FFCP PHASE1:Hg19::chr13:78109875..78109882,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8796 | |EntrezGene=8796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10573 | |HGNC=10573 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000377246_5end | |association_with_transcript=-11bp_to_ENST00000377246_5end | ||
|cluster_id=chr13:78109875..78109882,+ | |||
|coexpression_cluster_id=C629 | |coexpression_cluster_id=C629 | ||
|description=CAGE_peak_4_at_SCEL_5end | |description=CAGE_peak_4_at_SCEL_5end | ||
|id=chr13:78109875..78109882,+ | |id=chr13:78109875..78109882,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.17e-23!43;CL:0000066!2.46e-23!254;CL:0000223!2.12e-16!59;CL:0002251!3.10e-12!21;CL:0002541!9.10e-07!3 | |ontology_enrichment_celltype=CL:0002076!2.17e-23!43;CL:0000066!2.46e-23!254;CL:0000223!2.12e-16!59;CL:0002251!3.10e-12!21;CL:0002541!9.10e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.29e-12;19!CL:0002536;8.83e-09;2!CL:0002537;3.94e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.29e-12,19;CL:0000066,3.99e-10,253;CL:0002536,1.47e-08,2;CL:0002537,3.22e-08,5;CL:0002076,1.93e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;2.14e-09;2!UBERON:0010056;2.14e-09;2 | |||
|ontology_enrichment_disease=DOID:305!2.66e-16!106;DOID:1749!8.92e-15!14;DOID:0050687!5.75e-11!143;DOID:299!1.54e-07!25 | |ontology_enrichment_disease=DOID:305!2.66e-16!106;DOID:1749!8.92e-15!14;DOID:0050687!5.75e-11!143;DOID:299!1.54e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:4468;1.17e-09;2!DOID:1749;1.36e-09;14!DOID:299;4.37e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.15e-11,106;DOID:4468,1.25e-09,2;DOID:1749,1.26e-09,14;DOID:0050687,2.73e-08,143;DOID:299,3.88e-07,25 | |||
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|ontology_enrichment_uberon_v019=UBERON:0005631;3.52e-19;10!UBERON:0000158;3.52e-19;10!UBERON:0000305;1.94e-14;7!UBERON:0001723;2.58e-13;3!UBERON:0001033;2.58e-13;3!UBERON:0000478;1.63e-09;24!UBERON:0002394;2.97e-09;4!UBERON:0003928;2.97e-09;4!UBERON:0002294;3.44e-09;7!UBERON:0001173;3.44e-09;7!UBERON:0000344;8.82e-07;20!UBERON:0000974;9.21e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.93e-17,14;UBERON:0000158,2.93e-17,14;UBERON:0000305,2.21e-14,7;UBERON:0001723,2.54e-13,3;UBERON:0001033,2.54e-13,3;UBERON:0010056,2.54e-13,3;UBERON:0004871,1.51e-12,8;UBERON:0000478,1.63e-09,24;UBERON:0004923,7.95e-09,66;UBERON:0000065,4.28e-08,54;UBERON:0005795,6.83e-08,22;UBERON:0004119,1.39e-07,160;UBERON:0000925,1.39e-07,160;UBERON:0006595,1.39e-07,160;UBERON:0000161,1.53e-07,36;UBERON:0001004,2.28e-07,74;UBERON:0002294,2.70e-07,9;UBERON:0001173,2.70e-07,9;UBERON:0004912,2.70e-07,9;UBERON:0001042,7.28e-07,10;UBERON:0009145,7.28e-07,10 | |||
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| ||
|short_description=p4@SCEL | |short_description=p4@SCEL | ||
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Latest revision as of 01:31, 18 September 2015
Short description: | p4@SCEL |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCEL_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | -11bp_to_ENST00000377246_5end |
EntrezGene: | SCEL |
HGNC: | 10573 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.29e-12 | 19 |
epithelial cell | 3.99e-10 | 253 |
amniotic epithelial cell | 1.47e-08 | 2 |
amnion mesenchymal stem cell | 3.22e-08 | 5 |
endo-epithelial cell | 1.93e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.93e-17 | 14 |
membranous layer | 2.93e-17 | 14 |
amnion | 2.21e-14 | 7 |
tongue | 2.54e-13 | 3 |
gustatory system | 2.54e-13 | 3 |
future tongue | 2.54e-13 | 3 |
somatic layer of lateral plate mesoderm | 1.51e-12 | 8 |
extraembryonic structure | 1.63e-09 | 24 |
organ component layer | 7.95e-09 | 66 |
respiratory tract | 4.28e-08 | 54 |
embryonic uterus | 6.83e-08 | 22 |
endoderm-derived structure | 1.39e-07 | 160 |
endoderm | 1.39e-07 | 160 |
presumptive endoderm | 1.39e-07 | 160 |
orifice | 1.53e-07 | 36 |
respiratory system | 2.28e-07 | 74 |
biliary system | 2.70e-07 | 9 |
biliary tree | 2.70e-07 | 9 |
biliary bud | 2.70e-07 | 9 |
chordate pharynx | 7.28e-07 | 10 |
pharyngeal region of foregut | 7.28e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.15e-11 | 106 |
clear cell adenocarcinoma | 1.25e-09 | 2 |
squamous cell carcinoma | 1.26e-09 | 14 |
cell type cancer | 2.73e-08 | 143 |
adenocarcinoma | 3.88e-07 | 25 |