FFCP PHASE1:Hg19::chr1:209824463..209824503,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3914 | |EntrezGene=3914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6490 | |HGNC=6490 | ||
|TSSclassifier=strong | |||
|UniProt=Q13751 | |UniProt=Q13751 | ||
|association_with_transcript=175bp_to_ENST00000391911,NM_001017402,uc001hhg.2_5end | |association_with_transcript=175bp_to_ENST00000391911,NM_001017402,uc001hhg.2_5end | ||
|cluster_id=chr1:209824463..209824503,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_LAMB3_5end | |description=CAGE_peak_3_at_LAMB3_5end | ||
|id=chr1:209824463..209824503,- | |id=chr1:209824463..209824503,- | ||
|ontology_enrichment_celltype=CL:0000548!8.27e-16!679;CL:0000004!8.27e-16!679;CL:0000255!8.27e-16!679;CL:0000860!8.75e-16!45;CL:0000012!9.45e-16!682;CL:0002057!3.16e-15!42;CL:0000063!4.38e-15!578;CL:0000066!5.02e-15!254;CL:0002009!4.19e-10!65;CL:0000003!1.36e-09!722;CL:0002194!3.47e-09!63;CL:0000576!3.47e-09!63;CL:0000040!3.47e-09!63;CL:0000559!3.47e-09!63;CL:0002371!4.15e-09!591;CL:0000144!1.17e-08!625;CL:0000766!1.29e-08!76;CL:0000557!5.59e-08!71;CL:0002368!1.77e-07!13;CL:0000220!1.86e-07!246;CL:0002321!3.70e-07!248;CL:0002076!6.50e-07!43;CL:0000839!6.87e-07!70 | |ontology_enrichment_celltype=CL:0000548!8.27e-16!679;CL:0000004!8.27e-16!679;CL:0000255!8.27e-16!679;CL:0000860!8.75e-16!45;CL:0000012!9.45e-16!682;CL:0002057!3.16e-15!42;CL:0000063!4.38e-15!578;CL:0000066!5.02e-15!254;CL:0002009!4.19e-10!65;CL:0000003!1.36e-09!722;CL:0002194!3.47e-09!63;CL:0000576!3.47e-09!63;CL:0000040!3.47e-09!63;CL:0000559!3.47e-09!63;CL:0002371!4.15e-09!591;CL:0000144!1.17e-08!625;CL:0000766!1.29e-08!76;CL:0000557!5.59e-08!71;CL:0002368!1.77e-07!13;CL:0000220!1.86e-07!246;CL:0002321!3.70e-07!248;CL:0002076!6.50e-07!43;CL:0000839!6.87e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.42e-19;33!CL:0002057;9.42e-19;33!CL:0000473;3.72e-12;39!CL:0000234;3.72e-12;39!CL:0000576;1.20e-09;48!CL:0002368;4.95e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.58e-18,42;CL:0002057,1.58e-18,42;CL:0000473,4.86e-15,48;CL:0000234,4.86e-15,48;CL:0002009,9.61e-13,61;CL:0002194,2.56e-11,59;CL:0000576,2.56e-11,59;CL:0000040,2.56e-11,59;CL:0000559,2.56e-11,59;CL:0000557,8.77e-11,67;CL:0000766,3.01e-10,72;CL:0000839,3.08e-09,66;CL:0002368,6.67e-09,13;CL:0000066,6.03e-08,253 | |||
|ontology_enrichment_development_v019=CL:0002057;4.18e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.64e-11!448;UBERON:0004120!4.64e-11!448;UBERON:0006603!4.64e-11!448;UBERON:0003081!3.85e-10!216;UBERON:0000055!6.03e-08!69;UBERON:0001637!8.85e-08!42;UBERON:0003509!8.85e-08!42;UBERON:0004572!8.85e-08!42;UBERON:0003914!5.45e-07!118;UBERON:0004573!5.88e-07!33;UBERON:0004571!5.88e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.12e-07;12!UBERON:0004573;1.48e-07;33!UBERON:0004571;1.48e-07;33!UBERON:0005910;2.85e-07;6!UBERON:0006554;3.97e-07;30!UBERON:0001008;3.97e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.34e-08,90;UBERON:0002371,1.77e-08,76;UBERON:0002405,2.71e-08,93;UBERON:0001474,6.93e-08,82;UBERON:0003081,7.30e-08,203;UBERON:0004573,8.32e-08,33;UBERON:0004571,8.32e-08,33;UBERON:0000055,1.48e-07,68;UBERON:0005910,1.69e-07,6;UBERON:0001434,2.07e-07,100;UBERON:0001637,2.71e-07,42;UBERON:0003509,2.71e-07,42;UBERON:0004572,2.71e-07,42;UBERON:0000365,7.40e-07,5;UBERON:0002204,9.04e-07,167 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,0,0.893922188854576,0,0,3.15859936713415,0.522371256399677,2.7030733015166,2.79120467188971,0.655324116390517,0.791300934685361,0,0,2.6893005858071,1.80808358407193,0.730310090387373,1.46379839637152,0,0,0,0,0.136874425072884,0,0,0.0821005894499457,0,1.57345710739562,0.767658796194425,0.619264493264304,3.67768489791571,1.8072355126695,2.21852406100073,0,0,0,4.9859586767869,1.80490002723128,2.38711957787437,0,0,0,0.872389432677388,0.377875943688809,0.727752183563449,6.74044207026485,2.46700732813095,4.33588919253145,9.49384894663097,5.37937483711111,5.20260905754887,20.3399951634605,20.6555098746824,14.8969135253776,5.08254316765033,2.72906150057846,2.24723484445085,33.6692281607993,25.0324641119353,21.7374622771674,0.659702600373432,0.797854630486527,0.852449501065388,80.9683775773749,59.0080633678785,53.5627134136194,3.26623264833766,3.65038042894141,3.47502151528187,58.7237517554368,60.3975323019606,48.1022828910144,0,0,0,0,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,2.462390822334,1.5905718941022,5.35298357332899,0.0945348171640679,0,0,0.261958150995425,2.91436230634034,0,0,0,0.132957960518865,0,0,0,0,2.58070378531837,2.42998351125316,1.13061588384802,2.09749718104953,0.825354125820202,0.835979866147242,2.58416759169329,0.35576626268671,1.67360306382335,2.01414658554573,0,0,2.20597848207521,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,1.89853131913626,0.183201743930407,7.9068250461638,3.87780264148325,2.61656431285521,0,0,0.264818361626438,0.860509862246441,0,0,0,2.71334303258876,0.311211035399766,0.404132016209064,0.326923806226917,0,0,0,2.49728061464256,0.570471821544449,0.149448680551801,0,0,0,0,0,0,1.18800285728205,0.494533858557114,1.82032272387605,2.87447256726495,0,0,0,0,0,2.40380894250555,0.113432183160021,0.358779271377724,0,0,0,0.103052529238439,0,0,0.675105328965065,0,0,0,0,0.710019185033229,0,0.508681776931463,8.50347753918506,8.45512973831587,4.30206893083506,0,0,0,0.207322110030741,0,0,1.56449532329816,1.28648187638577,1.38134921352481,0,0,0.946454400318751,0.674338760312407,0.723033089650446,0.441175890929576,0.435758888184812,0.474541238222193,0.404493924480493,0.588664395376038,0.769494313892781,0.738155454624648,2.80483547606892,0,0,0,0,0.590789906681404,0,0,0,1.97550513735526,1.1240175325762,0.402115889646523,1.85176890317059,0,0,0,0.115930404975077,0,1.29929802984966,0.925971025153221,0.380508304469197,0,0,0.246217006087397,0.234004265139238,0.297262324577456,4.68669169933885,9.91094556373271,5.10390350072591,7.25424033893071,2.90633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,1.690605505112,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.602878754119172,0.871533458600294,0.399891964728228,0,0,0,1.4377491329495,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0.178428988797162,0.630809660135739,1.40569697991256,0.300946099727719,0,0,0,0,0.781952530212746,0,0.686286847621712,0.206768026122887,0.215714200818617,0.320182673410333,0,0,0.30239029332968,0,0,0,0,0,0,0,1.3878872442239,0.355123450626254,0.246381468041427,2.59627214591811,0,0,5.81468763879526,0.368323955743585,0,0,0.131124414959424,1.35359883872224,0.693138033939733,0.784349769176855,0,2.00548094896464,2.27466768141793,3.74206151608334,0.215915916102139,1.54227252690289,0,0,3.05851527654046,9.14183609821597,0.671624264166535,0,0,0,0,0,0.721287081534056,0.0915694648183434,0.082509499920588,2.29706215198469,0,0,0,0,0,0,0,0,0,0.0890320356467374,5.61968712227326,3.45942121257191,2.55225424989168,1.0115778085555,0,0,2.0911118104818,3.08033580176089,1.59691809095107,0.869932992075073,1.11194531462352,1.14499909393593,0,0,0,0,0,1.59101623962968,7.06453776179307,0,0,0,0.606547444719948,0,2.52755073743389,0,4.6305563029944,1.05650146756755,0,0,0,0,2.65375590096488,3.06915619677634,0,0.655894752046633,1.01455188481352,1.239293992399,0,0,0,0.35667105148125,0.354761064070598,0.844430541190656,0.987884678879706,0,0,2.11688647996127,0.670302275535787,1.08890984861323,0.376575203107117,6.88808596273968,1.68471475667626,3.54744122829341,4.59446800413919,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0.568272293612826,0.23874448473769,0,0.307160702099232,0,0,13.1344271927029,0,0,0,0.828851746593443,0,0.306806047506464,0.492339221844278,0,2.15684042753584,0.895105873378046,0,0.197286811273867,0,0,0,0,0,0,0,0,0.455173793141999,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,1.59518878185802,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,5.4859496777287,2.12202650606892,0,0,0,0,0,3.26173241548684,0.494255755786011,0.313265848516366,0,0,0,0,0,0,0.394584402849391,0,0,0.379119477770928,74.1094457713448,0.518440956986236,0,2.64793564700399,0,0,0.2846095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| ||
|short_description=p3@LAMB3 | |short_description=p3@LAMB3 | ||
}} | }} |
Latest revision as of 19:41, 24 September 2015
Short description: | p3@LAMB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMB3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 175bp_to_ENST00000391911, NM_001017402, uc001hhg.2_5end |
EntrezGene: | LAMB3 |
HGNC: | 6490 |
UniProt: | Q13751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.58e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-18 | 42 |
defensive cell | 4.86e-15 | 48 |
phagocyte | 4.86e-15 | 48 |
macrophage dendritic cell progenitor | 9.61e-13 | 61 |
monopoietic cell | 2.56e-11 | 59 |
monocyte | 2.56e-11 | 59 |
monoblast | 2.56e-11 | 59 |
promonocyte | 2.56e-11 | 59 |
granulocyte monocyte progenitor cell | 8.77e-11 | 67 |
myeloid leukocyte | 3.01e-10 | 72 |
myeloid lineage restricted progenitor cell | 3.08e-09 | 66 |
respiratory epithelial cell | 6.67e-09 | 13 |
epithelial cell | 6.03e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.34e-08 | 90 |
bone marrow | 1.77e-08 | 76 |
immune system | 2.71e-08 | 93 |
bone element | 6.93e-08 | 82 |
lateral plate mesoderm | 7.30e-08 | 203 |
systemic artery | 8.32e-08 | 33 |
systemic arterial system | 8.32e-08 | 33 |
vessel | 1.48e-07 | 68 |
transitional epithelium | 1.69e-07 | 6 |
skeletal system | 2.07e-07 | 100 |
artery | 2.71e-07 | 42 |
arterial blood vessel | 2.71e-07 | 42 |
arterial system | 2.71e-07 | 42 |
urothelium | 7.40e-07 | 5 |
musculoskeletal system | 9.04e-07 | 167 |