FFCP PHASE1:Hg19::chr5:98104312..98104343,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_ENST00000504776_5end | |||
|cluster_id=chr5:98104312..98104343,+ | |||
|description=CAGE_peak_13_at_RGMB_5end | |||
|id=chr5:98104312..98104343,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.13e-22!180;CL:0000057!1.09e-19!75;CL:0002620!2.89e-18!23;CL:0000680!1.62e-11!57;CL:0000056!1.62e-11!57;CL:0000355!1.62e-11!57;CL:0000187!7.82e-10!54;CL:0000359!4.34e-09!32;CL:0000183!6.14e-09!59;CL:0000192!1.02e-08!42;CL:0000514!1.02e-08!42;CL:0000393!6.58e-08!60;CL:0000211!6.58e-08!60;CL:0000222!2.78e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.47e-17;23!CL:0000197;1.48e-10;6!CL:0000098;1.48e-10;6!CL:0002167;1.48e-10;6!CL:0002593;8.06e-09;2!CL:0000056;1.44e-08;4!CL:0002595;1.05e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,9.37e-18,23;CL:0000057,4.56e-13,76;CL:0000197,9.65e-11,6;CL:0000098,9.65e-11,6;CL:0002167,9.65e-11,6;CL:0002593,1.14e-08,2;CL:0000515,1.23e-08,4;CL:0000680,8.71e-08,58;CL:0000056,8.71e-08,58;CL:0000355,8.71e-08,58;CL:0002595,1.29e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000515;1.44e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.79e-12;5!DOID:450;1.79e-12;5!DOID:66;1.79e-12;5!DOID:423;1.79e-12;5!DOID:0080000;1.79e-12;5!DOID:11722;1.79e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.09e-12,5;DOID:450,1.09e-12,5;DOID:66,1.09e-12,5;DOID:423,1.09e-12,5;DOID:0080000,1.09e-12,5;DOID:11722,1.09e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.02e-18!83;UBERON:0002329!3.02e-18!83;UBERON:0003077!3.02e-18!83;UBERON:0003059!3.02e-18!83;UBERON:0007282!3.02e-18!83;UBERON:0009618!3.02e-18!83;UBERON:0007285!3.02e-18!83;UBERON:0004290!6.86e-14!70;UBERON:0002199!7.10e-14!45;UBERON:0002416!7.10e-14!45;UBERON:0003102!1.30e-13!95;UBERON:0000486!1.48e-13!82;UBERON:0002097!4.17e-13!40;UBERON:0002385!6.91e-11!63;UBERON:0001015!6.91e-11!63;UBERON:0000383!6.91e-11!63;UBERON:0001134!1.11e-10!61;UBERON:0002036!1.11e-10!61;UBERON:0003082!1.11e-10!61;UBERON:0001637!1.29e-09!42;UBERON:0003509!1.29e-09!42;UBERON:0004572!1.29e-09!42;UBERON:0000475!3.51e-08!365;UBERON:0004573!5.05e-08!33;UBERON:0004571!5.05e-08!33;UBERON:0005256!2.08e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.87e-09;41!UBERON:0002456;8.06e-09;2!UBERON:0002199;5.10e-08;46!UBERON:0002416;5.10e-08;46!UBERON:0003834;1.05e-07;5!UBERON:0001533;1.05e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,7.84e-13,41;UBERON:0002199,4.05e-11,46;UBERON:0002416,4.05e-11,46;UBERON:0002456,1.14e-08,2;UBERON:0007524,8.25e-08,73;UBERON:0003834,1.29e-07,5;UBERON:0001533,1.29e-07,5;UBERON:0001134,4.10e-07,62;UBERON:0002036,4.10e-07,62;UBERON:0003082,4.10e-07,62;UBERON:0002329,5.31e-07,71;UBERON:0003059,5.31e-07,71;UBERON:0007282,5.31e-07,71;UBERON:0004290,5.31e-07,71;UBERON:0009618,5.31e-07,71;UBERON:0003102,6.79e-07,99;UBERON:0003077,7.28e-07,72;UBERON:0007285,7.28e-07,72;UBERON:0002385,8.24e-07,64;UBERON:0001015,8.24e-07,64;UBERON:0000383,8.24e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0.495065411840187,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.144846518960824,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,2.38336525463794,0.573673241497627,0.709336764396714,0,0,0.24666754841716,0,0,0,0,0,0.70296429550139,0.312160076830321,0.570471821544449,0.896692083310806,0.469737994575059,0.809364721840658,0.702254033511242,1.42907919878425,0.859840221182376,0.103325781175765,0,0.247266929278557,0,0,0.336672227908132,0.375355559615893,0.831192346452549,1.31693286264251,1.22595118319608,0.300476117813194,0.113432183160021,5.91985797773244,0.213557388818567,1.69545520927649,5.10154863343484,1.54578793857658,1.28820270022815,0.558350568994769,1.68776332241266,0.0974370051611986,5.04867548488229,0.920498986422993,1.2931684545505,5.68015348026583,2.21654616100809,1.69560592310488,0,0,0.860413786167011,0,0,0.116193942869518,0,0,0,0,0,2.76269842704961,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0.219500570817251,0,0.100528972411631,0,0.325808305310325,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.517086863031111,0,0,1.06375246633948,0,0,1.41849132023278,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0.958499421966331,0,1.42636905040718,1.30303176000821,0.205476322550383,1.43248770591916,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,1.00034104211935,0.271265023699736,1.87173775377726,2.49800584316026,2.36553622550902,6.09135357962109,0.300946099727719,0,0,0,0.184369168541703,2.17209036170207,0.391602314925481,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0.616838775210622,0.532685175939381,1.06765302817952,0,1.74315567689939,0,0.200506470303285,0,0.114814448164607,0.728364672026868,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.773365746336976,0,0.15350367472613,0.689182862422653,0,0.145016693914229,0.0852266274161009,0.0890320356467374,0.165284915360978,0,0.127612712494584,0.10115778085555,0,2.51849877464512,1.3940745403212,2.15623506123262,0,0.869932992075073,0.37064843820784,0,0,0,0.190630193923825,1.02359116524534,0,1.27281299170375,0,0,0,0.235624804691373,0.404364963146632,0,0.421258456238981,0,2.19342140668156,2.11300293513511,0.409499734223957,0,0,0.551365343546124,0,5.26141062304515,0,0,1.42037263873893,0.30982349809975,0.563391205064483,0.143411352204052,0,0.35667105148125,1.06428319221179,0.211107635297664,0.329294892959902,0,0.699869440489966,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0.222617410045812,0,0,0,0.552567831062295,0,0,0,2.48831670129446,0.359473404589307,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.554698692052555,0.173559738335131,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0.126621591911757,0,0.160317640503067,0,0,0,0,0,0.288109595976299,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0.859530882839914,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0.182248669974074,0,0,0,0,0,0,0,0,0,0.542999601753713,0,3.5924609612035,0,0,2.3854323049959,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0.149254802886874,0.233713309847224,2.21922344601045,0.378806010550178,1.25783950876288,0.889811221596536,0.686520205190771,0.756154618816195,0,0.295710299979268,0.477890301491107,0,0.155262956876259,1.65882483136342,0,0,0,0.380805212168795,0.406870733204662,0.363697318405119,0.107410557042488,0.928067519756987,2.78667122089031,2.00013882331577,0.343395705182793,0.673498977531838,0,0,0,0,0,0.231522474323834,0.734210113519403,4.65630986811867,0,0,1.59020231351293,0.192914038270915,0.168942440653073,0,0,0.911579868532147,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,1.05802783107205,0.6124909547064,0.0642292250964595,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.818859587550484,0.147856086217045,0.270150338473579,0,0.206686796501184,0.126831620387814,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0.0852134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| |||
|short_description=p13@RGMB | |||
}} |
Latest revision as of 10:20, 19 September 2015
Short description: | p13@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RGMB_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000504776_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 9.37e-18 | 23 |
fibroblast | 4.56e-13 | 76 |
receptor cell | 9.65e-11 | 6 |
sensory epithelial cell | 9.65e-11 | 6 |
olfactory epithelial cell | 9.65e-11 | 6 |
smooth muscle cell of the internal thoracic artery | 1.14e-08 | 2 |
skeletal muscle myoblast | 1.23e-08 | 4 |
muscle precursor cell | 8.71e-08 | 58 |
myoblast | 8.71e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.71e-08 | 58 |
smooth muscle cell of the subclavian artery | 1.29e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin of body | 7.84e-13 | 41 |
integument | 4.05e-11 | 46 |
integumental system | 4.05e-11 | 46 |
internal thoracic artery | 1.14e-08 | 2 |
dense mesenchyme tissue | 8.25e-08 | 73 |
thoracic segment blood vessel | 1.29e-07 | 5 |
subclavian artery | 1.29e-07 | 5 |
skeletal muscle tissue | 4.10e-07 | 62 |
striated muscle tissue | 4.10e-07 | 62 |
myotome | 4.10e-07 | 62 |
somite | 5.31e-07 | 71 |
presomitic mesoderm | 5.31e-07 | 71 |
presumptive segmental plate | 5.31e-07 | 71 |
dermomyotome | 5.31e-07 | 71 |
trunk paraxial mesoderm | 5.31e-07 | 71 |
surface structure | 6.79e-07 | 99 |
paraxial mesoderm | 7.28e-07 | 72 |
presumptive paraxial mesoderm | 7.28e-07 | 72 |
muscle tissue | 8.24e-07 | 64 |
musculature | 8.24e-07 | 64 |
musculature of body | 8.24e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.09e-12 | 5 |
myotonic disease | 1.09e-12 | 5 |
muscle tissue disease | 1.09e-12 | 5 |
myopathy | 1.09e-12 | 5 |
muscular disease | 1.09e-12 | 5 |
myotonic dystrophy | 1.09e-12 | 5 |