FFCP PHASE2:Hg19::chr20:18038486..18038520,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:58495 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:15804 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=58495 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=15804 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q9BRP0 | ||
|association_with_transcript=0bp_to_ENST00000278780,NM_021220,uc002wqi.1_5end | |association_with_transcript=0bp_to_ENST00000278780,NM_021220,uc002wqi.1_5end | ||
|cluster_id=chr20:18038486..18038520,- | |cluster_id=chr20:18038486..18038520,- | ||
Latest revision as of 07:04, 20 September 2015
| Short description: | p2@OVOL2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_OVOL2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000278780, NM_021220, uc002wqi.1_5end |
| EntrezGene: | OVOL2 |
| HGNC: | 15804 |
| UniProt: | Q9BRP0 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@OVOL2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 1.64e-22 | 42 |
| endodermal cell | 8.79e-18 | 58 |
| epithelial cell | 3.83e-17 | 253 |
| respiratory epithelial cell | 4.01e-14 | 13 |
| extraembryonic cell | 1.42e-09 | 19 |
| epithelial cell of tracheobronchial tree | 1.63e-09 | 9 |
| epithelial cell of lower respiratory tract | 1.63e-09 | 9 |
| placental epithelial cell | 7.49e-09 | 3 |
| chorionic membrane mesenchymal stem cell | 2.52e-08 | 3 |
| epithelial cell of prostate | 5.66e-08 | 3 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 3.11e-15 | 160 |
| endoderm | 3.11e-15 | 160 |
| presumptive endoderm | 3.11e-15 | 160 |
| extraembryonic membrane | 1.09e-13 | 14 |
| membranous layer | 1.09e-13 | 14 |
| chorion | 3.78e-13 | 7 |
| internal genitalia | 3.90e-10 | 25 |
| digestive system | 7.45e-10 | 145 |
| digestive tract | 7.45e-10 | 145 |
| primitive gut | 7.45e-10 | 145 |
Showing 1 to 10 of 22 entries
| Ontology term | p-value | n |
|---|---|---|
| adenocarcinoma | 1.18e-11 | 25 |
| carcinoma | 2.80e-10 | 106 |
| cell type cancer | 1.31e-08 | 143 |
Showing 1 to 3 of 3 entries
