FFCP PHASE1:Hg19::chr6:133008504..133008532,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8876 | |EntrezGene=8876 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12705 | |HGNC=12705 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003qdn.2_5end | |association_with_transcript=0bp_to_uc003qdn.2_5end | ||
|cluster_id=chr6:133008504..133008532,- | |||
|coexpression_cluster_id=C2842 | |coexpression_cluster_id=C2842 | ||
|description=CAGE_peak_2_at_VNN1_5end | |description=CAGE_peak_2_at_VNN1_5end | ||
|id=chr6:133008504..133008532,- | |id=chr6:133008504..133008532,- | ||
|ontology_enrichment_celltype=CL:0000066!2.43e-09!254;CL:0000220!7.75e-08!246;CL:0002321!1.31e-07!248;CL:0000076!4.71e-07!62 | |ontology_enrichment_celltype=CL:0000066!2.43e-09!254;CL:0000220!7.75e-08!246;CL:0002321!1.31e-07!248;CL:0000076!4.71e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002619;9.01e-10;3!CL:0002621;1.60e-09;3!CL:0002166;5.31e-09;3!CL:0000077;5.28e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.06e-10,253;CL:0002619,9.16e-10,3;CL:0002621,1.65e-09,3;CL:0002166,5.18e-09,3;CL:0000077,5.70e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.05e-10!14;DOID:120!5.47e-07!27 | |ontology_enrichment_disease=DOID:2394!1.05e-10!14;DOID:120!5.47e-07!27 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.85e-21;14!DOID:120;2.01e-11;27!DOID:193;1.91e-10;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.64e-21,14;DOID:120,1.67e-11,27;DOID:193,1.61e-10,29 | |||
|ontology_enrichment_uberon=UBERON:0000992!3.06e-07!13;UBERON:0002100!3.08e-07!216;UBERON:0003104!5.81e-07!238;UBERON:0009142!5.81e-07!238 | |ontology_enrichment_uberon=UBERON:0000992!3.06e-07!13;UBERON:0002100!3.08e-07!216;UBERON:0003104!5.81e-07!238;UBERON:0009142!5.81e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0000992;2.20e-11;13!UBERON:0001949;1.60e-09;3!UBERON:0002294;1.66e-09;7!UBERON:0001173;1.66e-09;7!UBERON:0002118;2.35e-08;5!UBERON:0001708;7.91e-07;4!UBERON:0008895;7.91e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,1.61e-11,13;UBERON:0001949,1.65e-09,3;UBERON:0002118,1.59e-08,5;UBERON:0004176,8.11e-08,22;UBERON:0002294,2.46e-07,9;UBERON:0001173,2.46e-07,9;UBERON:0004912,2.46e-07,9;UBERON:0001708,7.77e-07,4;UBERON:0008895,7.77e-07,4 | |||
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| ||
|short_description=p2@VNN1 | |short_description=p2@VNN1 | ||
}} | }} |
Latest revision as of 19:57, 24 September 2015
Short description: | p2@VNN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VNN1_5end |
Coexpression cluster: | C2842_tubular_Mesothelial_CD14_giant_mesenchymal_mesothelioma_Gingival |
Association with transcript: | 0bp_to_uc003qdn.2_5end |
EntrezGene: | VNN1 |
HGNC: | 12705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.06e-10 | 253 |
adult endothelial progenitor cell | 9.16e-10 | 3 |
gingival epithelial cell | 1.65e-09 | 3 |
epithelial cell of Malassez | 5.18e-09 | 3 |
mesothelial cell | 5.70e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
female gonad | 1.61e-11 | 13 |
gingival epithelium | 1.65e-09 | 3 |
right ovary | 1.59e-08 | 5 |
external genitalia | 8.11e-08 | 22 |
biliary system | 2.46e-07 | 9 |
biliary tree | 2.46e-07 | 9 |
biliary bud | 2.46e-07 | 9 |
jaw skeleton | 7.77e-07 | 4 |
splanchnocranium | 7.77e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.64e-21 | 14 |
female reproductive organ cancer | 1.67e-11 | 27 |
reproductive organ cancer | 1.61e-10 | 29 |