FFCP PHASE1:Hg19::chr7:39663146..39663225,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:39663146..39663225,+
|short_description=p1@RALA
|description=CAGE_peak_1_at_RALA_5end
|association_with_transcript=0bp_to_ENST00000468201,NM_005402,uc003th...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5898 | |EntrezGene=5898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9839 | |HGNC=9839 | ||
|TSSclassifier=strong | |||
|UniProt=P11233 | |UniProt=P11233 | ||
|association_with_transcript=0bp_to_ENST00000468201,NM_005402,uc003thd.2_5end | |||
|cluster_id=chr7:39663146..39663225,+ | |||
|coexpression_cluster_id=C2895 | |||
|description=CAGE_peak_1_at_RALA_5end | |||
|id=chr7:39663146..39663225,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.61e-19!682;CL:0000548!4.99e-19!679;CL:0000004!4.99e-19!679;CL:0000255!4.99e-19!679;CL:0000003!9.96e-17!722;CL:0002139!1.04e-13!24;CL:0000115!4.42e-12!35;CL:0000144!1.11e-11!625;CL:0000063!1.48e-10!578;CL:0000071!2.17e-10!18;CL:0002546!2.17e-10!18;CL:0002078!9.25e-09!44;CL:0000066!1.55e-08!254;CL:0002371!1.93e-08!591;CL:0002321!1.01e-07!248;CL:0000220!2.33e-07!246;CL:0000222!4.17e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.08e-13;24!CL:0000115;9.67e-11;36!CL:0000071;2.20e-10;18!CL:0000860;1.07e-09;33!CL:0002057;1.07e-09;33!CL:0000473;4.53e-08;39!CL:0000234;4.53e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.04e-13,24;CL:0000115,2.37e-12,36;CL:0000071,2.17e-10,18;CL:0002546,2.17e-10,18;CL:0002078,5.08e-09,45;CL:0000066,2.06e-08,253;CL:0002321,5.22e-08,250;CL:0000222,1.99e-07,121;CL:0000473,7.68e-07,48;CL:0000234,7.68e-07,48 | |||
|ontology_enrichment_development_v019=CL:0002546;2.20e-10;18 | |||
|ontology_enrichment_disease=DOID:2394!2.31e-07!14;DOID:193!2.91e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.33e-07;14!DOID:193;3.06e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.31e-07,14;DOID:193,2.91e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000055!5.08e-13!69;UBERON:0002049!1.38e-11!79;UBERON:0007798!1.38e-11!79;UBERON:0001981!1.43e-11!60;UBERON:0007500!1.43e-11!60;UBERON:0004537!1.43e-11!60;UBERON:0006965!1.43e-11!60;UBERON:0001986!2.17e-10!18;UBERON:0004638!2.17e-10!18;UBERON:0004852!2.17e-10!18;UBERON:0001637!1.97e-09!42;UBERON:0003509!1.97e-09!42;UBERON:0004572!1.97e-09!42;UBERON:0004872!2.25e-09!84;UBERON:0000487!2.84e-08!22;UBERON:0004535!3.97e-08!110;UBERON:0004573!2.06e-07!33;UBERON:0004571!2.06e-07!33;UBERON:0001009!3.99e-07!113;UBERON:0003914!6.30e-07!118;UBERON:0000947!7.75e-07!21;UBERON:0010191!7.75e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.20e-10;18!UBERON:0001986;2.20e-10;18!UBERON:0004852;2.20e-10;18!UBERON:0000487;3.10e-08;22!UBERON:0007500;4.39e-08;56!UBERON:0001981;4.39e-08;56!UBERON:0004537;4.39e-08;56!UBERON:0001637;1.69e-07;42!UBERON:0003509;1.69e-07;42!UBERON:0004572;1.69e-07;42!UBERON:0000055;2.04e-07;65!UBERON:0004573;6.41e-07;33!UBERON:0004571;6.41e-07;33!UBERON:0000947;7.65e-07;21!UBERON:0010191;7.65e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,6.53e-13,68;UBERON:0002049,1.79e-11,78;UBERON:0007798,1.79e-11,78;UBERON:0007500,1.82e-11,59;UBERON:0001981,1.82e-11,59;UBERON:0004537,1.82e-11,59;UBERON:0006965,1.82e-11,59;UBERON:0004638,2.17e-10,18;UBERON:0001986,2.17e-10,18;UBERON:0004852,2.17e-10,18;UBERON:0001637,1.97e-09,42;UBERON:0003509,1.97e-09,42;UBERON:0004572,1.97e-09,42;UBERON:0004872,2.93e-09,83;UBERON:0000487,2.84e-08,22;UBERON:0004535,5.12e-08,109;UBERON:0004573,2.06e-07,33;UBERON:0004571,2.06e-07,33;UBERON:0001009,5.08e-07,112;UBERON:0000947,7.75e-07,21;UBERON:0010191,7.75e-07,21;UBERON:0003914,8.39e-07,117 | |||
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| ||
|short_description=p1@RALA | |||
}} | }} |
Latest revision as of 13:22, 18 September 2015
Short description: | p1@RALA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RALA_5end |
Coexpression cluster: | C2895_immature_Mallassezderived_mesenchymal_CD14_Fibroblast_migratory_Endothelial |
Association with transcript: | 0bp_to_ENST00000468201, NM_005402, uc003thd.2_5end |
EntrezGene: | RALA |
HGNC: | 9839 |
UniProt: | P11233 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.04e-13 | 24 |
endothelial cell | 2.37e-12 | 36 |
blood vessel endothelial cell | 2.17e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.17e-10 | 18 |
meso-epithelial cell | 5.08e-09 | 45 |
epithelial cell | 2.06e-08 | 253 |
embryonic cell | 5.22e-08 | 250 |
mesodermal cell | 1.99e-07 | 121 |
defensive cell | 7.68e-07 | 48 |
phagocyte | 7.68e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
vessel | 6.53e-13 | 68 |
vasculature | 1.79e-11 | 78 |
vascular system | 1.79e-11 | 78 |
epithelial tube open at both ends | 1.82e-11 | 59 |
blood vessel | 1.82e-11 | 59 |
blood vasculature | 1.82e-11 | 59 |
vascular cord | 1.82e-11 | 59 |
blood vessel endothelium | 2.17e-10 | 18 |
endothelium | 2.17e-10 | 18 |
cardiovascular system endothelium | 2.17e-10 | 18 |
artery | 1.97e-09 | 42 |
arterial blood vessel | 1.97e-09 | 42 |
arterial system | 1.97e-09 | 42 |
splanchnic layer of lateral plate mesoderm | 2.93e-09 | 83 |
simple squamous epithelium | 2.84e-08 | 22 |
cardiovascular system | 5.12e-08 | 109 |
systemic artery | 2.06e-07 | 33 |
systemic arterial system | 2.06e-07 | 33 |
circulatory system | 5.08e-07 | 112 |
aorta | 7.75e-07 | 21 |
aortic system | 7.75e-07 | 21 |
epithelial tube | 8.39e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.31e-07 | 14 |
reproductive organ cancer | 2.91e-07 | 29 |