FFCP PHASE1:Hg19::chr12:66563786..66563818,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51643,84298 | |EntrezGene=51643,84298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24257,28229 | |HGNC=24257,28229 | ||
|TSSclassifier=strong | |||
|UniProt=E7EQ00,G3V1M2,Q9HC24 | |UniProt=E7EQ00,G3V1M2,Q9HC24 | ||
|association_with_transcript=0bp_to_ENST00000426857,ENST00000535812,ENST00000542724,NM_016056,uc001stc.2,uc001std.2,uc001ste.2,uc001stf.2,uc009zqr.2,uc009zqs.2,uc010ssx.1_5end | |association_with_transcript=0bp_to_ENST00000426857,ENST00000535812,ENST00000542724,NM_016056,uc001stc.2,uc001std.2,uc001ste.2,uc001stf.2,uc009zqr.2,uc009zqs.2,uc010ssx.1_5end | ||
|cluster_id=chr12:66563786..66563818,- | |||
|description=CAGE_peak_2_at_LLPH_5end,CAGE_peak_2_at_TMBIM4_5end | |description=CAGE_peak_2_at_LLPH_5end,CAGE_peak_2_at_TMBIM4_5end | ||
|id=chr12:66563786..66563818,- | |id=chr12:66563786..66563818,- | ||
|ontology_enrichment_celltype=CL:0000048!9.84e-09!430;CL:0002194!1.09e-08!63;CL:0000576!1.09e-08!63;CL:0000040!1.09e-08!63;CL:0000559!1.09e-08!63;CL:0000723!5.35e-08!436;CL:0000766!5.41e-08!76;CL:0002009!9.56e-08!65;CL:0000136!2.01e-07!15;CL:0000055!5.09e-07!180;CL:0000057!6.41e-07!75;CL:0000034!6.56e-07!444;CL:0002320!8.14e-07!365 | |ontology_enrichment_celltype=CL:0000048!9.84e-09!430;CL:0002194!1.09e-08!63;CL:0000576!1.09e-08!63;CL:0000040!1.09e-08!63;CL:0000559!1.09e-08!63;CL:0000723!5.35e-08!436;CL:0000766!5.41e-08!76;CL:0002009!9.56e-08!65;CL:0000136!2.01e-07!15;CL:0000055!5.09e-07!180;CL:0000057!6.41e-07!75;CL:0000034!6.56e-07!444;CL:0002320!8.14e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000134;3.88e-07;55!CL:0000136;5.48e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,2.76e-09,59;CL:0000576,2.76e-09,59;CL:0000040,2.76e-09,59;CL:0000559,2.76e-09,59;CL:0000048,7.38e-09,427;CL:0000473,9.04e-09,48;CL:0000234,9.04e-09,48;CL:0000766,1.90e-08,72;CL:0002009,2.95e-08,61;CL:0000723,4.08e-08,433;CL:0000136,2.01e-07,15;CL:0000057,3.11e-07,76;CL:0000034,5.14e-07,441;CL:0002320,5.51e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.58e-11!448;UBERON:0004120!6.58e-11!448;UBERON:0006603!6.58e-11!448;UBERON:0000468!1.12e-10!659;UBERON:0002204!1.57e-10!167;UBERON:0000467!1.83e-08!625;UBERON:0000480!2.54e-08!626;UBERON:0004765!1.14e-07!101;UBERON:0001434!1.14e-07!101;UBERON:0002384!2.52e-07!375;UBERON:0003081!3.83e-07!216 | |ontology_enrichment_uberon=UBERON:0000926!6.58e-11!448;UBERON:0004120!6.58e-11!448;UBERON:0006603!6.58e-11!448;UBERON:0000468!1.12e-10!659;UBERON:0002204!1.57e-10!167;UBERON:0000467!1.83e-08!625;UBERON:0000480!2.54e-08!626;UBERON:0004765!1.14e-07!101;UBERON:0001434!1.14e-07!101;UBERON:0002384!2.52e-07!375;UBERON:0003081!3.83e-07!216 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.86e-13,315;UBERON:0004120,4.86e-13,315;UBERON:0006603,4.86e-13,315;UBERON:0002204,1.48e-11,167;UBERON:0001434,7.21e-09,100;UBERON:0004765,1.35e-07,90;UBERON:0003081,1.50e-07,203;UBERON:0002384,1.68e-07,371 | |||
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| ||
|short_description=p2@LLPH,p2@TMBIM4 | |short_description=p2@LLPH,p2@TMBIM4 | ||
}} | }} |
Latest revision as of 00:16, 20 September 2015
Short description: | p2@LLPH, p2@TMBIM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LLPH_5end, CAGE_peak_2_at_TMBIM4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426857, ENST00000535812, ENST00000542724, NM_016056, uc001stc.2, uc001std.2, uc001ste.2, uc001stf.2, uc009zqr.2, uc009zqs.2, uc010ssx.1_5end |
EntrezGene: | 51643,84298 |
HGNC: | 28229&submit=Submit 24257, 28229 |
UniProt: | E7EQ00G3V1M2Q9HC24 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 2.76e-09 | 59 |
monocyte | 2.76e-09 | 59 |
monoblast | 2.76e-09 | 59 |
promonocyte | 2.76e-09 | 59 |
multi fate stem cell | 7.38e-09 | 427 |
defensive cell | 9.04e-09 | 48 |
phagocyte | 9.04e-09 | 48 |
myeloid leukocyte | 1.90e-08 | 72 |
macrophage dendritic cell progenitor | 2.95e-08 | 61 |
somatic stem cell | 4.08e-08 | 433 |
fat cell | 2.01e-07 | 15 |
fibroblast | 3.11e-07 | 76 |
stem cell | 5.14e-07 | 441 |
connective tissue cell | 5.51e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.86e-13 | 315 |
mesoderm-derived structure | 4.86e-13 | 315 |
presumptive mesoderm | 4.86e-13 | 315 |
musculoskeletal system | 1.48e-11 | 167 |
skeletal system | 7.21e-09 | 100 |
skeletal element | 1.35e-07 | 90 |
lateral plate mesoderm | 1.50e-07 | 203 |
connective tissue | 1.68e-07 | 371 |