Personal tools

FFCP PHASE1:Hg19::chr5:95768869..95768880,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=5122
|EntrezGene=5122
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=8743
|HGNC=8743
|TSSclassifier=strong
|UniProt=P29120
|UniProt=P29120
|association_with_transcript=71bp_to_uc003kls.1_5end
|association_with_transcript=71bp_to_uc003kls.1_5end
|cluster_id=chr5:95768869..95768880,-
|coexpression_cluster_id=C2834
|description=CAGE_peak_5_at_PCSK1_5end
|description=CAGE_peak_5_at_PCSK1_5end
|id=chr5:95768869..95768880,-
|id=chr5:95768869..95768880,-
|ontology_enrichment_celltype=CL:0000047!4.36e-07!8;CL:0000153!6.78e-07!9;CL:0000447!6.78e-07!9
|ontology_enrichment_celltype=CL:0000047!4.36e-07!8;CL:0000153!6.78e-07!9;CL:0000447!6.78e-07!9
|ontology_enrichment_celltype_v019=CL:0000153;2.46e-13;9!CL:0000447;2.46e-13;9!CL:0000138;3.17e-13;6!CL:0000327;6.66e-08;15
|ontology_enrichment_celltype_v019_2=CL:0000153,2.25e-13,9;CL:0000447,2.25e-13,9;CL:0000058,2.80e-13,6;CL:0000138,2.80e-13,6;CL:0000327,6.33e-08,15
|ontology_enrichment_development_v019=UBERON:0006601;2.68e-09;82
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:171;2.86e-08;10
|ontology_enrichment_disease_v019_2=DOID:171,2.36e-08,10
|ontology_enrichment_uberon=UBERON:0001017!3.61e-30!82;UBERON:0005743!1.46e-29!86;UBERON:0001049!1.72e-28!57;UBERON:0005068!1.72e-28!57;UBERON:0006241!1.72e-28!57;UBERON:0007135!1.72e-28!57;UBERON:0000073!3.39e-28!94;UBERON:0001016!3.39e-28!94;UBERON:0002780!1.15e-25!41;UBERON:0001890!1.15e-25!41;UBERON:0006240!1.15e-25!41;UBERON:0003080!7.51e-25!42;UBERON:0002346!8.44e-24!90;UBERON:0002616!2.86e-22!59;UBERON:0002619!1.43e-21!22;UBERON:0000955!2.99e-21!69;UBERON:0006238!2.99e-21!69;UBERON:0003075!5.13e-21!86;UBERON:0007284!5.13e-21!86;UBERON:0003056!1.66e-19!61;UBERON:0001950!3.38e-19!20;UBERON:0001893!4.92e-19!34;UBERON:0002020!5.17e-19!34;UBERON:0003528!5.17e-19!34;UBERON:0001869!6.30e-19!32;UBERON:0000956!2.10e-18!25;UBERON:0000203!2.10e-18!25;UBERON:0007023!3.20e-18!115;UBERON:0002791!1.05e-17!33;UBERON:0000924!1.14e-16!173;UBERON:0006601!1.14e-16!173;UBERON:0004121!1.15e-14!169;UBERON:0000153!3.36e-12!129;UBERON:0007811!3.36e-12!129;UBERON:0000033!7.48e-12!123;UBERON:0000200!9.04e-11!6;UBERON:0001894!1.54e-08!7;UBERON:0006222!1.54e-08!7;UBERON:0003296!6.63e-08!4;UBERON:0010133!6.63e-08!4
|ontology_enrichment_uberon_v019=UBERON:0001950;7.53e-37;20!UBERON:0002619;2.10e-33;22!UBERON:0000956;3.13e-29;25!UBERON:0000203;3.13e-29;25!UBERON:0001869;1.39e-27;32!UBERON:0001893;2.76e-26;34!UBERON:0003528;8.30e-24;34!UBERON:0002020;8.30e-24;34!UBERON:0002791;1.91e-23;32!UBERON:0002780;6.85e-23;41!UBERON:0001890;6.85e-23;41!UBERON:0002021;1.87e-16;5!UBERON:0000073;1.41e-14;53!UBERON:0002616;1.41e-14;53!UBERON:0000200;3.17e-13;6!UBERON:0003296;1.21e-11;4!UBERON:0010133;1.21e-11;4!UBERON:0000007;6.09e-11;2!UBERON:0001017;2.93e-10;75!UBERON:0001872;1.64e-09;5!UBERON:0000955;2.68e-09;68!UBERON:0001016;9.18e-09;83!UBERON:0001870;1.43e-07;3!UBERON:0007023;6.62e-07;114!UBERON:0001894;7.67e-07;7
|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.28e-37,20;UBERON:0002780,1.11e-33,41;UBERON:0001890,1.11e-33,41;UBERON:0003080,1.11e-33,41;UBERON:0006240,1.11e-33,41;UBERON:0002619,2.54e-33,22;UBERON:0001869,4.91e-30,32;UBERON:0000956,3.70e-29,25;UBERON:0000203,3.70e-29,25;UBERON:0000073,2.69e-28,53;UBERON:0002616,2.69e-28,53;UBERON:0001893,3.95e-28,34;UBERON:0003528,5.82e-28,34;UBERON:0002020,5.82e-28,34;UBERON:0001049,1.40e-26,56;UBERON:0005068,1.40e-26,56;UBERON:0006241,1.40e-26,56;UBERON:0007135,1.40e-26,56;UBERON:0002791,5.76e-26,32;UBERON:0001017,6.01e-26,81;UBERON:0001016,3.73e-25,89;UBERON:0000955,2.96e-23,68;UBERON:0006238,2.96e-23,68;UBERON:0003056,1.71e-21,61;UBERON:0002346,4.16e-20,86;UBERON:0003075,6.64e-17,82;UBERON:0007284,6.64e-17,82;UBERON:0002021,2.69e-16,5;UBERON:0004121,2.78e-13,171;UBERON:0000924,2.78e-13,171;UBERON:0006601,2.78e-13,171;UBERON:0000200,5.31e-13,6;UBERON:0007023,1.09e-12,114;UBERON:0010371,1.78e-12,104;UBERON:0003296,9.21e-12,4;UBERON:0010133,9.21e-12,4;UBERON:0000007,5.00e-11,2;UBERON:0011216,9.23e-11,223;UBERON:0010314,3.62e-10,132;UBERON:0001872,1.02e-09,5;UBERON:0001870,2.20e-07,3;UBERON:0001894,6.59e-07,7;UBERON:0006222,6.59e-07,7
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,1.00267582127178,2.17269778441236,0,1.94653948121054,0.189069634328136,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0.65147236858747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,3.90419561572865,0,0.167516265334349,1.27587750330633,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.462145851343933,0.15350367472613,0,0,0.145016693914229,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,14.612099375548,0.613612095012929,0,0,0,0,0,0.0986434056369336,0,0,0,1.20598527610407,0,0,0,0,0,0,0,2.41320361269025,0.583209226766509,0,0,0,0,0,0,2.4132393686937,0,0,0,0.91153644677601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.123563938946503,0.313265848516366,0.067401132980677,0,0.468528891450678,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,2.27918865441163,0,0,0,0,0,0,1.54435498075768,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0.275078873194468,0.415440338029185,0,0,1.76173714308272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,1.19009341568421,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.22026264901963,1.001527445652,0,0,0.310482014706917,0,0.124980407962107,0,0.285465333544967,0,0.468334905806882,0.724605143054126,0.149254802886874,0,0,0,0.251567901752575,0.889811221596536,0,0,0.466311601748341,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0.737318726261158,0,0.39997479170986,0,0,0,0,0,0,0,1.29389773676018,0,0,0,2.76347396132188,0.619678821295011,0,0,0,12.008561224282,0,0,1.02766760154335,2.8339315265117,1.11743701340006,2.2562800066483,0,2.21303207885497,1.77623210195036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16120270778863,4.68646859168308,0.826747186004736,1.96589011601111,0,0,0,2.98981115411355,0,1.60710550763486,0.672567444437648,2.42786241694653,1.59363533945908,0,0,0,0.40781839786099,1.64431933907123,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,4.2109103423179,0.596852325484105,0,0,0.109940516745429,1.66059127923341,0.154348316215889,0.218559560503957,0,0.245148321753905,2.59244201811789,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,1.35982980381829,0,1.0580536810308,0,1.84870251452567,0,0,0,0,0.305966489225945,0.26721740526556,0.18378979906969,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0.0645889098360061,0,0,0.190941474834495,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,1.00267582127178,2.17269778441236,0,1.94653948121054,0.189069634328136,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0.65147236858747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,3.90419561572865,0,0.167516265334349,1.27587750330633,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.462145851343933,0.15350367472613,0,0,0.145016693914229,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,14.612099375548,0.613612095012929,0,0,0,0,0,0.0986434056369336,0,0,0,1.20598527610407,0,0,0,0,0,0,0,2.41320361269025,0.583209226766509,0,0,0,0,0,0,2.4132393686937,0,0,0,0.91153644677601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.123563938946503,0.313265848516366,0.067401132980677,0,0.468528891450678,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,2.27918865441163,0,0,0,0,0,0,1.54435498075768,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0.275078873194468,0.415440338029185,0,0,1.76173714308272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,1.19009341568421,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.22026264901963,1.001527445652,0,0,0.310482014706917,0,0.124980407962107,0,0.285465333544967,0,0.468334905806882,0.724605143054126,0.149254802886874,0,0,0,0.251567901752575,0.889811221596536,0,0,0.466311601748341,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0.737318726261158,0,0.39997479170986,0,0,0,0,0,0,0,1.29389773676018,0,0,0,2.76347396132188,0.619678821295011,0,0,0,12.008561224282,0,0,1.02766760154335,2.8339315265117,1.11743701340006,2.2562800066483,0,2.21303207885497,1.77623210195036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16120270778863,4.68646859168308,0.826747186004736,1.96589011601111,0,0,0,2.98981115411355,0,1.60710550763486,0.672567444437648,2.42786241694653,1.59363533945908,0,0,0,0.40781839786099,1.64431933907123,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,4.2109103423179,0.596852325484105,0,0,0.109940516745429,1.66059127923341,0.154348316215889,0.218559560503957,0,0.245148321753905,2.59244201811789,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,1.35982980381829,0,1.0580536810308,0,1.84870251452567,0,0,0,0,0.305966489225945,0.26721740526556,0.18378979906969,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0.0645889098360061,0,0,0.190941474834495,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0
|short_description=p5@PCSK1
|short_description=p5@PCSK1
}}
}}

Latest revision as of 08:45, 19 September 2015

Short description:p5@PCSK1
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_5_at_PCSK1_5end
Coexpression cluster:C2834_nonsmall_argyrophil_pineal_somatostatinoma_occipital_Chondrocyte_peripheral
Association with transcript: 71bp_to_uc003kls.1_5end
EntrezGene:PCSK1
HGNC: 8743
UniProt: P29120
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
2.5
5.0
7.5
10.0
12.5
15.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data