FFCP PHASE1:Hg19::chr9:129376201..129376225,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:129376201..129376225,+ to FFCP PHASE1:Hg19::chr9:129376201..129376225,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4010 | |EntrezGene=4010 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6654 | |HGNC=6654 | ||
|TSSclassifier=strong | |||
|UniProt=F8W7W6,O60663,F8VYP0,B7ZLH2,Q6ISE0 | |UniProt=F8W7W6,O60663,F8VYP0,B7ZLH2,Q6ISE0 | ||
|association_with_transcript=-496bp_to_ENST00000355497,ENST00000373474,ENST00000425646,ENST00000526117,NM_001174146,NM_001174147,NM_002316_5end | |||
|cluster_id=chr9:129376201..129376225,+ | |||
|coexpression_cluster_id=C4801 | |||
|description=CAGE_peak_1_at_LMX1B_5end | |||
|id=chr9:129376201..129376225,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.96e-13!254 | |||
|ontology_enrichment_celltype_v019=CL:0002327;5.95e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.31e-10,253;CL:0002327,5.77e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.29e-25!143;DOID:305!8.34e-20!106;DOID:162!6.31e-16!235;DOID:14566!1.70e-15!239;DOID:7!1.13e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.21e-08;4!DOID:1612;1.21e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.68e-17,143;DOID:305,5.71e-13,106;DOID:162,7.21e-13,235;DOID:14566,2.97e-12,239;DOID:5093,1.36e-08,4;DOID:1612,1.36e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000489!1.46e-07!32;UBERON:0005157!2.29e-07!51;UBERON:0005177!2.33e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;5.95e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,5.77e-08,4;UBERON:0005333,5.77e-08,4;UBERON:0008425,5.77e-08,4;UBERON:0005311,5.77e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.50668955317945,1.01392563272577,0,0.486634870302636,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,3.04617861383936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,6.14255015911485,0,0,0,0.193260853163297,0,0,0.121973706129595,1.06023814657188,0.813357600086629,1.86589899027667,0.504641701751257,0.36497735907583,0,0.643240938192885,0,0,0,0.118306800039844,0,0.723033089650446,0,0.217879444092406,0.474541238222193,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,2.09080345523293,0.686271241194102,4.60951198716227,1.1240175325762,0.603173834469785,0,3.58389135841357,9.35941306751621,0,0,0.117408694235822,0,0,0,24.4963363367375,14.5942647556128,0,0,0,0,0,0,2.95543124919399,7.55648240136301,9.20118429996507,0,0,0,0.144119953416961,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0,0,0,0,1.35359883872224,0.539107359730903,3.92174884588428,0,0.105551628892876,0,0,0.215915916102139,3.08454505380579,0.541892875087706,1.50506932156456,0,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0.206082023295445,0.183138929636687,0,1.14853107599234,4.55042172225565,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,1.05553817648832,0.987884678879706,16.3173464719257,36.0432761852332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6438237528946,15.3996776842137,1.22520107990516,0,0,0,0.797131363644112,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53620382154229,2.68411329470899,1.83534055883099,0,0,0,0,0,0,0,0.73254089635947,2.54857095673978,0,6.5351313765475,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0.503865495708552,0,0,0,0,2.14825409610731,0,0.197286811273867,0,0,0,0,0,17.1882322316254,4.023159999825,5.07499702804355,0.910347586283997,0,1.18193840883968,0.344743373241465,4.08246458736556,1.21537496453305,0,0,0,0,0,0.219385397153973,0,4.1827123283581,0.0769502585037971,0.113942055847001,4.15015027898508,1.25660702173681,2.39024218228418,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,5.37141671448975,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,1.9566461893209,4.85560759068186,0,0,0,2.84339608328196,7.81681780955361,5.91022690964309,9.30515421790059,3.30991955875499,6.59259128655173,7.16834578637753,0,3.46686682532847,1.04135843001079,1.46988596121566,1.21882889212564,0,1.89184635718778,0,0,0,0,4.32455020788351,3.84167259326905,2.74083849293502,0,0,2.15106521008283,0.160317640503067,0.426905989478705,2.19790570540343,6.19588793762656,3.43609788497747,10.8104848653038,0,2.23654564017779,2.12124631155116,1.35904206073614,1.882851233622,0,0,0,0.136905378891993,0,0,0,2.23425921017803,1.3749625440701,2.87149209830726,2.1964690054889,0,0.223171457441873,0.470284307407084,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,1.37798474120648,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,5.36695500158826,0.157611414598396,4.30127622706984,0,1.25501137532991,0.959575986597226,0,1.32418394073086,1.017074150619,0.542999601753713,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0.517131825446202,1.85125642439766,0.855434189421647,0,0.106787412567695,0.471612915298998,0,0,0,0,3.83004754662109,0,0.2506898940227,0,0,0.314108192500469,0,0,0,1.14681839138014,0.110929051536852,0.310482014706917,0.276697269872462,0,1.21319294033318,0.570930667089935,0,1.87333962322753,1.7390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0.857766365499703,4.17590867144339,0,0,0,0.179088841081487,3.39681591877069,0,0,1.54331230616732,0,0.76872455576384,3.79973375904318,0.303859956177382,0,0,0,0,0.327609848846413,0,0,0,0.640150378164845,0,0,0,0,0,0,0,1.57265941855896,0,0,1.70059936081346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.49627223605743,5.30863755064832,0.550285795565037,0.693153996902029,0,1.3807198521202,1.79024599904647,0.0752103283492573,0,0.781514011233092,0,0,0.591424344868181,0,0,0,0,0,20.8337951405729,0,12.3109871051734,1.53314913167514,0,0.672567444437648,0,0.455324382702595,0,0,0,0,0,0.590969204419841,0.111231401892069,0.156986185701028,0,0.840816489941367,0,0,0,6.36141243172241,0,0.697448552208751,0.695433089210318,0,0,0,0.691259661814092,12.4765934057881,0,0,0,0.9164274741762,0,0,1.23040974977572,0,1.5849330247695,0,0.410651227424988,3.4794432940146,0.485710993059139,1.16969731731053,0.795803100645473,4.1622031772149,0,0,5.43466236840025,0.231522474323834,0.437119121007915,0,0,6.83461986594715,0.981542335574726,0.297046400327086,2.5359343655004,0,0,0,0,4.46384846514144,0,0,0,13.3031492187317,0.143339583151451,4.25983217921598,0,0,0.5290268405154,0,2.31087814315709,0,0,0,7.60191006068622,0.305966489225945,2.13773924212448,3.30821638325442,0.250707539292375,1.28823786971007,1.87574891109325,0,0,0.639701945702943,0,0,0,0,0.509177266225319,0.202117188958219,0.217716747896961,0,0,0.502055437748735,0,0,0,0,0,2.34640942403454,0,0,0,1.00636896795513,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.50668955317945,1.01392563272577,0,0.486634870302636,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,3.04617861383936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,6.14255015911485,0,0,0,0.193260853163297,0,0,0.121973706129595,1.06023814657188,0.813357600086629,1.86589899027667,0.504641701751257,0.36497735907583,0,0.643240938192885,0,0,0,0.118306800039844,0,0.723033089650446,0,0.217879444092406,0.474541238222193,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,2.09080345523293,0.686271241194102,4.60951198716227,1.1240175325762,0.603173834469785,0,3.58389135841357,9.35941306751621,0,0,0.117408694235822,0,0,0,24.4963363367375,14.5942647556128,0,0,0,0,0,0,2.95543124919399,7.55648240136301,9.20118429996507,0,0,0,0.144119953416961,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0,0,0,0,1.35359883872224,0.539107359730903,3.92174884588428,0,0.105551628892876,0,0,0.215915916102139,3.08454505380579,0.541892875087706,1.50506932156456,0,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0.206082023295445,0.183138929636687,0,1.14853107599234,4.55042172225565,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,1.05553817648832,0.987884678879706,16.3173464719257,36.0432761852332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6438237528946,15.3996776842137,1.22520107990516,0,0,0,0.797131363644112,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53620382154229,2.68411329470899,1.83534055883099,0,0,0,0,0,0,0,0.73254089635947,2.54857095673978,0,6.5351313765475,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0.503865495708552,0,0,0,0,2.14825409610731,0,0.197286811273867,0,0,0,0,0,17.1882322316254,4.023159999825,5.07499702804355,0.910347586283997,0,1.18193840883968,0.344743373241465,4.08246458736556,1.21537496453305,0,0,0,0,0,0.219385397153973,0,4.1827123283581,0.0769502585037971,0.113942055847001,4.15015027898508,1.25660702173681,2.39024218228418,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,5.37141671448975,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,1.9566461893209,4.85560759068186,0,0,0,2.84339608328196,7.81681780955361,5.91022690964309,9.30515421790059,3.30991955875499,6.59259128655173,7.16834578637753,0,3.46686682532847,1.04135843001079,1.46988596121566,1.21882889212564,0,1.89184635718778,0,0,0,0,4.32455020788351,3.84167259326905,2.74083849293502,0,0,2.15106521008283,0.160317640503067,0.426905989478705,2.19790570540343,6.19588793762656,3.43609788497747,10.8104848653038,0,2.23654564017779,2.12124631155116,1.35904206073614,1.882851233622,0,0,0,0.136905378891993,0,0,0,2.23425921017803,1.3749625440701,2.87149209830726,2.1964690054889,0,0.223171457441873,0.470284307407084,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,1.37798474120648,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,5.36695500158826,0.157611414598396,4.30127622706984,0,1.25501137532991,0.959575986597226,0,1.32418394073086,1.017074150619,0.542999601753713,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0.517131825446202,1.85125642439766,0.855434189421647,0,0.106787412567695,0.471612915298998,0,0,0,0,3.83004754662109,0,0.2506898940227,0,0,0.314108192500469,0,0,0,1.14681839138014,0.110929051536852,0.310482014706917,0.276697269872462,0,1.21319294033318,0.570930667089935,0,1.87333962322753,1.7390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0.857766365499703,4.17590867144339,0,0,0,0.179088841081487,3.39681591877069,0,0,1.54331230616732,0,0.76872455576384,3.79973375904318,0.303859956177382,0,0,0,0,0.327609848846413,0,0,0,0.640150378164845,0,0,0,0,0,0,0,1.57265941855896,0,0,1.70059936081346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.49627223605743,5.30863755064832,0.550285795565037,0.693153996902029,0,1.3807198521202,1.79024599904647,0.0752103283492573,0,0.781514011233092,0,0,0.591424344868181,0,0,0,0,0,20.8337951405729,0,12.3109871051734,1.53314913167514,0,0.672567444437648,0,0.455324382702595,0,0,0,0,0,0.590969204419841,0.111231401892069,0.156986185701028,0,0.840816489941367,0,0,0,6.36141243172241,0,0.697448552208751,0.695433089210318,0,0,0,0.691259661814092,12.4765934057881,0,0,0,0.9164274741762,0,0,1.23040974977572,0,1.5849330247695,0,0.410651227424988,3.4794432940146,0.485710993059139,1.16969731731053,0.795803100645473,4.1622031772149,0,0,5.43466236840025,0.231522474323834,0.437119121007915,0,0,6.83461986594715,0.981542335574726,0.297046400327086,2.5359343655004,0,0,0,0,4.46384846514144,0,0,0,13.3031492187317,0.143339583151451,4.25983217921598,0,0,0.5290268405154,0,2.31087814315709,0,0,0,7.60191006068622,0.305966489225945,2.13773924212448,3.30821638325442,0.250707539292375,1.28823786971007,1.87574891109325,0,0,0.639701945702943,0,0,0,0,0.509177266225319,0.202117188958219,0.217716747896961,0,0,0.502055437748735,0,0,0,0,0,2.34640942403454,0,0,0,1.00636896795513,0 | ||
|short_description=p1@LMX1B | |||
}} | }} |
Latest revision as of 03:07, 25 September 2015
Short description: | p1@LMX1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMX1B_5end |
Coexpression cluster: | C4801_Trabecular_Wilms_parotid_MCF7_salivary_breast_submaxillary |
Association with transcript: | -496bp_to_ENST00000355497, ENST00000373474, ENST00000425646, ENST00000526117, NM_001174146, NM_001174147, NM_002316_5end |
EntrezGene: | LMX1B |
HGNC: | 6654 |
UniProt: | F8W7W6O60663F8VYP0B7ZLH2Q6ISE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.31e-10 | 253 |
mammary gland epithelial cell | 5.77e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 5.77e-08 | 4 |
mammary bud | 5.77e-08 | 4 |
mammary ridge | 5.77e-08 | 4 |
mammary placode | 5.77e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.68e-17 | 143 |
carcinoma | 5.71e-13 | 106 |
cancer | 7.21e-13 | 235 |
disease of cellular proliferation | 2.97e-12 | 239 |
thoracic cancer | 1.36e-08 | 4 |
breast cancer | 1.36e-08 | 4 |