FFCP PHASE1:Hg19::chr12:46662453..46662472,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |EntrezGene=81539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |HGNC=13447 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=116bp_to_ENST00000551506_5end | |association_with_transcript=116bp_to_ENST00000551506_5end | ||
|cluster_id=chr12:46662453..46662472,- | |||
|description=CAGE_peak_5_at_SLC38A1_5end | |description=CAGE_peak_5_at_SLC38A1_5end | ||
|id=chr12:46662453..46662472,- | |id=chr12:46662453..46662472,- | ||
|ontology_enrichment_celltype=CL:0000066!3.80e-30!254;CL:0000063!3.51e-12!578;CL:0000548!2.74e-11!679;CL:0000004!2.74e-11!679;CL:0000255!2.74e-11!679;CL:0000012!6.00e-11!682;CL:0000076!4.44e-10!62;CL:0002076!1.35e-09!43;CL:0000223!1.18e-08!59;CL:0000003!3.94e-08!722 | |ontology_enrichment_celltype=CL:0000066!3.80e-30!254;CL:0000063!3.51e-12!578;CL:0000548!2.74e-11!679;CL:0000004!2.74e-11!679;CL:0000255!2.74e-11!679;CL:0000012!6.00e-11!682;CL:0000076!4.44e-10!62;CL:0002076!1.35e-09!43;CL:0000223!1.18e-08!59;CL:0000003!3.94e-08!722 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.19e-08;42 | |ontology_enrichment_celltype_v019=CL:0002076;1.19e-08;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.81e-31,253;CL:0002076,1.49e-10,42;CL:0000076,1.47e-09,63;CL:0000223,1.85e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.21e-07;29 | |ontology_enrichment_development_v019=UBERON:0008947;6.21e-07;29 | ||
|ontology_enrichment_disease=DOID:14566!2.59e-25!239;DOID:162!2.96e-25!235;DOID:305!4.01e-25!106;DOID:0050687!8.82e-22!143;DOID:0050686!2.48e-10!137;DOID:299!2.20e-07!25;DOID:7!7.12e-07!39 | |ontology_enrichment_disease=DOID:14566!2.59e-25!239;DOID:162!2.96e-25!235;DOID:305!4.01e-25!106;DOID:0050687!8.82e-22!143;DOID:0050686!2.48e-10!137;DOID:299!2.20e-07!25;DOID:7!7.12e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:305;4.94e-08;106!DOID:299;1.21e-07;25 | |ontology_enrichment_disease_v019=DOID:305;4.94e-08;106!DOID:299;1.21e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:14566,1.64e-25,239;DOID:162,1.64e-25,235;DOID:305,1.69e-25,106;DOID:0050687,4.75e-22,143;DOID:0050686,2.05e-10,137;DOID:299,1.85e-07,25;DOID:7,6.37e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.07e-10!169;UBERON:0000925!8.07e-10!169;UBERON:0006595!8.07e-10!169;UBERON:0001007!1.26e-08!155;UBERON:0001555!1.26e-08!155;UBERON:0007026!1.26e-08!155;UBERON:0001004!6.10e-08!72;UBERON:0000077!1.17e-07!130;UBERON:0004921!3.81e-07!129;UBERON:0004185!3.81e-07!129 | |ontology_enrichment_uberon=UBERON:0004119!8.07e-10!169;UBERON:0000925!8.07e-10!169;UBERON:0006595!8.07e-10!169;UBERON:0001007!1.26e-08!155;UBERON:0001555!1.26e-08!155;UBERON:0007026!1.26e-08!155;UBERON:0001004!6.10e-08!72;UBERON:0000077!1.17e-07!130;UBERON:0004921!3.81e-07!129;UBERON:0004185!3.81e-07!129 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,2.46e-08,74;UBERON:0004119,3.12e-08,160;UBERON:0000925,3.12e-08,160;UBERON:0006595,3.12e-08,160;UBERON:0001007,5.47e-07,145;UBERON:0001555,5.47e-07,145;UBERON:0007026,5.47e-07,145;UBERON:0000065,5.89e-07,54 | |||
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| ||
|short_description=p5@SLC38A1 | |short_description=p5@SLC38A1 | ||
}} | }} |
Latest revision as of 10:45, 18 September 2015
Short description: | p5@SLC38A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC38A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 116bp_to_ENST00000551506_5end |
EntrezGene: | SLC38A1 |
HGNC: | 13447 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.81e-31 | 253 |
endo-epithelial cell | 1.49e-10 | 42 |
squamous epithelial cell | 1.47e-09 | 63 |
endodermal cell | 1.85e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 2.46e-08 | 74 |
endoderm-derived structure | 3.12e-08 | 160 |
endoderm | 3.12e-08 | 160 |
presumptive endoderm | 3.12e-08 | 160 |
digestive system | 5.47e-07 | 145 |
digestive tract | 5.47e-07 | 145 |
primitive gut | 5.47e-07 | 145 |
respiratory tract | 5.89e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.64e-25 | 239 |
cancer | 1.64e-25 | 235 |
carcinoma | 1.69e-25 | 106 |
cell type cancer | 4.75e-22 | 143 |
organ system cancer | 2.05e-10 | 137 |
adenocarcinoma | 1.85e-07 | 25 |
disease of anatomical entity | 6.37e-07 | 39 |