FFCP PHASE1:Hg19::chr13:78109875..78109882,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8796 | |EntrezGene=8796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10573 | |HGNC=10573 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000377246_5end | |association_with_transcript=-11bp_to_ENST00000377246_5end | ||
|cluster_id=chr13:78109875..78109882,+ | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_4_at_SCEL_5end | |description=CAGE_peak_4_at_SCEL_5end | ||
|id=chr13:78109875..78109882,+ | |id=chr13:78109875..78109882,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.17e-23!43;CL:0000066!2.46e-23!254;CL:0000223!2.12e-16!59;CL:0002251!3.10e-12!21;CL:0002541!9.10e-07!3 | |ontology_enrichment_celltype=CL:0002076!2.17e-23!43;CL:0000066!2.46e-23!254;CL:0000223!2.12e-16!59;CL:0002251!3.10e-12!21;CL:0002541!9.10e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.29e-12;19!CL:0002536;8.83e-09;2!CL:0002537;3.94e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.29e-12,19;CL:0000066,3.99e-10,253;CL:0002536,1.47e-08,2;CL:0002537,3.22e-08,5;CL:0002076,1.93e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;2.14e-09;2!UBERON:0010056;2.14e-09;2 | |||
|ontology_enrichment_disease=DOID:305!2.66e-16!106;DOID:1749!8.92e-15!14;DOID:0050687!5.75e-11!143;DOID:299!1.54e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:4468;1.17e-09;2!DOID:1749;1.36e-09;14!DOID:299;4.37e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.15e-11,106;DOID:4468,1.25e-09,2;DOID:1749,1.26e-09,14;DOID:0050687,2.73e-08,143;DOID:299,3.88e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.66e-16!14;UBERON:0000158!9.66e-16!14;UBERON:0001004!1.14e-13!72;UBERON:0004119!2.20e-13!169;UBERON:0000925!2.20e-13!169;UBERON:0006595!2.20e-13!169;UBERON:0000344!2.60e-12!12;UBERON:0000161!3.49e-12!35;UBERON:0000166!3.82e-11!21;UBERON:0005795!2.49e-10!22;UBERON:0000065!6.94e-10!53;UBERON:0003729!9.66e-10!5;UBERON:0000077!1.00e-09!130;UBERON:0003124!1.31e-09!7;UBERON:0001007!3.29e-09!155;UBERON:0001555!3.29e-09!155;UBERON:0007026!3.29e-09!155;UBERON:0000165!4.39e-09!28;UBERON:0000930!4.39e-09!28;UBERON:0004923!5.19e-09!57;UBERON:0000995!5.47e-09!21;UBERON:0001444!9.38e-09!48;UBERON:0000974!1.45e-08!10;UBERON:0003975!1.82e-08!22;UBERON:0000488!2.36e-08!4;UBERON:0003343!4.29e-08!4;UBERON:0004785!4.29e-08!4;UBERON:0000478!4.63e-08!24;UBERON:0000305!8.18e-08!7;UBERON:0001723!1.29e-07!3;UBERON:0001033!1.29e-07!3;UBERON:0010056!1.29e-07!3;UBERON:0002294!1.81e-07!7;UBERON:0001173!1.81e-07!7;UBERON:0004912!1.81e-07!7;UBERON:0000064!2.78e-07!219;UBERON:0004175!3.69e-07!25;UBERON:0004921!6.49e-07!129;UBERON:0004185!6.49e-07!129;UBERON:0000476!9.10e-07!3;UBERON:0000920!9.10e-07!3;UBERON:0004871!9.20e-07!8 | |ontology_enrichment_uberon=UBERON:0005631!9.66e-16!14;UBERON:0000158!9.66e-16!14;UBERON:0001004!1.14e-13!72;UBERON:0004119!2.20e-13!169;UBERON:0000925!2.20e-13!169;UBERON:0006595!2.20e-13!169;UBERON:0000344!2.60e-12!12;UBERON:0000161!3.49e-12!35;UBERON:0000166!3.82e-11!21;UBERON:0005795!2.49e-10!22;UBERON:0000065!6.94e-10!53;UBERON:0003729!9.66e-10!5;UBERON:0000077!1.00e-09!130;UBERON:0003124!1.31e-09!7;UBERON:0001007!3.29e-09!155;UBERON:0001555!3.29e-09!155;UBERON:0007026!3.29e-09!155;UBERON:0000165!4.39e-09!28;UBERON:0000930!4.39e-09!28;UBERON:0004923!5.19e-09!57;UBERON:0000995!5.47e-09!21;UBERON:0001444!9.38e-09!48;UBERON:0000974!1.45e-08!10;UBERON:0003975!1.82e-08!22;UBERON:0000488!2.36e-08!4;UBERON:0003343!4.29e-08!4;UBERON:0004785!4.29e-08!4;UBERON:0000478!4.63e-08!24;UBERON:0000305!8.18e-08!7;UBERON:0001723!1.29e-07!3;UBERON:0001033!1.29e-07!3;UBERON:0010056!1.29e-07!3;UBERON:0002294!1.81e-07!7;UBERON:0001173!1.81e-07!7;UBERON:0004912!1.81e-07!7;UBERON:0000064!2.78e-07!219;UBERON:0004175!3.69e-07!25;UBERON:0004921!6.49e-07!129;UBERON:0004185!6.49e-07!129;UBERON:0000476!9.10e-07!3;UBERON:0000920!9.10e-07!3;UBERON:0004871!9.20e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.52e-19;10!UBERON:0000158;3.52e-19;10!UBERON:0000305;1.94e-14;7!UBERON:0001723;2.58e-13;3!UBERON:0001033;2.58e-13;3!UBERON:0000478;1.63e-09;24!UBERON:0002394;2.97e-09;4!UBERON:0003928;2.97e-09;4!UBERON:0002294;3.44e-09;7!UBERON:0001173;3.44e-09;7!UBERON:0000344;8.82e-07;20!UBERON:0000974;9.21e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.93e-17,14;UBERON:0000158,2.93e-17,14;UBERON:0000305,2.21e-14,7;UBERON:0001723,2.54e-13,3;UBERON:0001033,2.54e-13,3;UBERON:0010056,2.54e-13,3;UBERON:0004871,1.51e-12,8;UBERON:0000478,1.63e-09,24;UBERON:0004923,7.95e-09,66;UBERON:0000065,4.28e-08,54;UBERON:0005795,6.83e-08,22;UBERON:0004119,1.39e-07,160;UBERON:0000925,1.39e-07,160;UBERON:0006595,1.39e-07,160;UBERON:0000161,1.53e-07,36;UBERON:0001004,2.28e-07,74;UBERON:0002294,2.70e-07,9;UBERON:0001173,2.70e-07,9;UBERON:0004912,2.70e-07,9;UBERON:0001042,7.28e-07,10;UBERON:0009145,7.28e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,1.09220686065086,2.11013582582763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.443458794925128,1.22968699970376,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.57839051492628,0.658501712451753,0,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,1.13420077793909,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,2.85451065701279,0,0,0,0,0.693138033939733,0,0,0.527758144464379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4875642382488,1.15314040419064,0.765676274967505,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.659006605437454,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0995587790152,1.78178808499583,14.1293922965647,0,0,0,0,0,0,0,0,0,0,0,2.87578723671446,1.61119057208048,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.568967241427498,5.84783395673362,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,2.5393585306253,0,0,0,0,3.50901275705111,0.0915975934018623,2.66517388009317,0,0,0,0,0,0,0,0,10.3389051618733,4.24405301213784,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,1.10939738410511,4.5125531967134,2.74378712760257,0.0870592065804026,0,0,0,0,0,13.190506242425,0,1.12990370390266,0,0,0,3.51992488922645,0.480952921509202,0,0,0,0,0,3.88947954568004,0,1.17847017308398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0.0788057072991982,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,2.11444506695002,2.45611048905698,0,2.07119527673598,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6488667138898,0,0,0,0,0,1.53867458491389,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.353909170043221,2.01771458373847,2.31051332300676,0,0,0,0,0,0,0,0,1.6264169483875,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0.0887023701626388,0,0,0,0,1.53651993149159,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.51215543128185,0.691259661814092,0,0,0.0852134047591577,0,1.8328549483524,0,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,1.44434460040503,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.203977659483963,0,0.0918948995348449,0,0,0,0,0,12.1543369683559,0.23806443146374,0,0.0620747142958579,0,0,0,8.92638666377542,4.79126621519393,3.30025059771479,1.14755528628282,0.332660356546013,5.86103533999016,0,0,0,0,0.366724332548599,2.84827324821017,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,1.09220686065086,2.11013582582763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.443458794925128,1.22968699970376,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.57839051492628,0.658501712451753,0,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,1.13420077793909,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,2.85451065701279,0,0,0,0,0.693138033939733,0,0,0.527758144464379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4875642382488,1.15314040419064,0.765676274967505,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.659006605437454,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0995587790152,1.78178808499583,14.1293922965647,0,0,0,0,0,0,0,0,0,0,0,2.87578723671446,1.61119057208048,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.568967241427498,5.84783395673362,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,2.5393585306253,0,0,0,0,3.50901275705111,0.0915975934018623,2.66517388009317,0,0,0,0,0,0,0,0,10.3389051618733,4.24405301213784,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,1.10939738410511,4.5125531967134,2.74378712760257,0.0870592065804026,0,0,0,0,0,13.190506242425,0,1.12990370390266,0,0,0,3.51992488922645,0.480952921509202,0,0,0,0,0,3.88947954568004,0,1.17847017308398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0.0788057072991982,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,2.11444506695002,2.45611048905698,0,2.07119527673598,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6488667138898,0,0,0,0,0,1.53867458491389,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.353909170043221,2.01771458373847,2.31051332300676,0,0,0,0,0,0,0,0,1.6264169483875,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0.0887023701626388,0,0,0,0,1.53651993149159,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.51215543128185,0.691259661814092,0,0,0.0852134047591577,0,1.8328549483524,0,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,1.44434460040503,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.203977659483963,0,0.0918948995348449,0,0,0,0,0,12.1543369683559,0.23806443146374,0,0.0620747142958579,0,0,0,8.92638666377542,4.79126621519393,3.30025059771479,1.14755528628282,0.332660356546013,5.86103533999016,0,0,0,0,0.366724332548599,2.84827324821017,0,0,0 | ||
|short_description=p4@SCEL | |short_description=p4@SCEL | ||
}} | }} |
Latest revision as of 01:31, 18 September 2015
Short description: | p4@SCEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCEL_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | -11bp_to_ENST00000377246_5end |
EntrezGene: | SCEL |
HGNC: | 10573 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.29e-12 | 19 |
epithelial cell | 3.99e-10 | 253 |
amniotic epithelial cell | 1.47e-08 | 2 |
amnion mesenchymal stem cell | 3.22e-08 | 5 |
endo-epithelial cell | 1.93e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.93e-17 | 14 |
membranous layer | 2.93e-17 | 14 |
amnion | 2.21e-14 | 7 |
tongue | 2.54e-13 | 3 |
gustatory system | 2.54e-13 | 3 |
future tongue | 2.54e-13 | 3 |
somatic layer of lateral plate mesoderm | 1.51e-12 | 8 |
extraembryonic structure | 1.63e-09 | 24 |
organ component layer | 7.95e-09 | 66 |
respiratory tract | 4.28e-08 | 54 |
embryonic uterus | 6.83e-08 | 22 |
endoderm-derived structure | 1.39e-07 | 160 |
endoderm | 1.39e-07 | 160 |
presumptive endoderm | 1.39e-07 | 160 |
orifice | 1.53e-07 | 36 |
respiratory system | 2.28e-07 | 74 |
biliary system | 2.70e-07 | 9 |
biliary tree | 2.70e-07 | 9 |
biliary bud | 2.70e-07 | 9 |
chordate pharynx | 7.28e-07 | 10 |
pharyngeal region of foregut | 7.28e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.15e-11 | 106 |
clear cell adenocarcinoma | 1.25e-09 | 2 |
squamous cell carcinoma | 1.26e-09 | 14 |
cell type cancer | 2.73e-08 | 143 |
adenocarcinoma | 3.88e-07 | 25 |