FFCP PHASE1:Hg19::chr15:56657750..56657757,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=374618 | |EntrezGene=374618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29585 | |HGNC=29585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000558083_5end | |association_with_transcript=-19bp_to_ENST00000558083_5end | ||
|cluster_id=chr15:56657750..56657757,+ | |||
|coexpression_cluster_id=C78 | |coexpression_cluster_id=C78 | ||
|description=CAGE_peak_6_at_TEX9_5end | |description=CAGE_peak_6_at_TEX9_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000945!1.05e-20!24;CL:0000826!1.05e-20!24;CL:0000838!3.05e-08!52;CL:0000542!5.26e-08!53;CL:0000051!5.26e-08!53;CL:0000236!1.82e-07!14 | |ontology_enrichment_celltype=CL:0000945!1.05e-20!24;CL:0000826!1.05e-20!24;CL:0000838!3.05e-08!52;CL:0000542!5.26e-08!53;CL:0000051!5.26e-08!53;CL:0000236!1.82e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000945;7.77e-55;24!CL:0000946;4.08e-18;1!CL:0000786;4.08e-18;1!CL:0000542;4.48e-15;53!CL:0000236;5.25e-12;13 | |ontology_enrichment_celltype_v019=CL:0000945;7.77e-55;24!CL:0000946;4.08e-18;1!CL:0000786;4.08e-18;1!CL:0000542;4.48e-15;53!CL:0000236;5.25e-12;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.55e-55,24;CL:0000826,7.55e-55,24;CL:0000838,4.62e-25,52;CL:0000542,1.41e-24,53;CL:0000051,1.41e-24,53;CL:0000236,4.09e-19,14;CL:0000946,4.44e-18,1;CL:0000786,4.44e-18,1;CL:0000980,4.44e-18,1;CL:0002087,7.14e-11,115;CL:0002031,2.16e-10,120;CL:0000785,1.03e-09,2;CL:0000955,1.03e-09,2;CL:0000818,1.03e-09,2;CL:0000954,1.03e-09,2;CL:0000816,1.03e-09,2;CL:0000738,4.34e-09,136;CL:0002032,1.46e-07,161;CL:0000837,1.46e-07,161;CL:0000037,3.26e-07,168;CL:0000817,6.88e-07,3;CL:0000988,8.32e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;4.48e-15;53!UBERON:0004872;2.35e-10;7!CL:0000954;9.87e-10;2 | |ontology_enrichment_development_v019=CL:0000051;4.48e-15;53!UBERON:0004872;2.35e-10;7!CL:0000954;9.87e-10;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060058;9.78e-27;10!DOID:630;3.16e-18;1!DOID:0050177;3.16e-18;1!DOID:0050427;3.16e-18;1 | |ontology_enrichment_disease_v019=DOID:0060058;9.78e-27;10!DOID:630;3.16e-18;1!DOID:0050177;3.16e-18;1!DOID:0050427;3.16e-18;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.94e-27,10;DOID:630,3.16e-18,1;DOID:0050177,3.16e-18,1;DOID:0050427,3.16e-18,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.03e-23;3!UBERON:0004177;4.11e-14;5!UBERON:0005057;4.11e-14;5 | |ontology_enrichment_uberon_v019=UBERON:0002106;8.03e-23;3!UBERON:0004177;4.11e-14;5!UBERON:0005057;4.11e-14;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.99e-23,3;UBERON:0004854,8.99e-23,3;UBERON:0009034,8.99e-23,3;UBERON:0002095,8.99e-23,3;UBERON:0004782,8.99e-23,3;UBERON:0003281,8.99e-23,3;UBERON:0009664,8.99e-23,3;UBERON:0002296,8.99e-23,3;UBERON:0005602,8.99e-23,3;UBERON:0001179,8.99e-23,3;UBERON:0006293,8.99e-23,3;UBERON:0004177,2.46e-10,7;UBERON:0005057,2.46e-10,7;UBERON:0000945,3.70e-09,8;UBERON:0010039,3.70e-09,8 | |||
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| ||
|short_description=p6@TEX9 | |short_description=p6@TEX9 | ||
}} | }} |
Latest revision as of 05:28, 18 September 2015
Short description: | p6@TEX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TEX9_5end |
Coexpression cluster: | C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea |
Association with transcript: | -19bp_to_ENST00000558083_5end |
EntrezGene: | TEX9 |
HGNC: | 29585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.55e-55 | 24 |
pro-B cell | 7.55e-55 | 24 |
lymphoid lineage restricted progenitor cell | 4.62e-25 | 52 |
lymphocyte | 1.41e-24 | 53 |
common lymphoid progenitor | 1.41e-24 | 53 |
B cell | 4.09e-19 | 14 |
antibody secreting cell | 4.44e-18 | 1 |
plasma cell | 4.44e-18 | 1 |
plasmablast | 4.44e-18 | 1 |
nongranular leukocyte | 7.14e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 2.16e-10 | 120 |
mature B cell | 1.03e-09 | 2 |
pre-B-II cell | 1.03e-09 | 2 |
transitional stage B cell | 1.03e-09 | 2 |
small pre-B-II cell | 1.03e-09 | 2 |
immature B cell | 1.03e-09 | 2 |
leukocyte | 4.34e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.46e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-07 | 161 |
hematopoietic stem cell | 3.26e-07 | 168 |
precursor B cell | 6.88e-07 | 3 |
hematopoietic cell | 8.32e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.99e-23 | 3 |
gastrointestinal system mesentery | 8.99e-23 | 3 |
stomach region | 8.99e-23 | 3 |
mesentery | 8.99e-23 | 3 |
gastrointestinal system serosa | 8.99e-23 | 3 |
mesentery of stomach | 8.99e-23 | 3 |
gut mesentery | 8.99e-23 | 3 |
dorsal mesentery | 8.99e-23 | 3 |
dorsal mesogastrium | 8.99e-23 | 3 |
peritoneal cavity | 8.99e-23 | 3 |
spleen primordium | 8.99e-23 | 3 |
hemopoietic organ | 2.46e-10 | 7 |
immune organ | 2.46e-10 | 7 |
stomach | 3.70e-09 | 8 |
food storage organ | 3.70e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.94e-27 | 10 |
genetic disease | 3.16e-18 | 1 |
monogenic disease | 3.16e-18 | 1 |
xeroderma pigmentosum | 3.16e-18 | 1 |