FFCP PHASE1:Hg19::chr4:55095975..55095998,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt=D6RIG5 | |UniProt=D6RIG5 | ||
|association_with_transcript=-11bp_to_ENST00000503856_5end | |association_with_transcript=-11bp_to_ENST00000503856_5end | ||
|cluster_id=chr4:55095975..55095998,+ | |||
|coexpression_cluster_id=C720 | |coexpression_cluster_id=C720 | ||
|description=CAGE_peak_9_at_PDGFRA_5end | |description=CAGE_peak_9_at_PDGFRA_5end | ||
|id=chr4:55095975..55095998,+ | |id=chr4:55095975..55095998,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.07e-35!180;CL:0000057!7.49e-25!75;CL:0000187!2.02e-14!54;CL:0000680!5.23e-14!57;CL:0000056!5.23e-14!57;CL:0000355!5.23e-14!57;CL:0000048!1.75e-13!430;CL:0000192!5.14e-13!42;CL:0000514!5.14e-13!42;CL:0000183!7.00e-13!59;CL:0000723!1.05e-12!436;CL:0002620!1.39e-12!23;CL:0000034!4.73e-12!444;CL:0000393!9.63e-12!60;CL:0000211!9.63e-12!60;CL:0002334!2.70e-10!12;CL:0000359!1.48e-09!32;CL:0002371!1.64e-07!591;CL:0000144!5.45e-07!625;CL:0002320!6.74e-07!365;CL:0002494!9.41e-07!16 | |ontology_enrichment_celltype=CL:0000055!1.07e-35!180;CL:0000057!7.49e-25!75;CL:0000187!2.02e-14!54;CL:0000680!5.23e-14!57;CL:0000056!5.23e-14!57;CL:0000355!5.23e-14!57;CL:0000048!1.75e-13!430;CL:0000192!5.14e-13!42;CL:0000514!5.14e-13!42;CL:0000183!7.00e-13!59;CL:0000723!1.05e-12!436;CL:0002620!1.39e-12!23;CL:0000034!4.73e-12!444;CL:0000393!9.63e-12!60;CL:0000211!9.63e-12!60;CL:0002334!2.70e-10!12;CL:0000359!1.48e-09!32;CL:0002371!1.64e-07!591;CL:0000144!5.45e-07!625;CL:0002320!6.74e-07!365;CL:0002494!9.41e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.44e-14;23!CL:0000057;1.14e-09;73!CL:0002334;7.73e-08;12!CL:0002579;2.49e-07;3!CL:0002320;4.72e-07;188!CL:0002615;6.87e-07;3!CL:0002580;6.87e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.14e-24,76;CL:0000048,4.00e-15,427;CL:0002620,1.12e-14,23;CL:0000723,1.30e-14,433;CL:0000034,5.94e-14,441;CL:0002320,2.62e-11,361;CL:0000134,2.15e-09,354;CL:0002334,7.04e-08,12;CL:0000136,1.53e-07,15;CL:0002579,2.47e-07,3;CL:0000219,3.63e-07,386;CL:0002580,7.17e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.12e-08!14 | |ontology_enrichment_disease=DOID:2394!7.12e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:17;2.01e-10;5!DOID:450;2.01e-10;5!DOID:66;2.01e-10;5!DOID:423;2.01e-10;5!DOID:0080000;2.01e-10;5!DOID:11722;2.01e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.29e-11,5;DOID:450,9.29e-11,5;DOID:66,9.29e-11,5;DOID:423,9.29e-11,5;DOID:0080000,9.29e-11,5;DOID:11722,9.29e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.03e-13!83;UBERON:0002329!1.03e-13!83;UBERON:0003077!1.03e-13!83;UBERON:0003059!1.03e-13!83;UBERON:0007282!1.03e-13!83;UBERON:0009618!1.03e-13!83;UBERON:0007285!1.03e-13!83;UBERON:0001134!2.93e-12!61;UBERON:0002036!2.93e-12!61;UBERON:0003082!2.93e-12!61;UBERON:0002385!4.11e-12!63;UBERON:0001015!4.11e-12!63;UBERON:0000383!4.11e-12!63;UBERON:0004290!3.16e-11!70;UBERON:0003102!4.68e-11!95;UBERON:0004573!1.37e-09!33;UBERON:0004571!1.37e-09!33;UBERON:0000486!3.78e-09!82;UBERON:0000475!4.76e-08!365;UBERON:0005256!1.70e-07!143;UBERON:0004872!2.05e-07!84;UBERON:0002199!2.17e-07!45;UBERON:0002416!2.17e-07!45;UBERON:0003688!3.85e-07!6;UBERON:0002358!3.85e-07!6;UBERON:0003684!3.85e-07!6;UBERON:0001178!3.85e-07!6;UBERON:0002384!5.22e-07!375;UBERON:0002097!6.21e-07!40;UBERON:0001637!7.72e-07!42;UBERON:0003509!7.72e-07!42;UBERON:0004572!7.72e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!1.03e-13!83;UBERON:0002329!1.03e-13!83;UBERON:0003077!1.03e-13!83;UBERON:0003059!1.03e-13!83;UBERON:0007282!1.03e-13!83;UBERON:0009618!1.03e-13!83;UBERON:0007285!1.03e-13!83;UBERON:0001134!2.93e-12!61;UBERON:0002036!2.93e-12!61;UBERON:0003082!2.93e-12!61;UBERON:0002385!4.11e-12!63;UBERON:0001015!4.11e-12!63;UBERON:0000383!4.11e-12!63;UBERON:0004290!3.16e-11!70;UBERON:0003102!4.68e-11!95;UBERON:0004573!1.37e-09!33;UBERON:0004571!1.37e-09!33;UBERON:0000486!3.78e-09!82;UBERON:0000475!4.76e-08!365;UBERON:0005256!1.70e-07!143;UBERON:0004872!2.05e-07!84;UBERON:0002199!2.17e-07!45;UBERON:0002416!2.17e-07!45;UBERON:0003688!3.85e-07!6;UBERON:0002358!3.85e-07!6;UBERON:0003684!3.85e-07!6;UBERON:0001178!3.85e-07!6;UBERON:0002384!5.22e-07!375;UBERON:0002097!6.21e-07!40;UBERON:0001637!7.72e-07!42;UBERON:0003509!7.72e-07!42;UBERON:0004572!7.72e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.45e-12;6!UBERON:0002358;1.45e-12;6!UBERON:0003684;1.45e-12;6!UBERON:0001178;1.45e-12;6!UBERON:0004457;1.30e-10;9!UBERON:0000042;1.30e-10;9!UBERON:0002384;1.57e-07;198!UBERON:0011135;4.65e-07;5!UBERON:0002216;4.65e-07;5!UBERON:0011134;4.65e-07;5!UBERON:0002209;4.65e-07;5!UBERON:0002213;4.65e-07;5!UBERON:0007844;4.65e-07;5!UBERON:0011138;4.65e-07;5!UBERON:0001130;4.65e-07;5!UBERON:0001066;4.65e-07;5!UBERON:0001468;4.65e-07;5!UBERON:0000075;9.57e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.34e-12,6;UBERON:0002358,2.34e-12,6;UBERON:0003684,2.34e-12,6;UBERON:0001178,2.34e-12,6;UBERON:0002384,8.31e-12,371;UBERON:0002097,4.99e-09,41;UBERON:0003102,2.71e-08,99;UBERON:0002199,1.31e-07,46;UBERON:0002416,1.31e-07,46;UBERON:0004457,1.84e-07,12;UBERON:0000042,1.84e-07,12;UBERON:0011135,2.94e-07,5;UBERON:0002216,2.94e-07,5;UBERON:0011134,2.94e-07,5;UBERON:0002209,2.94e-07,5;UBERON:0002213,2.94e-07,5;UBERON:0005856,2.94e-07,5;UBERON:0005866,2.94e-07,5;UBERON:0005863,2.94e-07,5;UBERON:0007844,2.94e-07,5;UBERON:0011138,2.94e-07,5;UBERON:0001130,2.94e-07,5;UBERON:0001066,2.94e-07,5;UBERON:0001468,2.94e-07,5 | |||
|phase1_expression=2.18014055124668,2.14100523890983,3.10099689011137,2.00146596706261,1.34088328328186,3.48935409640147,0,0.631719873426831,0,0,0,0,0,2.47532705920093,3.31397375727916,0,0,1.46062018077475,0,0,0,0,0.286235987131057,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.42938867502708,0,3.00802746381534,1.59331170856906,0.795285947051099,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,2.15271869829786,6.22323149822128,10.8997915884549,0.354668382198357,0,1.06748995729705,0,1.55605517699883,0.404132016209064,0.163461903113459,0.756787138224657,0,0,0.624320153660641,0,0.747243402759005,0,0,0.280901613404497,1.22492502752936,0.368502951935304,0.826606249406124,4.75201142912821,2.71993622206413,0,0,0.168336113954066,0,1.10825646193673,1.31693286264251,0.919463387397059,1.35214253015937,1.13432183160021,3.7671823494661,1.70845911054854,1.69545520927649,5.40163972951924,2.57631323096097,2.57640540045629,1.67505170698431,5.40084263172052,4.38466523225394,1.51460264546469,3.68199594569197,1.61646056818812,3.19508633264953,1.5112814734146,0.847802961552438,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,1.16344544182,0,0,1.86156681609409,0,0,0,0,2.28764789853036,1.08524321078289,0,0,2.84313558994037,0,1.20575750823834,1.74306691720059,0.799783929456456,0,0,0,1.91699884393266,0,0,1.01346914667305,0,0,0,0,0,0,1.52456774533478,0,0,0,0,0,0,0,3.55805325985506,0.500170521059677,1.89885516589815,1.45579603071565,1.60586089917446,1.41932173530541,1.52283839490527,2.10662269809403,0,1.03473071292505,1.32845119707087,0.737476674166813,0.955719759148911,0.195801157462741,0,0,0,0,0,0,0,2.23297027036899,3.83654933220156,1.40330047216537,2.69092213436972,4.60536524160033,2.0911009748669,2.96836132889982,0.308419387605311,0.710246901252508,0.657017248110473,0.519254429183621,0.464841513839837,0.120859449591622,0,0,1.60740227430449,0.910455840033585,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640986253728404,0.577566499444116,0,0,6.42735719376638,0.193341436584244,0,0.307007349452259,0.137836572484531,0.214840489736547,0.290033387828457,0,1.06838442776085,0,0,0,0,0,11.9628691795643,1.3940745403212,0.616067160352178,1.06461206063404,0.869932992075073,1.11194531462352,0.858749320451947,1.116475108079,0.949138274156178,1.33441135746677,0,0,1.90921948755562,0.78494864019923,1.43897966066652,0.54907405947211,0.942499218765491,0.404364963146632,3.17020642346017,0.421258456238981,0.48763373908959,0.243713489631284,3.16950440270266,1.9109987597118,2.2624869112594,0,1.65409603063837,0.66343897524122,0.438450885253763,0,1.31178950409327,0,0,0,0.430234056612155,0.785992328104969,0,0.354761064070598,1.26664581178598,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.796991953004279,0.276283915531148,0,0,0,2.48831670129446,0,0,0,0.0986434056369336,0,5.55684950723184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,1.59518878185802,0,0,0,0,1.74035427463538,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0.203996435272644,0.288950589901519,0.600420288709789,0.136905378891993,0,0.429765441419957,0,0.558564802544508,0,0,0,0.429226048136571,0,0,1.80149941771202,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0,0.714695326373367,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,1.04478362020812,1.63599316893057,0.554805861502613,1.89403005275089,2.0125432140206,4.44905610798268,0.228840068396924,1.96600200892211,0.621748802331122,1.18284119991707,0.63718706865481,0.449803112163605,0.310525913752519,0.414706207840855,1.86089200190596,0.521745061811734,1.50257608997218,0.761610424337591,0.813741466409323,0.727394636810238,0.322231671127465,0.928067519756987,1.59238355479446,0,1.71697852591396,2.02049693259551,0,0,0,0,0,0.231522474323834,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,2.82140754952547,4.593682160298,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.762764190934334,0,0.795664888465099,0.676892955143315,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.0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| ||
|short_description=p9@PDGFRA | |short_description=p9@PDGFRA | ||
}} | }} |
Latest revision as of 00:48, 18 September 2015
Short description: | p9@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PDGFRA_5end |
Coexpression cluster: | C720_Smooth_Fibroblast_Preadipocyte_Sertoli_Ewing_hepatic_Synoviocyte |
Association with transcript: | -11bp_to_ENST00000503856_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RIG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.14e-24 | 76 |
multi fate stem cell | 4.00e-15 | 427 |
skin fibroblast | 1.12e-14 | 23 |
somatic stem cell | 1.30e-14 | 433 |
stem cell | 5.94e-14 | 441 |
connective tissue cell | 2.62e-11 | 361 |
mesenchymal cell | 2.15e-09 | 354 |
preadipocyte | 7.04e-08 | 12 |
fat cell | 1.53e-07 | 15 |
omentum preadipocyte | 2.47e-07 | 3 |
motile cell | 3.63e-07 | 386 |
preadipocyte of the breast | 7.17e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.34e-12 | 6 |
peritoneum | 2.34e-12 | 6 |
abdominal cavity | 2.34e-12 | 6 |
visceral peritoneum | 2.34e-12 | 6 |
connective tissue | 8.31e-12 | 371 |
skin of body | 4.99e-09 | 41 |
surface structure | 2.71e-08 | 99 |
integument | 1.31e-07 | 46 |
integumental system | 1.31e-07 | 46 |
cavity lining | 1.84e-07 | 12 |
serous membrane | 1.84e-07 | 12 |
intervertebral cartilage | 2.94e-07 | 5 |
symphysis | 2.94e-07 | 5 |
nonsynovial joint | 2.94e-07 | 5 |
fibrous joint | 2.94e-07 | 5 |
cartilaginous joint | 2.94e-07 | 5 |
developing mesenchymal condensation | 2.94e-07 | 5 |
pre-cartilage condensation | 2.94e-07 | 5 |
cartilaginous condensation | 2.94e-07 | 5 |
cartilage element | 2.94e-07 | 5 |
post-cranial axial skeletal system | 2.94e-07 | 5 |
vertebral column | 2.94e-07 | 5 |
intervertebral disk | 2.94e-07 | 5 |
intervertebral joint | 2.94e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.29e-11 | 5 |
myotonic disease | 9.29e-11 | 5 |
muscle tissue disease | 9.29e-11 | 5 |
myopathy | 9.29e-11 | 5 |
muscular disease | 9.29e-11 | 5 |
myotonic dystrophy | 9.29e-11 | 5 |