FFCP PHASE1:Hg19::chr7:93204033..93204043,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=799 | |EntrezGene=799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1440 | |HGNC=1440 | ||
|TSSclassifier=strong | |||
|UniProt=F5H605,P30988,A4D1G6 | |UniProt=F5H605,P30988,A4D1G6 | ||
|association_with_transcript=0bp_to_ENST00000359558,ENST00000360249,ENST00000426151,NM_001164737,NM_001742,uc003umw.2_5end | |association_with_transcript=0bp_to_ENST00000359558,ENST00000360249,ENST00000426151,NM_001164737,NM_001742,uc003umw.2_5end | ||
|cluster_id=chr7:93204033..93204043,- | |||
|coexpression_cluster_id=C224 | |coexpression_cluster_id=C224 | ||
|description=CAGE_peak_1_at_CALCR_5end | |description=CAGE_peak_1_at_CALCR_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!6.97e-10!5;CL:0000540!6.03e-08!6;CL:0000031!6.03e-08!6;CL:0000404!6.03e-08!6 | |ontology_enrichment_celltype=CL:0002322!6.97e-10!5;CL:0000540!6.03e-08!6;CL:0000031!6.03e-08!6;CL:0000404!6.03e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002535;3.82e-08;2 | |ontology_enrichment_celltype_v019=CL:0002535;3.82e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,3.82e-08,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:5093!1.01e-07!4;DOID:1612!1.01e-07!4 | |ontology_enrichment_disease=DOID:5093!1.01e-07!4;DOID:1612!1.01e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:5093;1.61e-14;4!DOID:1612;1.61e-14;4!DOID:4468;3.56e-08;2 | |ontology_enrichment_disease_v019=DOID:5093;1.61e-14;4!DOID:1612;1.61e-14;4!DOID:4468;3.56e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,1.61e-14,4;DOID:1612,1.61e-14,4;DOID:4468,3.56e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.81e-15!82;UBERON:0005743!8.08e-14!86;UBERON:0001049!4.05e-13!57;UBERON:0005068!4.05e-13!57;UBERON:0006241!4.05e-13!57;UBERON:0007135!4.05e-13!57;UBERON:0007023!4.06e-13!115;UBERON:0002298!4.29e-13!8;UBERON:0002616!2.02e-12!59;UBERON:0000073!5.94e-12!94;UBERON:0001016!5.94e-12!94;UBERON:0001896!4.94e-10!3;UBERON:0005290!4.94e-10!3;UBERON:0010096!4.94e-10!3;UBERON:0000955!8.81e-10!69;UBERON:0006238!8.81e-10!69;UBERON:0000349!1.18e-09!5;UBERON:0002346!1.21e-09!90;UBERON:0001443!1.77e-09!11;UBERON:0000988!2.16e-09!3;UBERON:0002020!3.13e-09!34;UBERON:0003528!3.13e-09!34;UBERON:0003075!3.31e-09!86;UBERON:0007284!3.31e-09!86;UBERON:0003076!6.43e-09!15;UBERON:0003057!6.43e-09!15;UBERON:0004733!1.79e-08!12;UBERON:0002028!1.79e-08!12;UBERON:0007277!1.79e-08!12;UBERON:0001869!4.18e-08!32;UBERON:0002308!6.24e-08!9;UBERON:0000125!6.24e-08!9;UBERON:0000924!8.45e-08!173;UBERON:0006601!8.45e-08!173;UBERON:0004732!9.18e-08!13;UBERON:0002420!1.04e-07!9;UBERON:0007245!1.04e-07!9;UBERON:0010009!1.04e-07!9;UBERON:0010011!1.04e-07!9;UBERON:0000454!1.04e-07!9;UBERON:0001893!1.62e-07!34;UBERON:0004121!2.09e-07!169;UBERON:0000310!2.42e-07!10;UBERON:0002148!3.05e-07!2;UBERON:0009662!3.05e-07!2;UBERON:0002780!4.19e-07!41;UBERON:0001890!4.19e-07!41;UBERON:0006240!4.19e-07!41;UBERON:0003080!6.98e-07!42;UBERON:0000369!7.32e-07!4;UBERON:0002435!7.32e-07!4;UBERON:0000204!7.32e-07!4;UBERON:0010082!7.32e-07!4;UBERON:0001876!8.40e-07!2 | |ontology_enrichment_uberon=UBERON:0001017!8.81e-15!82;UBERON:0005743!8.08e-14!86;UBERON:0001049!4.05e-13!57;UBERON:0005068!4.05e-13!57;UBERON:0006241!4.05e-13!57;UBERON:0007135!4.05e-13!57;UBERON:0007023!4.06e-13!115;UBERON:0002298!4.29e-13!8;UBERON:0002616!2.02e-12!59;UBERON:0000073!5.94e-12!94;UBERON:0001016!5.94e-12!94;UBERON:0001896!4.94e-10!3;UBERON:0005290!4.94e-10!3;UBERON:0010096!4.94e-10!3;UBERON:0000955!8.81e-10!69;UBERON:0006238!8.81e-10!69;UBERON:0000349!1.18e-09!5;UBERON:0002346!1.21e-09!90;UBERON:0001443!1.77e-09!11;UBERON:0000988!2.16e-09!3;UBERON:0002020!3.13e-09!34;UBERON:0003528!3.13e-09!34;UBERON:0003075!3.31e-09!86;UBERON:0007284!3.31e-09!86;UBERON:0003076!6.43e-09!15;UBERON:0003057!6.43e-09!15;UBERON:0004733!1.79e-08!12;UBERON:0002028!1.79e-08!12;UBERON:0007277!1.79e-08!12;UBERON:0001869!4.18e-08!32;UBERON:0002308!6.24e-08!9;UBERON:0000125!6.24e-08!9;UBERON:0000924!8.45e-08!173;UBERON:0006601!8.45e-08!173;UBERON:0004732!9.18e-08!13;UBERON:0002420!1.04e-07!9;UBERON:0007245!1.04e-07!9;UBERON:0010009!1.04e-07!9;UBERON:0010011!1.04e-07!9;UBERON:0000454!1.04e-07!9;UBERON:0001893!1.62e-07!34;UBERON:0004121!2.09e-07!169;UBERON:0000310!2.42e-07!10;UBERON:0002148!3.05e-07!2;UBERON:0009662!3.05e-07!2;UBERON:0002780!4.19e-07!41;UBERON:0001890!4.19e-07!41;UBERON:0006240!4.19e-07!41;UBERON:0003080!6.98e-07!42;UBERON:0000369!7.32e-07!4;UBERON:0002435!7.32e-07!4;UBERON:0000204!7.32e-07!4;UBERON:0010082!7.32e-07!4;UBERON:0001876!8.40e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002426;9.36e-15;1!UBERON:0003831;9.36e-15;1!UBERON:0003898;9.36e-15;1!UBERON:0004830;9.36e-15;1!UBERON:0003830;9.36e-15;1!UBERON:0005175;9.36e-15;1!UBERON:0001774;9.36e-15;1!UBERON:0001103;9.36e-15;1!UBERON:0001443;1.18e-11;11!UBERON:0002298;1.15e-09;6!UBERON:0006955;3.82e-08;2!UBERON:0004801;3.82e-08;2!UBERON:0001134;4.48e-08;16!UBERON:0002036;4.48e-08;16!UBERON:0005090;5.01e-08;2!UBERON:0001630;5.01e-08;2!UBERON:0002148;7.52e-08;2!UBERON:0006331;7.52e-08;2!UBERON:0009662;7.52e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0002426;9.36e-15;1!UBERON:0003831;9.36e-15;1!UBERON:0003898;9.36e-15;1!UBERON:0004830;9.36e-15;1!UBERON:0003830;9.36e-15;1!UBERON:0005175;9.36e-15;1!UBERON:0001774;9.36e-15;1!UBERON:0001103;9.36e-15;1!UBERON:0001443;1.18e-11;11!UBERON:0002298;1.15e-09;6!UBERON:0006955;3.82e-08;2!UBERON:0004801;3.82e-08;2!UBERON:0001134;4.48e-08;16!UBERON:0002036;4.48e-08;16!UBERON:0005090;5.01e-08;2!UBERON:0001630;5.01e-08;2!UBERON:0002148;7.52e-08;2!UBERON:0006331;7.52e-08;2!UBERON:0009662;7.52e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,9.36e-15,1;UBERON:0003831,9.36e-15,1;UBERON:0003898,9.36e-15,1;UBERON:0004830,9.36e-15,1;UBERON:0003830,9.36e-15,1;UBERON:0005175,9.36e-15,1;UBERON:0001774,9.36e-15,1;UBERON:0001103,9.36e-15,1;UBERON:0010084,9.36e-15,1;UBERON:0001443,1.18e-11,11;UBERON:0002298,1.21e-09,6;UBERON:0006955,3.82e-08,2;UBERON:0004801,3.82e-08,2;UBERON:0005090,5.02e-08,2;UBERON:0001630,5.02e-08,2;UBERON:0002148,6.58e-08,2;UBERON:0006331,6.58e-08,2;UBERON:0009662,6.58e-08,2 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,1.2781333715647,0.518305275076852,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.915927540819,18.8866955660872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15825045334063,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,36.53024843887,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,2.66517388009317,0,0,0,0,0,0,0,0,0,70.0268747002744,0,0,0,0,0,0,0,0,0,4.01288823649394,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0.627865836814451,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0.681017030557878,0.321506296930038,0.137539436597234,0.415440338029185,0,0,0,0,1.89133697518076,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,1.71902382265497,1.53978154095896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0.573409195690071,1.10929051536852,0.993542447062135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,6.95888658802919,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0.26721740526556,0.18378979906969,0,0,0,0,0,0,0.952257725854961,0,0,0,0.0636471582781649,0,0.653150243690884,2.05339980651169,0.134704106029175,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,1.2781333715647,0.518305275076852,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.915927540819,18.8866955660872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15825045334063,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,36.53024843887,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,2.66517388009317,0,0,0,0,0,0,0,0,0,70.0268747002744,0,0,0,0,0,0,0,0,0,4.01288823649394,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0.627865836814451,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0.681017030557878,0.321506296930038,0.137539436597234,0.415440338029185,0,0,0,0,1.89133697518076,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,1.71902382265497,1.53978154095896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0.573409195690071,1.10929051536852,0.993542447062135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,6.95888658802919,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0.26721740526556,0.18378979906969,0,0,0,0,0,0,0.952257725854961,0,0,0,0.0636471582781649,0,0.653150243690884,2.05339980651169,0.134704106029175,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@CALCR | |short_description=p1@CALCR | ||
}} | }} |
Latest revision as of 01:12, 20 September 2015
Short description: | p1@CALCR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALCR_5end |
Coexpression cluster: | C224_clear_serous_pleomorphic_choriocarcinoma_mesothelioma_amniotic_renal |
Association with transcript: | 0bp_to_ENST00000359558, ENST00000360249, ENST00000426151, NM_001164737, NM_001742, uc003umw.2_5end |
EntrezGene: | CALCR |
HGNC: | 1440 |
UniProt: | F5H605P30988A4D1G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 3.82e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 9.36e-15 | 1 |
respiratory system muscle | 9.36e-15 | 1 |
skeletal muscle of trunk | 9.36e-15 | 1 |
respiratory system skeletal muscle | 9.36e-15 | 1 |
thoracic segment muscle | 9.36e-15 | 1 |
chest organ | 9.36e-15 | 1 |
muscle of trunk | 9.36e-15 | 1 |
diaphragm | 9.36e-15 | 1 |
future diaphragm | 9.36e-15 | 1 |
chest | 1.18e-11 | 11 |
brainstem | 1.21e-09 | 6 |
uterine epithelium | 3.82e-08 | 2 |
cervix epithelium | 3.82e-08 | 2 |
muscle structure | 5.02e-08 | 2 |
muscle organ | 5.02e-08 | 2 |
locus ceruleus | 6.58e-08 | 2 |
brainstem nucleus | 6.58e-08 | 2 |
hindbrain nucleus | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.61e-14 | 4 |
breast cancer | 1.61e-14 | 4 |
clear cell adenocarcinoma | 3.56e-08 | 2 |