FFCP PHASE1:Hg19::chr18:21269404..21269427,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |EntrezGene=3909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |HGNC=6483 | ||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | ||
|association_with_transcript=-134bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |association_with_transcript=-134bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | ||
|cluster_id=chr18:21269404..21269427,+ | |||
|coexpression_cluster_id=C96 | |coexpression_cluster_id=C96 | ||
|description=CAGE_peak_3_at_LAMA3_5end | |description=CAGE_peak_3_at_LAMA3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!2.75e-16!254;CL:0000076!5.69e-10!62 | |ontology_enrichment_celltype=CL:0000066!2.75e-16!254;CL:0000076!5.69e-10!62 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.50e-13,253;CL:0000076,2.88e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0006603;7.31e-07;65 | |ontology_enrichment_development_v019=UBERON:0006603;7.31e-07;65 | ||
|ontology_enrichment_disease=DOID:305!4.12e-13!106;DOID:0050687!6.49e-11!143 | |ontology_enrichment_disease=DOID:305!4.12e-13!106;DOID:0050687!6.49e-11!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.34e-07;14 | |ontology_enrichment_disease_v019=DOID:1749;2.34e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,3.47e-11,106;DOID:0050687,7.00e-09,143;DOID:1749,5.58e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000481!3.99e-14!347;UBERON:0001007!3.95e-13!155;UBERON:0001555!3.95e-13!155;UBERON:0007026!3.95e-13!155;UBERON:0004119!7.93e-13!169;UBERON:0000925!7.93e-13!169;UBERON:0006595!7.93e-13!169;UBERON:0000064!1.84e-11!219;UBERON:0000468!1.90e-11!659;UBERON:0000467!1.94e-11!625;UBERON:0000480!3.00e-11!626;UBERON:0003064!3.41e-11!37;UBERON:0000477!3.55e-11!286;UBERON:0000062!7.78e-11!511;UBERON:0002050!9.58e-11!605;UBERON:0005423!9.58e-11!605;UBERON:0000922!1.03e-10!612;UBERON:0005157!1.36e-10!51;UBERON:0000923!2.28e-10!604;UBERON:0005291!2.28e-10!604;UBERON:0006598!2.28e-10!604;UBERON:0002532!2.28e-10!604;UBERON:0004111!3.46e-10!241;UBERON:0001008!1.03e-09!45;UBERON:0000161!1.41e-09!35;UBERON:0006554!1.84e-09!44;UBERON:0001004!4.25e-09!72;UBERON:0000077!4.38e-09!130;UBERON:0004921!6.10e-09!129;UBERON:0004185!6.10e-09!129;UBERON:0005153!1.11e-08!37;UBERON:0001046!1.34e-08!19;UBERON:0000483!1.48e-08!309;UBERON:0005156!1.70e-08!59;UBERON:0000990!1.70e-08!59;UBERON:0000119!3.61e-08!312;UBERON:0003104!3.90e-08!238;UBERON:0009142!3.90e-08!238;UBERON:0004122!6.88e-08!15;UBERON:0003101!1.21e-07!22;UBERON:0000079!1.21e-07!22;UBERON:0000162!1.37e-07!14;UBERON:0001353!1.37e-07!14;UBERON:0000163!1.37e-07!14;UBERON:0006866!1.37e-07!14;UBERON:0000164!1.37e-07!14;UBERON:0000931!1.37e-07!14;UBERON:0007023!1.50e-07!115;UBERON:0000464!4.83e-07!104;UBERON:0000475!5.25e-07!365;UBERON:0000065!6.46e-07!53;UBERON:0008947!9.72e-07!38;UBERON:0003258!9.72e-07!38 | |ontology_enrichment_uberon=UBERON:0000481!3.99e-14!347;UBERON:0001007!3.95e-13!155;UBERON:0001555!3.95e-13!155;UBERON:0007026!3.95e-13!155;UBERON:0004119!7.93e-13!169;UBERON:0000925!7.93e-13!169;UBERON:0006595!7.93e-13!169;UBERON:0000064!1.84e-11!219;UBERON:0000468!1.90e-11!659;UBERON:0000467!1.94e-11!625;UBERON:0000480!3.00e-11!626;UBERON:0003064!3.41e-11!37;UBERON:0000477!3.55e-11!286;UBERON:0000062!7.78e-11!511;UBERON:0002050!9.58e-11!605;UBERON:0005423!9.58e-11!605;UBERON:0000922!1.03e-10!612;UBERON:0005157!1.36e-10!51;UBERON:0000923!2.28e-10!604;UBERON:0005291!2.28e-10!604;UBERON:0006598!2.28e-10!604;UBERON:0002532!2.28e-10!604;UBERON:0004111!3.46e-10!241;UBERON:0001008!1.03e-09!45;UBERON:0000161!1.41e-09!35;UBERON:0006554!1.84e-09!44;UBERON:0001004!4.25e-09!72;UBERON:0000077!4.38e-09!130;UBERON:0004921!6.10e-09!129;UBERON:0004185!6.10e-09!129;UBERON:0005153!1.11e-08!37;UBERON:0001046!1.34e-08!19;UBERON:0000483!1.48e-08!309;UBERON:0005156!1.70e-08!59;UBERON:0000990!1.70e-08!59;UBERON:0000119!3.61e-08!312;UBERON:0003104!3.90e-08!238;UBERON:0009142!3.90e-08!238;UBERON:0004122!6.88e-08!15;UBERON:0003101!1.21e-07!22;UBERON:0000079!1.21e-07!22;UBERON:0000162!1.37e-07!14;UBERON:0001353!1.37e-07!14;UBERON:0000163!1.37e-07!14;UBERON:0006866!1.37e-07!14;UBERON:0000164!1.37e-07!14;UBERON:0000931!1.37e-07!14;UBERON:0007023!1.50e-07!115;UBERON:0000464!4.83e-07!104;UBERON:0000475!5.25e-07!365;UBERON:0000065!6.46e-07!53;UBERON:0008947!9.72e-07!38;UBERON:0003258!9.72e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0003937;7.48e-08;12!UBERON:0005399;7.48e-08;12!UBERON:0003101;2.97e-07;22!UBERON:0000079;2.97e-07;22!UBERON:0002367;3.18e-07;11!UBERON:0010147;3.18e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0003937;7.48e-08;12!UBERON:0005399;7.48e-08;12!UBERON:0003101;2.97e-07;22!UBERON:0000079;2.97e-07;22!UBERON:0002367;3.18e-07;11!UBERON:0010147;3.18e-07;11 | ||
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| ||
|short_description=p3@LAMA3 | |short_description=p3@LAMA3 | ||
}} | }} |
Latest revision as of 23:54, 18 September 2015
Short description: | p3@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMA3_5end |
Coexpression cluster: | C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix |
Association with transcript: | -134bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.50e-13 | 253 |
squamous epithelial cell | 2.88e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.47e-11 | 106 |
cell type cancer | 7.00e-09 | 143 |
squamous cell carcinoma | 5.58e-07 | 14 |