FFCP PHASE1:Hg19::chr7:27142290..27142310,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3199 | |EntrezGene=3199 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5103 | |HGNC=5103 | ||
|TSSclassifier=strong | |||
|UniProt=O43364 | |UniProt=O43364 | ||
|association_with_transcript=83bp_to_NM_006735,uc003syh.2_5end | |association_with_transcript=83bp_to_NM_006735,uc003syh.2_5end | ||
|cluster_id=chr7:27142290..27142310,- | |||
|description=CAGE_peak_1_at_HOXA2_5end | |description=CAGE_peak_1_at_HOXA2_5end | ||
|id=chr7:27142290..27142310,- | |id=chr7:27142290..27142310,- |
Latest revision as of 00:54, 18 September 2015
Short description: | p1@HOXA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 83bp_to_NM_006735, uc003syh.2_5end |
EntrezGene: | HOXA2 |
HGNC: | 5103 |
UniProt: | O43364 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@HOXA2 |
---|
0
5
10
15
20
25
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.60e-12 | 121 |
blood vessel endothelial cell | 4.25e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.25e-08 | 18 |
lining cell | 4.40e-08 | 58 |
barrier cell | 4.40e-08 | 58 |
smooth muscle cell | 1.18e-07 | 43 |
smooth muscle myoblast | 1.18e-07 | 43 |
squamous epithelial cell | 1.63e-07 | 63 |
endothelial cell of vascular tree | 3.65e-07 | 24 |
aortic smooth muscle cell | 4.21e-07 | 10 |
Showing 1 to 10 of 11 entries
Ontology term | p-value | n |
---|---|---|
vessel | 5.85e-14 | 68 |
epithelial tube open at both ends | 2.00e-13 | 59 |
blood vessel | 2.00e-13 | 59 |
blood vasculature | 2.00e-13 | 59 |
vascular cord | 2.00e-13 | 59 |
artery | 5.32e-12 | 42 |
arterial blood vessel | 5.32e-12 | 42 |
arterial system | 5.32e-12 | 42 |
splanchnic layer of lateral plate mesoderm | 5.33e-12 | 83 |
aorta | 5.35e-12 | 21 |
Showing 1 to 10 of 50 entries