 15 |
renal tubule | 2.62e-10 | 15 |
nephron tubule | 2.62e-10 | 15 |
nephron | 2.62e-10 | 15 |
uriniferous tubule | 2.62e-10 | 15 |
nephrogenic mesenchyme | 2.62e-10 | 15 |
trunk region element | 3.55e-10 | 101 |
excretory tube | 1.51e-09 | 16 |
kidney epithelium | 1.51e-09 | 16 |
kidney | 2.02e-09 | 26 |
kidney mesenchyme | 2.02e-09 | 26 |
upper urinary tract | 2.02e-09 | 26 |
kidney rudiment | 2.02e-09 | 26 |
kidney field | 2.02e-09 | 26 |
pancreas | 1.20e-07 | 10 |
cavitated compound organ | 1.81e-07 | 31 |
camera-type eye | 3.40e-07 | 20 |
simple eye | 3.40e-07 | 20 |
immature eye | 3.40e-07 | 20 |
ocular region | 3.40e-07 | 20 |
eyeball of camera-type eye | 3.40e-07 | 20 |
optic cup | 3.40e-07 | 20 |
optic vesicle | 3.40e-07 | 20 |
eye primordium | 3.40e-07 | 20 |
eye | 9.03e-07 | 21 |
visual system | 9.03e-07 | 21 |
external ectoderm | 9.37e-07 | 8 |
urinary system structure | 9.86e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.34e-07 | 106 |