FFCP PHASE1:Hg19::chr1:64059025..64059107,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5236 | |EntrezGene=5236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8905 | |HGNC=8905 | ||
|TSSclassifier=strong | |||
|UniProt=P36871 | |UniProt=P36871 | ||
|association_with_transcript=78bp_to_ENST00000371084,NM_002633,uc001dbh.2_5end | |association_with_transcript=78bp_to_ENST00000371084,NM_002633,uc001dbh.2_5end | ||
|cluster_id=chr1:64059025..64059107,+ | |||
|coexpression_cluster_id=C3992 | |coexpression_cluster_id=C3992 | ||
|description=CAGE_peak_1_at_PGM1_5end | |description=CAGE_peak_1_at_PGM1_5end | ||
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|ontology_enrichment_celltype=CL:0000136!4.54e-10!15;CL:0000055!1.26e-09!180;CL:0000325!3.96e-08!39;CL:0000680!9.52e-07!57;CL:0000056!9.52e-07!57;CL:0000355!9.52e-07!57 | |ontology_enrichment_celltype=CL:0000136!4.54e-10!15;CL:0000055!1.26e-09!180;CL:0000325!3.96e-08!39;CL:0000680!9.52e-07!57;CL:0000056!9.52e-07!57;CL:0000355!9.52e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.11e-09;13 | |ontology_enrichment_celltype_v019=CL:0000136;1.11e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000136,4.54e-10,15;CL:0000680,7.09e-07,58;CL:0000056,7.09e-07,58;CL:0000355,7.09e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!2.79e-10!238;UBERON:0009142!2.79e-10!238;UBERON:0002100!4.60e-10!216;UBERON:0005256!8.62e-10!143;UBERON:0000475!5.39e-09!365;UBERON:0000481!6.92e-09!347;UBERON:0002385!1.25e-08!63;UBERON:0001015!1.25e-08!63;UBERON:0000383!1.25e-08!63;UBERON:0001048!1.34e-08!168;UBERON:0001134!1.98e-08!61;UBERON:0002036!1.98e-08!61;UBERON:0003082!1.98e-08!61;UBERON:0000486!5.58e-08!82;UBERON:0004290!2.66e-07!70;UBERON:0000914!3.12e-07!83;UBERON:0002329!3.12e-07!83;UBERON:0003077!3.12e-07!83;UBERON:0003059!3.12e-07!83;UBERON:0007282!3.12e-07!83;UBERON:0009618!3.12e-07!83;UBERON:0007285!3.12e-07!83;UBERON:0000466!3.57e-07!126 | |ontology_enrichment_uberon=UBERON:0003104!2.79e-10!238;UBERON:0009142!2.79e-10!238;UBERON:0002100!4.60e-10!216;UBERON:0005256!8.62e-10!143;UBERON:0000475!5.39e-09!365;UBERON:0000481!6.92e-09!347;UBERON:0002385!1.25e-08!63;UBERON:0001015!1.25e-08!63;UBERON:0000383!1.25e-08!63;UBERON:0001048!1.34e-08!168;UBERON:0001134!1.98e-08!61;UBERON:0002036!1.98e-08!61;UBERON:0003082!1.98e-08!61;UBERON:0000486!5.58e-08!82;UBERON:0004290!2.66e-07!70;UBERON:0000914!3.12e-07!83;UBERON:0002329!3.12e-07!83;UBERON:0003077!3.12e-07!83;UBERON:0003059!3.12e-07!83;UBERON:0007282!3.12e-07!83;UBERON:0009618!3.12e-07!83;UBERON:0007285!3.12e-07!83;UBERON:0000466!3.57e-07!126 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.54e-11,160;UBERON:0009142,1.54e-11,160;UBERON:0002100,1.18e-09,199;UBERON:0005256,1.48e-09,122;UBERON:0001048,2.51e-09,160;UBERON:0002385,9.21e-09,64;UBERON:0001015,9.21e-09,64;UBERON:0000383,9.21e-09,64;UBERON:0001134,1.46e-08,62;UBERON:0002036,1.46e-08,62;UBERON:0003082,1.46e-08,62;UBERON:0000486,4.15e-08,83;UBERON:0002329,1.98e-07,71;UBERON:0003059,1.98e-07,71;UBERON:0007282,1.98e-07,71;UBERON:0004290,1.98e-07,71;UBERON:0009618,1.98e-07,71;UBERON:0003077,2.10e-07,72;UBERON:0007285,2.10e-07,72;UBERON:0007524,2.74e-07,73;UBERON:0007503,9.03e-07,78 | |||
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| ||
|short_description=p1@PGM1 | |short_description=p1@PGM1 | ||
}} | }} |
Latest revision as of 20:58, 18 September 2015
Short description: | p1@PGM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGM1_5end |
Coexpression cluster: | C3992_skeletal_Preadipocyte_mature_Adipocyte_Cardiac_heart_Hepatocyte |
Association with transcript: | 78bp_to_ENST00000371084, NM_002633, uc001dbh.2_5end |
EntrezGene: | PGM1 |
HGNC: | 8905 |
UniProt: | P36871 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 4.54e-10 | 15 |
muscle precursor cell | 7.09e-07 | 58 |
myoblast | 7.09e-07 | 58 |
multi-potent skeletal muscle stem cell | 7.09e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.54e-11 | 160 |
entire embryonic mesenchyme | 1.54e-11 | 160 |
trunk | 1.18e-09 | 199 |
trunk mesenchyme | 1.48e-09 | 122 |
primordium | 2.51e-09 | 160 |
muscle tissue | 9.21e-09 | 64 |
musculature | 9.21e-09 | 64 |
musculature of body | 9.21e-09 | 64 |
skeletal muscle tissue | 1.46e-08 | 62 |
striated muscle tissue | 1.46e-08 | 62 |
myotome | 1.46e-08 | 62 |
multilaminar epithelium | 4.15e-08 | 83 |
somite | 1.98e-07 | 71 |
presomitic mesoderm | 1.98e-07 | 71 |
presumptive segmental plate | 1.98e-07 | 71 |
dermomyotome | 1.98e-07 | 71 |
trunk paraxial mesoderm | 1.98e-07 | 71 |
paraxial mesoderm | 2.10e-07 | 72 |
presumptive paraxial mesoderm | 2.10e-07 | 72 |
dense mesenchyme tissue | 2.74e-07 | 73 |
epithelial vesicle | 9.03e-07 | 78 |