FFCP PHASE1:Hg19::chr1:206317546..206317580,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1510 | |EntrezGene=1510 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2530 | |HGNC=2530 | ||
|TSSclassifier=strong | |||
|UniProt=B4DNU8 | |UniProt=B4DNU8 | ||
|association_with_transcript=-25bp_to_ENST00000432969_5end | |association_with_transcript=-25bp_to_ENST00000432969_5end | ||
|cluster_id=chr1:206317546..206317580,+ | |||
|coexpression_cluster_id=C238 | |||
|description=CAGE_peak_1_at_CTSE_5end | |description=CAGE_peak_1_at_CTSE_5end | ||
|id=chr1:206317546..206317580,+ | |id=chr1:206317546..206317580,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;5.38e-13;2!CL:0000558;5.38e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,5.73e-13,2;CL:0000765,5.73e-13,2;CL:0000050,5.73e-13,2;CL:0000038,5.73e-13,2;CL:0000558,5.73e-13,2;CL:0000547,5.73e-13,2;CL:0000549,5.73e-13,2;CL:0000550,5.73e-13,2;CL:0000552,5.73e-13,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;4.57e-08;1!UBERON:0001045;1.01e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.27e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,9.83e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.44e-18!115;UBERON:0005409!6.05e-16!35;UBERON:0004119!7.59e-14!169;UBERON:0000925!7.59e-14!169;UBERON:0006595!7.59e-14!169;UBERON:0004921!2.47e-12!129;UBERON:0004185!2.47e-12!129;UBERON:0001007!2.84e-12!155;UBERON:0001555!2.84e-12!155;UBERON:0007026!2.84e-12!155;UBERON:0000945!1.56e-10!8;UBERON:0010039!1.56e-10!8;UBERON:0000160!9.03e-09!27;UBERON:0000077!1.43e-08!130;UBERON:0004177!6.93e-08!7;UBERON:0002106!2.18e-07!3;UBERON:0004854!2.18e-07!3;UBERON:0009034!2.18e-07!3;UBERON:0002095!2.18e-07!3;UBERON:0004782!2.18e-07!3;UBERON:0003281!2.18e-07!3;UBERON:0009664!2.18e-07!3;UBERON:0002296!2.18e-07!3;UBERON:0005602!2.18e-07!3;UBERON:0001179!2.18e-07!3;UBERON:0006293!2.18e-07!3;UBERON:0005177!2.94e-07!107;UBERON:0005172!7.31e-07!55;UBERON:0005173!7.31e-07!55;UBERON:0001041!8.15e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.58e-21;22!UBERON:0000160;1.76e-16;17!UBERON:0004921;4.70e-15;33!UBERON:0002108;2.64e-12;4!UBERON:0002110;1.56e-09;3!UBERON:0002171;8.28e-08;1!UBERON:0006518;8.28e-08;1!UBERON:0008949;8.28e-08;1!UBERON:0000101;8.28e-08;1!UBERON:0002167;8.28e-08;1!UBERON:0001154;1.01e-07;1!UBERON:0001153;1.01e-07;1!UBERON:0009854;1.01e-07;1!UBERON:0009856;2.32e-07;4!UBERON:0002372;2.46e-07;1!UBERON:0001961;2.46e-07;1!UBERON:0001744;2.46e-07;1!UBERON:0001042;2.46e-07;1!UBERON:0001735;2.46e-07;1!UBERON:0001155;6.99e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.25e-18,25;UBERON:0000160,1.72e-16,17;UBERON:0002108,2.64e-12,4;UBERON:0001007,2.40e-10,145;UBERON:0001555,2.40e-10,145;UBERON:0007026,2.40e-10,145;UBERON:0004119,2.95e-10,160;UBERON:0000925,2.95e-10,160;UBERON:0006595,2.95e-10,160;UBERON:0002110,1.59e-09,3;UBERON:0006242,1.59e-09,3;UBERON:0004921,6.11e-09,118;UBERON:0002171,8.28e-08,1;UBERON:0006518,8.28e-08,1;UBERON:0008949,8.28e-08,1;UBERON:0000101,8.28e-08,1;UBERON:0002167,8.28e-08,1;UBERON:0001154,1.01e-07,1;UBERON:0001153,1.01e-07,1;UBERON:0001045,1.01e-07,1;UBERON:0002372,3.17e-07,1;UBERON:0001961,3.17e-07,1;UBERON:0001744,3.17e-07,1;UBERON:0001735,3.17e-07,1;UBERON:0001155,6.57e-07,9 | |||
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| ||
|short_description=p1@CTSE | |short_description=p1@CTSE | ||
}} | }} |
Latest revision as of 04:34, 20 September 2015
Short description: | p1@CTSE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CTSE_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | -25bp_to_ENST00000432969_5end |
EntrezGene: | CTSE |
HGNC: | 2530 |
UniProt: | B4DNU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 5.73e-13 | 2 |
erythroblast | 5.73e-13 | 2 |
megakaryocyte-erythroid progenitor cell | 5.73e-13 | 2 |
erythroid progenitor cell | 5.73e-13 | 2 |
reticulocyte | 5.73e-13 | 2 |
proerythroblast | 5.73e-13 | 2 |
basophilic erythroblast | 5.73e-13 | 2 |
polychromatophilic erythroblast | 5.73e-13 | 2 |
orthochromatic erythroblast | 5.73e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.25e-18 | 25 |
intestine | 1.72e-16 | 17 |
small intestine | 2.64e-12 | 4 |
digestive system | 2.40e-10 | 145 |
digestive tract | 2.40e-10 | 145 |
primitive gut | 2.40e-10 | 145 |
endoderm-derived structure | 2.95e-10 | 160 |
endoderm | 2.95e-10 | 160 |
presumptive endoderm | 2.95e-10 | 160 |
gallbladder | 1.59e-09 | 3 |
gall bladder primordium | 1.59e-09 | 3 |
subdivision of digestive tract | 6.11e-09 | 118 |
lower lobe of right lung | 8.28e-08 | 1 |
right lung lobe | 8.28e-08 | 1 |
lower lobe of lung | 8.28e-08 | 1 |
lobe of lung | 8.28e-08 | 1 |
right lung | 8.28e-08 | 1 |
vermiform appendix | 1.01e-07 | 1 |
caecum | 1.01e-07 | 1 |
midgut | 1.01e-07 | 1 |
tonsil | 3.17e-07 | 1 |
mucosa-associated lymphoid tissue | 3.17e-07 | 1 |
lymphoid tissue | 3.17e-07 | 1 |
tonsillar ring | 3.17e-07 | 1 |
colon | 6.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 9.83e-14 | 2 |