FFCP PHASE1:Hg19::chr3:108476254..108476257,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84666 | |EntrezGene=84666 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20388 | |HGNC=20388 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQ08 | |UniProt=Q9BQ08 | ||
|association_with_transcript=-23bp_to_ENST00000295755_5end | |association_with_transcript=-23bp_to_ENST00000295755_5end | ||
|cluster_id=chr3:108476254..108476257,- | |||
|coexpression_cluster_id=C201 | |||
|description=CAGE_peak_1_at_RETNLB_5end | |description=CAGE_peak_1_at_RETNLB_5end | ||
|id=chr3:108476254..108476257,- | |id=chr3:108476254..108476257,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.16e-29;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000059!1.10e-32!11;UBERON:0001155!5.55e-26!9;UBERON:0005409!8.74e-25!35;UBERON:0000160!1.22e-24!27;UBERON:0001154!1.16e-15!1;UBERON:0001153!1.16e-15!1;UBERON:0002370!6.96e-15!4;UBERON:0005058!6.96e-15!4;UBERON:0009113!6.96e-15!4;UBERON:0003295!6.96e-15!4;UBERON:0005562!6.96e-15!4;UBERON:0004921!1.65e-14!129;UBERON:0004185!1.65e-14!129;UBERON:0004907!2.12e-12!5;UBERON:0001007!7.04e-12!155;UBERON:0001555!7.04e-12!155;UBERON:0007026!7.04e-12!155;UBERON:0004119!8.59e-11!169;UBERON:0000925!8.59e-11!169;UBERON:0006595!8.59e-11!169;UBERON:0003351!3.04e-10!6;UBERON:0004177!6.56e-09!7;UBERON:0000063!1.09e-08!97;UBERON:0001046!2.71e-07!19 | |ontology_enrichment_uberon=UBERON:0000059!1.10e-32!11;UBERON:0001155!5.55e-26!9;UBERON:0005409!8.74e-25!35;UBERON:0000160!1.22e-24!27;UBERON:0001154!1.16e-15!1;UBERON:0001153!1.16e-15!1;UBERON:0002370!6.96e-15!4;UBERON:0005058!6.96e-15!4;UBERON:0009113!6.96e-15!4;UBERON:0003295!6.96e-15!4;UBERON:0005562!6.96e-15!4;UBERON:0004921!1.65e-14!129;UBERON:0004185!1.65e-14!129;UBERON:0004907!2.12e-12!5;UBERON:0001007!7.04e-12!155;UBERON:0001555!7.04e-12!155;UBERON:0007026!7.04e-12!155;UBERON:0004119!8.59e-11!169;UBERON:0000925!8.59e-11!169;UBERON:0006595!8.59e-11!169;UBERON:0003351!3.04e-10!6;UBERON:0004177!6.56e-09!7;UBERON:0000063!1.09e-08!97;UBERON:0001046!2.71e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0000059;5.05e-64;11!UBERON:0000160;2.24e-56;17!UBERON:0001155;1.49e-50;9!UBERON:0005409;3.02e-44;22!UBERON:0004921;5.65e-30;33!UBERON:0001154;3.16e-29;1!UBERON:0001153;3.16e-29;1!UBERON:0009854;3.16e-29;1!UBERON:0004907;2.54e-23;5!UBERON:0001555;7.21e-12;54!UBERON:0001007;3.14e-10;81!UBERON:0009856;2.43e-08;4!UBERON:0001052;2.61e-08;4!UBERON:0002108;5.38e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000059,5.05e-64,11;UBERON:0000160,2.24e-56,17;UBERON:0001155,1.49e-50,9;UBERON:0005409,3.34e-39,25;UBERON:0001154,3.16e-29,1;UBERON:0001153,3.16e-29,1;UBERON:0001045,3.16e-29,1;UBERON:0004907,2.54e-23,5;UBERON:0004921,8.49e-09,118;UBERON:0001052,2.61e-08,4;UBERON:0001007,3.41e-07,145;UBERON:0001555,3.41e-07,145;UBERON:0007026,3.41e-07,145;UBERON:0002108,5.38e-07,4;UBERON:0001046,7.18e-07,19 | |||
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|short_description=p1@RETNLB | |short_description=p1@RETNLB | ||
}} | }} |
Latest revision as of 11:34, 19 September 2015
Short description: | p1@RETNLB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RETNLB_5end |
Coexpression cluster: | C201_colon_small_adenocarcinoma_duodenum_temporal_signet_gall |
Association with transcript: | -23bp_to_ENST00000295755_5end |
EntrezGene: | RETNLB |
HGNC: | 20388 |
UniProt: | Q9BQ08 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
large intestine | 5.05e-64 | 11 |
intestine | 2.24e-56 | 17 |
colon | 1.49e-50 | 9 |
gastrointestinal system | 3.34e-39 | 25 |
vermiform appendix | 3.16e-29 | 1 |
caecum | 3.16e-29 | 1 |
midgut | 3.16e-29 | 1 |
lower digestive tract | 2.54e-23 | 5 |
subdivision of digestive tract | 8.49e-09 | 118 |
rectum | 2.61e-08 | 4 |
digestive system | 3.41e-07 | 145 |
digestive tract | 3.41e-07 | 145 |
primitive gut | 3.41e-07 | 145 |
small intestine | 5.38e-07 | 4 |
hindgut | 7.18e-07 | 19 |