FFCP PHASE1:Hg19::chr1:197886421..197886432,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56956 | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |HGNC=14222 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-56bp_to_ENST00000367388_5end | |association_with_transcript=-56bp_to_ENST00000367388_5end | ||
|cluster_id=chr1:197886421..197886432,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_2_at_LHX9_5end | |description=CAGE_peak_2_at_LHX9_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002620!7.77e-34!23;CL:0000242!8.97e-09!2;CL:0000057!4.09e-08!75 | |ontology_enrichment_celltype=CL:0002620!7.77e-34!23;CL:0000242!8.97e-09!2;CL:0000057!4.09e-08!75 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.44e-54;23!CL:0000511;1.13e-11;1!CL:0002625;1.13e-11;1!CL:0000216;1.13e-11;1!CL:0000057;9.58e-07;73 | |ontology_enrichment_celltype_v019=CL:0002620;4.44e-54;23!CL:0000511;1.13e-11;1!CL:0002625;1.13e-11;1!CL:0000216;1.13e-11;1!CL:0000057;9.58e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.55e-54,23;CL:0000057,2.51e-15,76;CL:0000511,1.07e-11,1;CL:0002625,1.07e-11,1;CL:0000216,1.07e-11,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!7.26e-22!5;DOID:450!7.26e-22!5;DOID:66!7.26e-22!5;DOID:423!7.26e-22!5;DOID:0080000!7.26e-22!5;DOID:11722!7.26e-22!5 | |ontology_enrichment_disease=DOID:17!7.26e-22!5;DOID:450!7.26e-22!5;DOID:66!7.26e-22!5;DOID:423!7.26e-22!5;DOID:0080000!7.26e-22!5;DOID:11722!7.26e-22!5 | ||
|ontology_enrichment_disease_v019=DOID:17;1.82e-34;5!DOID:450;1.82e-34;5!DOID:66;1.82e-34;5!DOID:423;1.82e-34;5!DOID:0080000;1.82e-34;5!DOID:11722;1.82e-34;5!DOID:3371;2.63e-12;1!DOID:4549;2.63e-12;1!DOID:5861;2.63e-12;1!DOID:6496;2.63e-12;1!DOID:3093;2.44e-08;11 | |ontology_enrichment_disease_v019=DOID:17;1.82e-34;5!DOID:450;1.82e-34;5!DOID:66;1.82e-34;5!DOID:423;1.82e-34;5!DOID:0080000;1.82e-34;5!DOID:11722;1.82e-34;5!DOID:3371;2.63e-12;1!DOID:4549;2.63e-12;1!DOID:5861;2.63e-12;1!DOID:6496;2.63e-12;1!DOID:3093;2.44e-08;11 | ||
|ontology_enrichment_disease_v019_2=DOID:17,1.82e-34,5;DOID:450,1.82e-34,5;DOID:66,1.82e-34,5;DOID:423,1.82e-34,5;DOID:0080000,1.82e-34,5;DOID:11722,1.82e-34,5;DOID:3371,2.63e-12,1;DOID:4549,2.63e-12,1;DOID:5861,2.63e-12,1;DOID:6496,2.63e-12,1;DOID:3093,2.47e-08,11 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.42e-23!40;UBERON:0002199!1.61e-20!45;UBERON:0002416!1.61e-20!45;UBERON:0000488!1.29e-09!4;UBERON:0003102!9.32e-08!95 | |ontology_enrichment_uberon=UBERON:0002097!1.42e-23!40;UBERON:0002199!1.61e-20!45;UBERON:0002416!1.61e-20!45;UBERON:0000488!1.29e-09!4;UBERON:0003102!9.32e-08!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.67e-22;41!UBERON:0002199;2.51e-16;46!UBERON:0002416;2.51e-16;46!UBERON:0003102;2.13e-14;50!UBERON:0001136;1.13e-11;1!UBERON:0001343;1.13e-11;1!UBERON:0004910;1.13e-11;1!UBERON:0004813;1.13e-11;1 | |ontology_enrichment_uberon_v019=UBERON:0002097;3.67e-22;41!UBERON:0002199;2.51e-16;46!UBERON:0002416;2.51e-16;46!UBERON:0003102;2.13e-14;50!UBERON:0001136;1.13e-11;1!UBERON:0001343;1.13e-11;1!UBERON:0004910;1.13e-11;1!UBERON:0004813;1.13e-11;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.04e-29,41;UBERON:0002199,2.54e-26,46;UBERON:0002416,2.54e-26,46;UBERON:0001136,1.07e-11,1;UBERON:0001343,1.07e-11,1;UBERON:0004910,1.07e-11,1;UBERON:0005154,1.07e-11,1;UBERON:0005295,1.07e-11,1;UBERON:0004813,1.07e-11,1;UBERON:0005297,1.07e-11,1;UBERON:0005294,1.07e-11,1;UBERON:0010141,1.07e-11,1;UBERON:0005891,1.07e-11,1;UBERON:0003102,2.14e-11,99 | |||
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| ||
|short_description=p2@LHX9 | |short_description=p2@LHX9 | ||
}} | }} |
Latest revision as of 13:23, 19 September 2015
Short description: | p2@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LHX9_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -56bp_to_ENST00000367388_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.55e-54 | 23 |
fibroblast | 2.51e-15 | 76 |
androgen binding protein secreting cell | 1.07e-11 | 1 |
seminiferous tubule epithelial cell | 1.07e-11 | 1 |
Sertoli cell | 1.07e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.04e-29 | 41 |
integument | 2.54e-26 | 46 |
integumental system | 2.54e-26 | 46 |
mesothelium | 1.07e-11 | 1 |
seminiferous tubule of testis | 1.07e-11 | 1 |
epithelium of male gonad | 1.07e-11 | 1 |
epithelial cord | 1.07e-11 | 1 |
sex cord | 1.07e-11 | 1 |
seminiferous tubule epithelium | 1.07e-11 | 1 |
testis sex cord | 1.07e-11 | 1 |
genital ridge | 1.07e-11 | 1 |
primitive sex cord of indifferent gonad | 1.07e-11 | 1 |
coelomic epithelium | 1.07e-11 | 1 |
surface structure | 2.14e-11 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.82e-34 | 5 |
myotonic disease | 1.82e-34 | 5 |
muscle tissue disease | 1.82e-34 | 5 |
myopathy | 1.82e-34 | 5 |
muscular disease | 1.82e-34 | 5 |
myotonic dystrophy | 1.82e-34 | 5 |
chondrosarcoma | 2.63e-12 | 1 |
extraosseous chondrosarcoma | 2.63e-12 | 1 |
myxoid chondrosarcoma | 2.63e-12 | 1 |
extraskeletal myxoid chondrosarcoma | 2.63e-12 | 1 |
nervous system cancer | 2.47e-08 | 11 |