FFCP PHASE1:Hg19::chr4:74347454..74347479,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=173 | |EntrezGene=173 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=316 | |HGNC=316 | ||
|TSSclassifier=strong | |||
|UniProt=P43652 | |UniProt=P43652 | ||
|association_with_transcript=0bp_to_NM_001133,uc003hhb.2_5end | |association_with_transcript=0bp_to_NM_001133,uc003hhb.2_5end | ||
|cluster_id=chr4:74347454..74347479,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_1_at_AFM_5end | |description=CAGE_peak_1_at_AFM_5end | ||
|id=chr4:74347454..74347479,+ | |id=chr4:74347454..74347479,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.12e-17!12;CL:0000417!1.12e-17!12;CL:0000668!1.12e-17!12;CL:0000414!1.12e-17!12;CL:0000412!1.12e-17!12;CL:0000182!1.12e-17!12;CL:0002563!9.94e-07!4 | |ontology_enrichment_celltype=CL:0000181!1.12e-17!12;CL:0000417!1.12e-17!12;CL:0000668!1.12e-17!12;CL:0000414!1.12e-17!12;CL:0000412!1.12e-17!12;CL:0000182!1.12e-17!12;CL:0002563!9.94e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.14e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.14e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.07e-11;1 | |||
|ontology_enrichment_disease=DOID:114!6.32e-13!2;DOID:178!2.84e-07!1;DOID:326!2.84e-07!1;DOID:3978!2.84e-07!1;DOID:3394!2.84e-07!1;DOID:5844!2.84e-07!1;DOID:1287!7.00e-07!4 | |ontology_enrichment_disease=DOID:114!6.32e-13!2;DOID:178!2.84e-07!1;DOID:326!2.84e-07!1;DOID:3978!2.84e-07!1;DOID:3394!2.84e-07!1;DOID:5844!2.84e-07!1;DOID:1287!7.00e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:114;2.63e-21;2!DOID:178;1.72e-11;1!DOID:326;1.72e-11;1!DOID:3978;1.72e-11;1!DOID:3394;1.72e-11;1!DOID:5844;1.72e-11;1!DOID:1287;3.78e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.37e-21,2;DOID:178,1.63e-11,1;DOID:326,1.63e-11,1;DOID:3978,1.63e-11,1;DOID:3394,1.63e-11,1;DOID:5844,1.63e-11,1;DOID:1287,3.59e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0009854!7.20e-20!23;UBERON:0002107!2.23e-19!19;UBERON:0006925!2.23e-19!19;UBERON:0008836!2.23e-19!19;UBERON:0009856!2.10e-17!26;UBERON:0005057!2.32e-17!26;UBERON:0008835!1.43e-16!22;UBERON:0003894!1.43e-16!22;UBERON:0007499!1.94e-14!25;UBERON:0009497!1.94e-14!25;UBERON:0000015!1.94e-14!25;UBERON:0002423!1.94e-14!25;UBERON:0006235!1.94e-14!25;UBERON:0004161!1.94e-14!25;UBERON:0003929!1.44e-13!54;UBERON:0002368!1.70e-12!35;UBERON:0002365!2.07e-11!31;UBERON:0002330!2.07e-11!31;UBERON:0005172!3.00e-11!55;UBERON:0005173!3.00e-11!55;UBERON:0002417!6.10e-10!61;UBERON:0000916!6.10e-10!61;UBERON:0005911!1.23e-09!82;UBERON:0004921!1.23e-09!129;UBERON:0004185!1.23e-09!129;UBERON:0000949!2.18e-09!45;UBERON:0001007!1.61e-08!155;UBERON:0001555!1.61e-08!155;UBERON:0007026!1.61e-08!155;UBERON:0002530!2.08e-08!59;UBERON:0004119!1.61e-07!169;UBERON:0000925!1.61e-07!169;UBERON:0006595!1.61e-07!169;UBERON:0002146!3.41e-07!1;UBERON:0005623!3.41e-07!1;UBERON:0005409!3.66e-07!35;UBERON:0001154!3.85e-07!1;UBERON:0001153!3.85e-07!1;UBERON:0005177!7.01e-07!107;UBERON:0007190!7.40e-07!1;UBERON:0001242!9.94e-07!4;UBERON:0001262!9.94e-07!4;UBERON:0004786!9.94e-07!4;UBERON:0004808!9.94e-07!4;UBERON:0001277!9.94e-07!4 | |ontology_enrichment_uberon=UBERON:0009854!7.20e-20!23;UBERON:0002107!2.23e-19!19;UBERON:0006925!2.23e-19!19;UBERON:0008836!2.23e-19!19;UBERON:0009856!2.10e-17!26;UBERON:0005057!2.32e-17!26;UBERON:0008835!1.43e-16!22;UBERON:0003894!1.43e-16!22;UBERON:0007499!1.94e-14!25;UBERON:0009497!1.94e-14!25;UBERON:0000015!1.94e-14!25;UBERON:0002423!1.94e-14!25;UBERON:0006235!1.94e-14!25;UBERON:0004161!1.94e-14!25;UBERON:0003929!1.44e-13!54;UBERON:0002368!1.70e-12!35;UBERON:0002365!2.07e-11!31;UBERON:0002330!2.07e-11!31;UBERON:0005172!3.00e-11!55;UBERON:0005173!3.00e-11!55;UBERON:0002417!6.10e-10!61;UBERON:0000916!6.10e-10!61;UBERON:0005911!1.23e-09!82;UBERON:0004921!1.23e-09!129;UBERON:0004185!1.23e-09!129;UBERON:0000949!2.18e-09!45;UBERON:0001007!1.61e-08!155;UBERON:0001555!1.61e-08!155;UBERON:0007026!1.61e-08!155;UBERON:0002530!2.08e-08!59;UBERON:0004119!1.61e-07!169;UBERON:0000925!1.61e-07!169;UBERON:0006595!1.61e-07!169;UBERON:0002146!3.41e-07!1;UBERON:0005623!3.41e-07!1;UBERON:0005409!3.66e-07!35;UBERON:0001154!3.85e-07!1;UBERON:0001153!3.85e-07!1;UBERON:0005177!7.01e-07!107;UBERON:0007190!7.40e-07!1;UBERON:0001242!9.94e-07!4;UBERON:0001262!9.94e-07!4;UBERON:0004786!9.94e-07!4;UBERON:0004808!9.94e-07!4;UBERON:0001277!9.94e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.41e-14;19!UBERON:0006925;4.41e-14;19!UBERON:0002423;1.12e-10;25!UBERON:0002108;2.63e-09;4!UBERON:0002365;1.39e-08;31!UBERON:0002330;1.39e-08;31!UBERON:0002368;1.78e-07;33!UBERON:0005409;2.10e-07;22!UBERON:0005172;3.25e-07;52!UBERON:0005173;3.25e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.41e-14,19;UBERON:0006925,4.41e-14,19;UBERON:0008836,4.41e-14,19;UBERON:0008835,3.78e-12,22;UBERON:0003894,3.78e-12,22;UBERON:0009854,1.29e-11,23;UBERON:0007499,1.12e-10,25;UBERON:0009497,1.12e-10,25;UBERON:0000015,1.12e-10,25;UBERON:0002423,1.12e-10,25;UBERON:0006235,1.12e-10,25;UBERON:0004161,1.12e-10,25;UBERON:0009856,2.92e-10,26;UBERON:0002108,2.68e-09,4;UBERON:0005172,4.96e-09,54;UBERON:0005173,4.96e-09,54;UBERON:0002365,1.39e-08,31;UBERON:0002330,1.39e-08,31;UBERON:0002417,4.67e-08,60;UBERON:0000916,4.67e-08,60;UBERON:0002368,1.39e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4754301843051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,652.788429332429,198.53109776888,135.881678536723,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,634.938713773265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,621.72566032985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,5.81599647657131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,1.19807400299395,2.57535628881943,0,0,0,0,0.86661500537946,0.494495150286999,0.674035438541849,0,0,0,0,0,0,0,0,0,0,0,9.77190770510057,7.71082445584472,0,0,0,0,0,0,0,0,0,0,0,0,0,424.268716498049,129.856751133977,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24542945209498,0,0,0,0,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,2.19100916473955,0,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.190941474834495,0,0,0,0,0,0,0,0,0,0,4.69281884806909,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4754301843051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,652.788429332429,198.53109776888,135.881678536723,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,634.938713773265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,621.72566032985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,5.81599647657131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,1.19807400299395,2.57535628881943,0,0,0,0,0.86661500537946,0.494495150286999,0.674035438541849,0,0,0,0,0,0,0,0,0,0,0,9.77190770510057,7.71082445584472,0,0,0,0,0,0,0,0,0,0,0,0,0,424.268716498049,129.856751133977,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24542945209498,0,0,0,0,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,2.19100916473955,0,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.190941474834495,0,0,0,0,0,0,0,0,0,0,4.69281884806909,0,0,0,0,0 | ||
|short_description=p1@AFM | |short_description=p1@AFM | ||
}} | }} |
Latest revision as of 13:32, 18 September 2015
Short description: | p1@AFM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AFM_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_NM_001133, uc003hhb.2_5end |
EntrezGene: | AFM |
HGNC: | 316 |
UniProt: | P43652 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.14e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 4.41e-14 | 19 |
digestive gland | 4.41e-14 | 19 |
liver bud | 4.41e-14 | 19 |
hepatic diverticulum | 3.78e-12 | 22 |
liver primordium | 3.78e-12 | 22 |
digestive tract diverticulum | 1.29e-11 | 23 |
epithelial sac | 1.12e-10 | 25 |
epithelium of foregut-midgut junction | 1.12e-10 | 25 |
anatomical boundary | 1.12e-10 | 25 |
hepatobiliary system | 1.12e-10 | 25 |
foregut-midgut junction | 1.12e-10 | 25 |
septum transversum | 1.12e-10 | 25 |
sac | 2.92e-10 | 26 |
small intestine | 2.68e-09 | 4 |
abdomen element | 4.96e-09 | 54 |
abdominal segment element | 4.96e-09 | 54 |
exocrine gland | 1.39e-08 | 31 |
exocrine system | 1.39e-08 | 31 |
abdominal segment of trunk | 4.67e-08 | 60 |
abdomen | 4.67e-08 | 60 |
endocrine gland | 1.39e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.37e-21 | 2 |
vascular disease | 1.63e-11 | 1 |
ischemia | 1.63e-11 | 1 |
extrinsic cardiomyopathy | 1.63e-11 | 1 |
myocardial ischemia | 1.63e-11 | 1 |
myocardial infarction | 1.63e-11 | 1 |
cardiovascular system disease | 3.59e-11 | 4 |