FFCP PHASE2:Hg19::chr19:496478..496490,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:8174 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:6765 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=8174 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=6765 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q13477,B2RPL9,Q5UGI7 | ||
|association_with_transcript=0bp_to_ENST00000215637,ENST00000346144,NM_130760,NM_130762,uc002los.2,uc002lot.2,uc010drq.2_5end | |association_with_transcript=0bp_to_ENST00000215637,ENST00000346144,NM_130760,NM_130762,uc002los.2,uc002lot.2,uc010drq.2_5end | ||
|cluster_id=chr19:496478..496490,+ | |cluster_id=chr19:496478..496490,+ | ||
Latest revision as of 06:23, 19 September 2015
| Short description: | p3@MADCAM1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_MADCAM1_5end |
| Coexpression cluster: | C253_spleen_rhabdomyosarcoma_Hepatocyte_small_uterus_liver_rectum |
| Association with transcript: | 0bp_to_ENST00000215637, ENST00000346144, NM_130760, NM_130762, uc002los.2, uc002lot.2, uc010drq.2_5end |
| EntrezGene: | MADCAM1 |
| HGNC: | 6765 |
| UniProt: | Q13477B2RPL9Q5UGI7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@MADCAM1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system | 2.50e-32 | 25 |
| intestine | 5.16e-25 | 17 |
| large intestine | 1.25e-16 | 11 |
| small intestine | 8.25e-14 | 4 |
| colon | 2.75e-13 | 9 |
| digestive system | 1.56e-12 | 145 |
| digestive tract | 1.56e-12 | 145 |
| primitive gut | 1.56e-12 | 145 |
| subdivision of digestive tract | 1.97e-12 | 118 |
| endoderm-derived structure | 4.83e-11 | 160 |
Showing 1 to 10 of 34 entries
