FFCP PHASE1:Hg19::chr9:130478352..130478378,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=158248 | |EntrezGene=158248 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26536 | |HGNC=26536 | ||
|TSSclassifier=strong | |||
|UniProt=B4DYG4,Q8NEE8 | |UniProt=B4DYG4,Q8NEE8 | ||
|association_with_transcript=0bp_to_ENST00000393748,NM_144965,uc004brq.1,uc011mai.1_5end | |association_with_transcript=0bp_to_ENST00000393748,NM_144965,uc004brq.1,uc011mai.1_5end | ||
|cluster_id=chr9:130478352..130478378,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_TTC16_5end | |description=CAGE_peak_3_at_TTC16_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | |ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.11e-11!57;UBERON:0005068!6.11e-11!57;UBERON:0006241!6.11e-11!57;UBERON:0007135!6.11e-11!57;UBERON:0002616!2.07e-10!59;UBERON:0000369!2.62e-10!4;UBERON:0002435!2.62e-10!4;UBERON:0000204!2.62e-10!4;UBERON:0010082!2.62e-10!4;UBERON:0007023!7.56e-10!115;UBERON:0002308!2.78e-09!9;UBERON:0000125!2.78e-09!9;UBERON:0000955!4.85e-09!69;UBERON:0006238!4.85e-09!69;UBERON:0000153!3.53e-08!129;UBERON:0007811!3.53e-08!129;UBERON:0005383!3.78e-08!3;UBERON:0005382!3.78e-08!3;UBERON:0005743!4.77e-08!86;UBERON:0001017!9.69e-08!82;UBERON:0002780!1.14e-07!41;UBERON:0001890!1.14e-07!41;UBERON:0006240!1.14e-07!41;UBERON:0000073!1.24e-07!94;UBERON:0001016!1.24e-07!94;UBERON:0000988!1.44e-07!3;UBERON:0003080!2.02e-07!42;UBERON:0000033!2.94e-07!123;UBERON:0002298!3.92e-07!8;UBERON:0001893!5.59e-07!34;UBERON:0002020!5.86e-07!34;UBERON:0003528!5.86e-07!34;UBERON:0002346!7.70e-07!90 | |ontology_enrichment_uberon=UBERON:0001049!6.11e-11!57;UBERON:0005068!6.11e-11!57;UBERON:0006241!6.11e-11!57;UBERON:0007135!6.11e-11!57;UBERON:0002616!2.07e-10!59;UBERON:0000369!2.62e-10!4;UBERON:0002435!2.62e-10!4;UBERON:0000204!2.62e-10!4;UBERON:0010082!2.62e-10!4;UBERON:0007023!7.56e-10!115;UBERON:0002308!2.78e-09!9;UBERON:0000125!2.78e-09!9;UBERON:0000955!4.85e-09!69;UBERON:0006238!4.85e-09!69;UBERON:0000153!3.53e-08!129;UBERON:0007811!3.53e-08!129;UBERON:0005383!3.78e-08!3;UBERON:0005382!3.78e-08!3;UBERON:0005743!4.77e-08!86;UBERON:0001017!9.69e-08!82;UBERON:0002780!1.14e-07!41;UBERON:0001890!1.14e-07!41;UBERON:0006240!1.14e-07!41;UBERON:0000073!1.24e-07!94;UBERON:0001016!1.24e-07!94;UBERON:0000988!1.44e-07!3;UBERON:0003080!2.02e-07!42;UBERON:0000033!2.94e-07!123;UBERON:0002298!3.92e-07!8;UBERON:0001893!5.59e-07!34;UBERON:0002020!5.86e-07!34;UBERON:0003528!5.86e-07!34;UBERON:0002346!7.70e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0003127;5.70e-21;2!UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0003126;6.04e-07;7!UBERON:0001005;6.04e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0003127;5.70e-21;2!UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0003126;6.04e-07;7!UBERON:0001005;6.04e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,5.70e-21,2;UBERON:0000473,6.64e-21,8;UBERON:0003135,1.62e-15,11;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0003126,6.04e-07,7;UBERON:0001005,6.04e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,6.09052701064364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0.614321404198464,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0,0.34945333648406,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0.704815022316672,0.747511887973863,1.57204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.554645257684261,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0.41023272848151,0,0,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.91064876540519,0,0,0,0.135939465953663,0.0657727735628491,0.118193840883968,0,0,0.157115589916002,0,0,0,0,0,0,0.348724276104376,0,0,0.207216164163037,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,10.3059029576806,15.8098836792145,0,0.103432995861895,0.426467963801962,0.476128862927481,0,0,0,0,0.202117188958219,0,0,0,2.00822175099494,0.332660356546013,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,6.09052701064364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0.614321404198464,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0,0.34945333648406,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0.704815022316672,0.747511887973863,1.57204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.554645257684261,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0.41023272848151,0,0,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.91064876540519,0,0,0,0.135939465953663,0.0657727735628491,0.118193840883968,0,0,0.157115589916002,0,0,0,0,0,0,0.348724276104376,0,0,0.207216164163037,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,10.3059029576806,15.8098836792145,0,0.103432995861895,0.426467963801962,0.476128862927481,0,0,0,0,0.202117188958219,0,0,0,2.00822175099494,0.332660356546013,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | ||
|short_description=p3@TTC16 | |short_description=p3@TTC16 | ||
}} | }} |
Latest revision as of 04:54, 25 September 2015
Short description: | p3@TTC16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TTC16_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000393748, NM_144965, uc004brq.1, uc011mai.1_5end |
EntrezGene: | TTC16 |
HGNC: | 26536 |
UniProt: | B4DYG4Q8NEE8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 5.70e-21 | 2 |
testis | 6.64e-21 | 8 |
male reproductive organ | 1.62e-15 | 11 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
trachea | 6.04e-07 | 7 |
respiratory airway | 6.04e-07 | 7 |