FFCP PHASE1:Hg19::chr8:67039329..67039377,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84675 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14215 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BYV6 | |||
|association_with_transcript=51bp_to_ENST00000276573,ENST00000350034,NM_033058,NM_184085,NM_184086,NM_184087,uc003xvu.2,uc003xvv.2,uc003xvw.2,uc003xvx.2_5end | |||
|cluster_id=chr8:67039329..67039377,+ | |||
|description=CAGE_peak_1_at_TRIM55_5end | |||
|id=chr8:67039329..67039377,+ | |||
|ontology_enrichment_celltype=CL:0000680!1.20e-10!57;CL:0000056!1.20e-10!57;CL:0000355!1.20e-10!57;CL:0000183!2.22e-10!59;CL:0000187!8.79e-09!54;CL:0000188!9.98e-08!9;CL:0000393!6.37e-07!60;CL:0000211!6.37e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000188;2.38e-09;9!CL:0000680;4.62e-08;7!CL:0000056;9.70e-08;4!CL:0002620;1.40e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.79e-09,9;CL:0000515,9.88e-08,4;CL:0002620,1.56e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000515;9.70e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.13e-07;5!DOID:450;3.13e-07;5!DOID:66;3.13e-07;5!DOID:423;3.13e-07;5!DOID:0080000;3.13e-07;5!DOID:11722;3.13e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.22e-07,5;DOID:450,3.22e-07,5;DOID:66,3.22e-07,5;DOID:423,3.22e-07,5;DOID:0080000,3.22e-07,5;DOID:11722,3.22e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0004290!1.76e-14!70;UBERON:0000481!8.09e-14!347;UBERON:0003103!2.00e-13!69;UBERON:0000914!2.66e-13!83;UBERON:0002329!2.66e-13!83;UBERON:0003077!2.66e-13!83;UBERON:0003059!2.66e-13!83;UBERON:0007282!2.66e-13!83;UBERON:0009618!2.66e-13!83;UBERON:0007285!2.66e-13!83;UBERON:0001134!2.82e-13!61;UBERON:0002036!2.82e-13!61;UBERON:0003082!2.82e-13!61;UBERON:0000475!3.00e-13!365;UBERON:0002385!5.13e-13!63;UBERON:0001015!5.13e-13!63;UBERON:0000383!5.13e-13!63;UBERON:0005256!2.16e-12!143;UBERON:0003104!4.80e-11!238;UBERON:0009142!4.80e-11!238;UBERON:0000486!9.47e-11!82;UBERON:0000483!1.23e-09!309;UBERON:0000119!3.06e-09!312;UBERON:0000467!6.20e-09!625;UBERON:0002100!6.45e-09!216;UBERON:0000480!7.90e-09!626;UBERON:0000468!1.42e-08!659;UBERON:0000062!1.56e-07!511;UBERON:0002113!4.86e-07!27;UBERON:0003918!4.86e-07!27;UBERON:0005095!4.86e-07!27;UBERON:0007687!4.86e-07!27;UBERON:0004923!5.53e-07!57;UBERON:0005631!6.31e-07!14;UBERON:0000158!6.31e-07!14;UBERON:0000490!7.06e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.87e-19;16!UBERON:0002036;1.87e-19;16!UBERON:0002385;2.81e-15;31!UBERON:0001015;2.81e-15;31!UBERON:0000383;2.81e-15;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,1.21e-11,68;UBERON:0003104,3.98e-10,160;UBERON:0009142,3.98e-10,160;UBERON:0002329,6.64e-09,71;UBERON:0003059,6.64e-09,71;UBERON:0007282,6.64e-09,71;UBERON:0004290,6.64e-09,71;UBERON:0009618,6.64e-09,71;UBERON:0003077,1.12e-08,72;UBERON:0007285,1.12e-08,72;UBERON:0007524,1.86e-08,73;UBERON:0007503,4.15e-08,78;UBERON:0005631,4.30e-08,14;UBERON:0000158,4.30e-08,14;UBERON:0001134,6.32e-08,62;UBERON:0002036,6.32e-08,62;UBERON:0003082,6.32e-08,62;UBERON:0002097,1.74e-07,41;UBERON:0002385,1.77e-07,64;UBERON:0001015,1.77e-07,64;UBERON:0000383,1.77e-07,64;UBERON:0002100,1.94e-07,199;UBERON:0004797,5.88e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,10.4851858622483,4.22027165165526,0,0,0.672325146451775,1.80808358407193,2.19093027116212,1.46379839637152,0.246242116153576,0.816002764977012,0,0.572471974262113,0.410623275218653,0,0,0,0,0,0,1.23852898652861,0,0,0,0,8.10364625178303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,1.10864698731282,0.43917392846563,0.785874452986276,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29239330327907,3.04541115870403,0,1.41867352879343,10.6528744027038,0,6.166688710429,3.42332138939743,0.134710672069688,0.163461903113459,0,0,0,0,0,0,1.05691048779388,0.161872944368132,0.421352420106746,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0.907457465280168,7.5343646989322,2.13557388818567,2.33125091275518,11.1033705551229,8.55335992679043,0,1.67505170698431,3.03797398034279,0.68205903612839,3.28163906517349,3.49789614840738,0,27.3357386237793,31.7369109417067,8.47802961552438,0,0.545492241181669,0,0,0,0.232387885739037,0.621966330092223,0.252320850875628,0,1.56449532329816,2.57296375277154,5.52539685409922,0,0,0,0,0,0,0,0,0,0,0,0,5.60967095213783,0,0,29.1536580090211,9.82827216677626,20.0868568271677,0,0.122988438543114,0,0.109750285408626,0,0,0.555530670951178,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,1.87467667973554,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0,0.871533458600294,0,0,0,0,0,0,44.2174405626227,41.2626724002601,15.2052478687284,96.8719811127835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,6.6031546995743,0.195801157462741,1.02943027143257,0,0,0,5.75942385747893,8.32177197552485,6.35019615992329,0,0,0,0,0,0,0,0.616838775210622,0,1.72467027628999,0.519254429183621,0.348631135379878,0,0.200506470303285,0,0,0,0,0.451199612907412,2.46449078734127,1.56869953835371,0,2.11103257785751,0,0.170093705276516,0.431831832204279,0,1.62567862526312,0.501689773854853,14.0181950174771,9.14183609821597,4.92524460388792,0,0,5.89835287767695,0,0,21.4325304227262,0,0,0,0,0,19.817497249885,1.23238893691716,1.99554777143968,5.78913604435028,0.537101224341368,1.74020032697074,5.79541066429486,43.0024732173741,0,0.192190067365106,0.382838137483752,0,3.253918845081,1.25924938732256,1.3940745403212,0,0,0,0.18532421910392,0,0.744316738719335,6.32758849437452,0.190630193923825,3.58256907835867,0,0.318203247925937,0,0.899362287916574,0,0.942499218765491,0.404364963146632,0,0,0.975267478179181,0,0,0,0,0,0.551365343546124,0.66343897524122,0,1.73632660280006,0.655894752046633,0.202910376962704,0,0.281695602532241,0.573645408816206,0.0982490410131212,0,7.44998234548255,0,0,0,0,0,0,0,20.9940675732218,0,0,0,0,0,0,0,0,0,0,0,0,12.6052403930418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0.334330152832435,0,3.81991175580304,14.8482340416319,1.22864280839693,0,0.140669416410513,0,0,51.9368503994864,0.19924798825107,0,0,0,1.84627208191604,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,0,0,3.81380475439149,0,3.79217710565611,0,0,3.54296554325536,0,6.10326945268333,4.20201187738654,4.13766666534966,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0.31900115973192,1.09917112082235,0,0,0,0,0,0,0,0,0,25.5307658078913,29.7083710849649,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,15.248975298677,0,0.547364367646998,1.17398771359254,33.2609119961707,0,0,0,0,0.300646838828985,0,0,0,0,0,0.569219092059585,54.3604718211504,0,0,0,5.2418000472609,0,0,0,0,0.872901148395775,0.441280633457501,3.61569185248852,0,7.7498698564166,0.0633107959558787,0,0,0,1.39866726707491,0,0,0.171594997861965,0,3.23056592470125,0,0,0,0,24.8497507315306,0,0,0,0,0,12.2884256559792,28.6450530014605,4.30723814746088,7.78748101946065,14.1644595885068,16.7378593081404,82.5684876861866,0,0,0,0,0,0,0.0846733320657845,0.795229689809303,0,0,0,0,0,0,0,0,2.12775409707835,0.629455057619977,0,0,0,17.1526878329608,14.5660233480395,37.3774750352482,2.17199840701485,0,6.20515984207877,1.19730191562487,0,0,0,19.637999312863,9.27548222385549,0.517131825446202,0.92562821219883,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0.157054096250234,0,0,0.250381861413,0,0,0.124192805882767,0,0,0,0,0,0,2.60857851499485,0,0,0,0.189403005275089,0,0.889811221596536,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0.521745061811734,0,0.380805212168795,0,0.545545977607678,0,0.464033759878494,0,134.40932892682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0.54604819096007,0,0,0,0,0,0,0,0,0.918736432059601,0,0,0,0,0,0,0.161475645631851,0,0,0,4.58571496304198,7.16259130132097,0,0,0,0.376051641746286,0,0,0,0.163771917510097,0,0,0,0,0,0,0,8.9318012110073,0,0,8.0355275381743,0,3.0348280211831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| |||
|short_description=p1@TRIM55 | |||
}} |
Latest revision as of 20:40, 18 September 2015
Short description: | p1@TRIM55 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM55_5end |
Coexpression cluster: | NA |
Association with transcript: | 51bp_to_ENST00000276573, ENST00000350034, NM_033058, NM_184085, NM_184086, NM_184087, uc003xvu.2, uc003xvv.2, uc003xvw.2, uc003xvx.2_5end |
EntrezGene: | TRIM55 |
HGNC: | 14215 |
UniProt: | Q9BYV6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.79e-09 | 9 |
skeletal muscle myoblast | 9.88e-08 | 4 |
skin fibroblast | 1.56e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
compound organ | 1.21e-11 | 68 |
mesenchyme | 3.98e-10 | 160 |
entire embryonic mesenchyme | 3.98e-10 | 160 |
somite | 6.64e-09 | 71 |
presomitic mesoderm | 6.64e-09 | 71 |
presumptive segmental plate | 6.64e-09 | 71 |
dermomyotome | 6.64e-09 | 71 |
trunk paraxial mesoderm | 6.64e-09 | 71 |
paraxial mesoderm | 1.12e-08 | 72 |
presumptive paraxial mesoderm | 1.12e-08 | 72 |
dense mesenchyme tissue | 1.86e-08 | 73 |
epithelial vesicle | 4.15e-08 | 78 |
extraembryonic membrane | 4.30e-08 | 14 |
membranous layer | 4.30e-08 | 14 |
skeletal muscle tissue | 6.32e-08 | 62 |
striated muscle tissue | 6.32e-08 | 62 |
myotome | 6.32e-08 | 62 |
skin of body | 1.74e-07 | 41 |
muscle tissue | 1.77e-07 | 64 |
musculature | 1.77e-07 | 64 |
musculature of body | 1.77e-07 | 64 |
trunk | 1.94e-07 | 199 |
blood vessel layer | 5.88e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.22e-07 | 5 |
myotonic disease | 3.22e-07 | 5 |
muscle tissue disease | 3.22e-07 | 5 |
myopathy | 3.22e-07 | 5 |
muscular disease | 3.22e-07 | 5 |
myotonic dystrophy | 3.22e-07 | 5 |