FFCP PHASE1:Hg19::chr11:60970984..60970989,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=643834 | |EntrezGene=643834 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8885 | |HGNC=8885 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAB4 | |UniProt=F8WAB4 | ||
|association_with_transcript=0bp_to_ENST00000537954,ENST00000539649,NM_001079807,uc001nqx.2,uc010rld.1_5end | |association_with_transcript=0bp_to_ENST00000537954,ENST00000539649,NM_001079807,uc001nqx.2,uc010rld.1_5end | ||
|cluster_id=chr11:60970984..60970989,+ | |||
|coexpression_cluster_id=C238 | |coexpression_cluster_id=C238 | ||
|description=CAGE_peak_1_at_PGA3_5end | |description=CAGE_peak_1_at_PGA3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0001014;3.00e-07;2!CL:0001016;3.00e-07;2 | |ontology_enrichment_celltype_v019=CL:0001014;3.00e-07;2!CL:0001016;3.00e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0001014,3.09e-07,2;CL:0001016,3.09e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.59e-15;7!UBERON:0009143;1.82e-13;1!UBERON:0008801;5.07e-13;1!UBERON:0006965;2.74e-07;2!UBERON:0008814;3.28e-07;2!UBERON:0010056;3.28e-07;2 | |ontology_enrichment_development_v019=UBERON:0004872;1.59e-15;7!UBERON:0009143;1.82e-13;1!UBERON:0008801;5.07e-13;1!UBERON:0006965;2.74e-07;2!UBERON:0008814;3.28e-07;2!UBERON:0010056;3.28e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.41e-18!115;UBERON:0004177!2.21e-13!7;UBERON:0002106!3.44e-09!3;UBERON:0004854!3.44e-09!3;UBERON:0009034!3.44e-09!3;UBERON:0002095!3.44e-09!3;UBERON:0004782!3.44e-09!3;UBERON:0003281!3.44e-09!3;UBERON:0009664!3.44e-09!3;UBERON:0002296!3.44e-09!3;UBERON:0005602!3.44e-09!3;UBERON:0001179!3.44e-09!3;UBERON:0006293!3.44e-09!3;UBERON:0008814!1.17e-07!15;UBERON:0002390!3.97e-07!102;UBERON:0003061!3.97e-07!102;UBERON:0000062!4.77e-07!511 | |ontology_enrichment_uberon=UBERON:0007023!7.41e-18!115;UBERON:0004177!2.21e-13!7;UBERON:0002106!3.44e-09!3;UBERON:0004854!3.44e-09!3;UBERON:0009034!3.44e-09!3;UBERON:0002095!3.44e-09!3;UBERON:0004782!3.44e-09!3;UBERON:0003281!3.44e-09!3;UBERON:0009664!3.44e-09!3;UBERON:0002296!3.44e-09!3;UBERON:0005602!3.44e-09!3;UBERON:0001179!3.44e-09!3;UBERON:0006293!3.44e-09!3;UBERON:0008814!1.17e-07!15;UBERON:0002390!3.97e-07!102;UBERON:0003061!3.97e-07!102;UBERON:0000062!4.77e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.25e-16;3!UBERON:0002336;2.05e-13;1!UBERON:0011215;2.05e-13;1!UBERON:0001018;2.05e-13;1!UBERON:0002473;2.05e-13;1!UBERON:0005340;2.05e-13;1!UBERON:0003544;2.05e-13;1!UBERON:0005970;2.05e-13;1!UBERON:0002316;2.05e-13;1!UBERON:0001020;2.05e-13;1!UBERON:0002437;2.05e-13;1!UBERON:0001831;5.07e-13;1!UBERON:0001567;5.07e-13;1!UBERON:0004177;4.12e-10;5!UBERON:0005057;4.12e-10;5!UBERON:0001041;2.84e-08;14!UBERON:0004921;8.04e-08;33!UBERON:0005162;2.43e-07;2!UBERON:0000122;2.43e-07;2!UBERON:0001829;3.81e-07;2!UBERON:0004089;3.81e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002106;3.25e-16;3!UBERON:0002336;2.05e-13;1!UBERON:0011215;2.05e-13;1!UBERON:0001018;2.05e-13;1!UBERON:0002473;2.05e-13;1!UBERON:0005340;2.05e-13;1!UBERON:0003544;2.05e-13;1!UBERON:0005970;2.05e-13;1!UBERON:0002316;2.05e-13;1!UBERON:0001020;2.05e-13;1!UBERON:0002437;2.05e-13;1!UBERON:0001831;5.07e-13;1!UBERON:0001567;5.07e-13;1!UBERON:0004177;4.12e-10;5!UBERON:0005057;4.12e-10;5!UBERON:0001041;2.84e-08;14!UBERON:0004921;8.04e-08;33!UBERON:0005162;2.43e-07;2!UBERON:0000122;2.43e-07;2!UBERON:0001829;3.81e-07;2!UBERON:0004089;3.81e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.11e-16,3;UBERON:0004854,4.11e-16,3;UBERON:0009034,4.11e-16,3;UBERON:0002095,4.11e-16,3;UBERON:0004782,4.11e-16,3;UBERON:0003281,4.11e-16,3;UBERON:0009664,4.11e-16,3;UBERON:0002296,4.11e-16,3;UBERON:0005602,4.11e-16,3;UBERON:0001179,4.11e-16,3;UBERON:0006293,4.11e-16,3;UBERON:0000945,1.11e-13,8;UBERON:0010039,1.11e-13,8;UBERON:0002336,2.06e-13,1;UBERON:0011215,2.06e-13,1;UBERON:0001018,2.06e-13,1;UBERON:0002473,2.06e-13,1;UBERON:0005340,2.06e-13,1;UBERON:0003544,2.06e-13,1;UBERON:0005970,2.06e-13,1;UBERON:0002316,2.06e-13,1;UBERON:0001020,2.06e-13,1;UBERON:0002437,2.06e-13,1;UBERON:0001831,5.38e-13,1;UBERON:0001567,5.38e-13,1;UBERON:0008801,5.38e-13,1;UBERON:0005409,4.40e-11,25;UBERON:0004177,1.98e-07,7;UBERON:0005057,1.98e-07,7;UBERON:0005162,2.43e-07,2;UBERON:0000122,2.43e-07,2;UBERON:0001829,3.93e-07,2;UBERON:0004089,3.93e-07,2 | |||
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| ||
|short_description=p1@PGA3 | |short_description=p1@PGA3 | ||
}} | }} |
Latest revision as of 15:20, 18 September 2015
Short description: | p1@PGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGA3_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | 0bp_to_ENST00000537954, ENST00000539649, NM_001079807, uc001nqx.2, uc010rld.1_5end |
EntrezGene: | PGA3 |
HGNC: | 8885 |
UniProt: | F8WAB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 3.09e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.11e-16 | 3 |
gastrointestinal system mesentery | 4.11e-16 | 3 |
stomach region | 4.11e-16 | 3 |
mesentery | 4.11e-16 | 3 |
gastrointestinal system serosa | 4.11e-16 | 3 |
mesentery of stomach | 4.11e-16 | 3 |
gut mesentery | 4.11e-16 | 3 |
dorsal mesentery | 4.11e-16 | 3 |
dorsal mesogastrium | 4.11e-16 | 3 |
peritoneal cavity | 4.11e-16 | 3 |
spleen primordium | 4.11e-16 | 3 |
stomach | 1.11e-13 | 8 |
food storage organ | 1.11e-13 | 8 |
corpus callosum | 2.06e-13 | 1 |
central nervous system cell part cluster | 2.06e-13 | 1 |
axon tract | 2.06e-13 | 1 |
intercerebral commissure | 2.06e-13 | 1 |
dorsal telencephalic commissure | 2.06e-13 | 1 |
brain white matter | 2.06e-13 | 1 |
brain commissure | 2.06e-13 | 1 |
white matter | 2.06e-13 | 1 |
nervous system commissure | 2.06e-13 | 1 |
cerebral hemisphere white matter | 2.06e-13 | 1 |
parotid gland | 5.38e-13 | 1 |
cheek | 5.38e-13 | 1 |
parotid gland primordium | 5.38e-13 | 1 |
gastrointestinal system | 4.40e-11 | 25 |
hemopoietic organ | 1.98e-07 | 7 |
immune organ | 1.98e-07 | 7 |
multi cell component structure | 2.43e-07 | 2 |
neuron projection bundle | 2.43e-07 | 2 |
major salivary gland | 3.93e-07 | 2 |
midface | 3.93e-07 | 2 |