FFCP PHASE1:Hg19::chr17:39678090..39678101,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3866 | |EntrezGene=3866 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6421 | |HGNC=6421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000470004_5end | |association_with_transcript=-19bp_to_ENST00000470004_5end | ||
|cluster_id=chr17:39678090..39678101,- | |||
|coexpression_cluster_id=C449 | |||
|description=CAGE_peak_4_at_KRT15_5end | |description=CAGE_peak_4_at_KRT15_5end | ||
|id=chr17:39678090..39678101,- | |id=chr17:39678090..39678101,- | ||
|ontology_enrichment_celltype=CL:0002076!7.80e-21!43;CL:0000223!1.01e-18!59;CL:0000066!3.59e-18!254;CL:0002251!4.52e-11!21;CL:0002368!1.70e-07!13 | |ontology_enrichment_celltype=CL:0002076!7.80e-21!43;CL:0000223!1.01e-18!59;CL:0000066!3.59e-18!254;CL:0002251!4.52e-11!21;CL:0002368!1.70e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002251;8.40e-18;20!CL:0002327;4.88e-15;4!CL:1000415;1.55e-08;2!CL:0002535;2.31e-08;2!CL:0002076;5.00e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,8.41e-18,20;CL:0002327,5.24e-15,4;CL:0000223,1.40e-08,58;CL:1000415,1.50e-08,2;CL:0002076,1.78e-08,42;CL:0002535,2.48e-08,2;CL:0000066,3.74e-08,253;CL:0000076,6.83e-08,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.99e-25!106;DOID:0050687!5.64e-20!143;DOID:14566!1.64e-17!239;DOID:162!1.91e-17!235;DOID:1749!2.40e-15!14;DOID:299!3.16e-08!25 | |ontology_enrichment_disease=DOID:305!2.99e-25!106;DOID:0050687!5.64e-20!143;DOID:14566!1.64e-17!239;DOID:162!1.91e-17!235;DOID:1749!2.40e-15!14;DOID:299!3.16e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.26e-36;14!DOID:3111;9.28e-16;1!DOID:3603;9.28e-16;1!DOID:4074;2.31e-08;2!DOID:4905;2.31e-08;2!DOID:3498;2.31e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.56e-36,14;DOID:3111,9.99e-16,1;DOID:3603,9.99e-16,1;DOID:305,2.00e-12,106;DOID:0050687,6.29e-09,143;DOID:4074,1.73e-08,2;DOID:4905,1.73e-08,2;DOID:3498,1.73e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000344!1.27e-14!12;UBERON:0004119!2.13e-14!169;UBERON:0000925!2.13e-14!169;UBERON:0006595!2.13e-14!169;UBERON:0001007!1.76e-13!155;UBERON:0001555!1.76e-13!155;UBERON:0007026!1.76e-13!155;UBERON:0004921!3.63e-10!129;UBERON:0004185!3.63e-10!129;UBERON:0000077!3.73e-10!130;UBERON:0003729!6.36e-10!5;UBERON:0002294!1.32e-09!7;UBERON:0001173!1.32e-09!7;UBERON:0004912!1.32e-09!7;UBERON:0000161!1.71e-09!35;UBERON:0003343!7.42e-09!4;UBERON:0004785!7.42e-09!4;UBERON:0001004!8.95e-09!72;UBERON:0005153!1.46e-07!37;UBERON:0000464!3.31e-07!104;UBERON:0000466!3.91e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;7.68e-33;4!UBERON:0004785;7.68e-33;4!UBERON:0000974;3.77e-22;6!UBERON:0000344;6.92e-18;20!UBERON:0000997;5.56e-16;1!UBERON:0005056;5.56e-16;1!UBERON:0004176;5.56e-16;1!UBERON:0001911;4.88e-15;4!UBERON:0003729;1.44e-10;13!UBERON:0006562;2.31e-08;2!UBERON:0006955;2.31e-08;2!UBERON:0004801;2.31e-08;2!UBERON:0000161;2.13e-07;19!UBERON:0000166;2.13e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,5.55e-33,4;UBERON:0004785,5.55e-33,4;UBERON:0000344,6.34e-18,20;UBERON:0000997,5.56e-16,1;UBERON:0005056,5.56e-16,1;UBERON:0001911,5.24e-15,4;UBERON:0005333,5.24e-15,4;UBERON:0008425,5.24e-15,4;UBERON:0005311,5.24e-15,4;UBERON:0000974,1.30e-13,10;UBERON:0003729,1.31e-10,13;UBERON:0003100,1.16e-08,41;UBERON:0006955,2.48e-08,2;UBERON:0004801,2.48e-08,2;UBERON:0000076,5.76e-08,8 | |||
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| ||
|short_description=p4@KRT15 | |short_description=p4@KRT15 | ||
}} | }} |
Latest revision as of 05:52, 20 September 2015
Short description: | p4@KRT15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT15_5end |
Coexpression cluster: | C449_epidermoid_anaplastic_occipital_oral_middle_Wilms_parietal |
Association with transcript: | -19bp_to_ENST00000470004_5end |
EntrezGene: | KRT15 |
HGNC: | 6421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 8.41e-18 | 20 |
mammary gland epithelial cell | 5.24e-15 | 4 |
endodermal cell | 1.40e-08 | 58 |
epithelial cell of gall bladder | 1.50e-08 | 2 |
endo-epithelial cell | 1.78e-08 | 42 |
epithelial cell of cervix | 2.48e-08 | 2 |
epithelial cell | 3.74e-08 | 253 |
squamous epithelial cell | 6.83e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 5.55e-33 | 4 |
respiratory system mucosa | 5.55e-33 | 4 |
mucosa | 6.34e-18 | 20 |
mammalian vulva | 5.56e-16 | 1 |
external female genitalia | 5.56e-16 | 1 |
mammary gland | 5.24e-15 | 4 |
mammary bud | 5.24e-15 | 4 |
mammary ridge | 5.24e-15 | 4 |
mammary placode | 5.24e-15 | 4 |
neck | 1.30e-13 | 10 |
mouth mucosa | 1.31e-10 | 13 |
female organism | 1.16e-08 | 41 |
uterine epithelium | 2.48e-08 | 2 |
cervix epithelium | 2.48e-08 | 2 |
external ectoderm | 5.76e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.56e-36 | 14 |
cystadenocarcinoma | 9.99e-16 | 1 |
mucinous cystadenocarcinoma | 9.99e-16 | 1 |
carcinoma | 2.00e-12 | 106 |
cell type cancer | 6.29e-09 | 143 |
pancreas adenocarcinoma | 1.73e-08 | 2 |
pancreatic carcinoma | 1.73e-08 | 2 |
pancreatic ductal adenocarcinoma | 1.73e-08 | 2 |