FFCP PHASE1:Mm9::chr8:128434239..128434250,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:128434239..128434250,+
|short_description=p2@BC021891
|description=CAGE_peak_2_at_BC021891_5end
|association_with_transcript=-99bp_to_ENSMUST00000034316,NM...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=234878 | |EntrezGene=234878 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2550 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VDG6 | |UniProt=Q8VDG6 | ||
|association_with_transcript=-99bp_to_ENSMUST00000034316,NM_145608,uc009nyq.1_5end | |||
|cluster_id=chr8:128434239..128434250,+ | |||
|description=CAGE_peak_2_at_BC021891_5end | |||
|id=chr8:128434239..128434250,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,5.17e-13,9;CL:0002251,5.17e-13,9;CL:0002250,1.93e-11,3;CL:0002076,1.49e-07,15;CL:0000223,2.65e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.57e-19!43;UBERON:0005409!2.16e-15!59;UBERON:0000991!1.55e-12!18;UBERON:0005564!1.55e-12!18;UBERON:0003135!8.12e-12!15;UBERON:0004176!8.23e-12!17;UBERON:0009196!8.23e-12!17;UBERON:0009117!8.23e-12!17;UBERON:0003886!3.46e-11!38;UBERON:0000473!4.63e-11!14;UBERON:0003133!5.41e-11!24;UBERON:0003101!1.05e-10!16;UBERON:0000079!1.05e-10!16;UBERON:0005156!1.21e-10!26;UBERON:0000990!1.21e-10!26;UBERON:0002553!1.23e-10!39;UBERON:0000464!1.34e-10!57;UBERON:0000344!1.51e-10!15;UBERON:0002323!1.56e-10!37;UBERON:0004458!1.56e-10!37;UBERON:0001242!1.73e-09!13;UBERON:0000060!1.73e-09!13;UBERON:0001262!1.73e-09!13;UBERON:0004786!1.73e-09!13;UBERON:0000466!3.47e-08!79;UBERON:0002108!3.90e-07!16;UBERON:0000485!4.87e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,2.60e-20,15;UBERON:0003101,6.26e-19,16;UBERON:0000079,6.26e-19,16;UBERON:0000473,5.86e-18,14;UBERON:0001242,3.46e-15,13;UBERON:0001262,3.46e-15,13;UBERON:0004786,3.46e-15,13;UBERON:0004176,1.62e-14,17;UBERON:0009196,1.62e-14,17;UBERON:0009117,1.62e-14,17;UBERON:0000991,1.26e-13,18;UBERON:0005564,1.26e-13,18;UBERON:0003350,5.17e-13,9;UBERON:0004808,5.17e-13,9;UBERON:0001277,5.17e-13,9;UBERON:0000344,5.34e-13,15;UBERON:0000160,5.62e-13,31;UBERON:0003133,5.12e-12,24;UBERON:0005156,5.92e-11,26;UBERON:0000990,5.92e-11,26;UBERON:0000485,1.56e-10,11;UBERON:0003886,4.39e-10,38;UBERON:0002553,9.11e-10,39;UBERON:0005409,3.37e-09,47;UBERON:0002323,9.33e-09,37;UBERON:0004458,9.33e-09,37;UBERON:0004923,1.16e-07,24 | |||
|phase1_expression=0.160148847104794,0.697950815278722,0,2.41971369045464,1.00179145989269,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.47997726838022,0.68822784320151,0,0,0.430942465371778,0.950117097281869,1.00812051903972,0.665191531965914,0,0,0,2.59966457776147,3.32469290716985,4.28755648150975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.587943535678524,0,0,0,0,0,0,0,0,0,0.209446706813455,0.766371165625774,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0,0,1.01839363850316,0.248813941220186,1.0108910337347,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0,0,0.351902248327898,0,0,0.348252166522167,0,0.995171334092466,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,1.65209391491899,1.58670339998127,0,0,0.257734922644187,0.605050573870028,0.22237804384487,0.570676878337677,1.42358718463353,1.15289268306808,0.502670417600539,0.795825888164603,0.38992817423824,0.898819408654221,0.216138049874694,0.995706366271836,0,0.456994050438915,0,1.01825663922657,0.387904974335251,0.841629838683823,0.948548056863859,0.590440591918409,0.627994911365499,0.123397163921801,0.296452627087149,0,0,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0.252578877947112,0.179397413521912,1.4473305640901,0,0.189491411770485,0.488894929326078,0.678980343100753,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0.491764273019036,0.827810238914197,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.712262414669021,0.162886959353576,0.329940245945071,0,0.728341908464944,0.302323556964751,0.754420319023592,0.885905678642318,0.614870295887855,0.516856586336442,0,0.712994756769443,1.26414703174326,0,1.03135543248187,0.680879211507576,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0,0,0,0,0,1.45740418314925,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.743881101528023,1.04702376793612,0.518459893167171,0,0.56369293868419,1.64468200648377,1.15820943319968,1.36115831840833,2.58319646955462,2.36538575687089,3.16864544343536,5.59878854828985,1.46803082195995,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0.505394423527595,0.25347929989024,0,0,0.0640251524048693,0.114870937911227,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0.409231043169689,0,0,0,0,0,0,0,0.231867835620421 | |phase1_expression=0.160148847104794,0.697950815278722,0,2.41971369045464,1.00179145989269,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.47997726838022,0.68822784320151,0,0,0.430942465371778,0.950117097281869,1.00812051903972,0.665191531965914,0,0,0,2.59966457776147,3.32469290716985,4.28755648150975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.587943535678524,0,0,0,0,0,0,0,0,0,0.209446706813455,0.766371165625774,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0,0,1.01839363850316,0.248813941220186,1.0108910337347,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0,0,0.351902248327898,0,0,0.348252166522167,0,0.995171334092466,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,1.65209391491899,1.58670339998127,0,0,0.257734922644187,0.605050573870028,0.22237804384487,0.570676878337677,1.42358718463353,1.15289268306808,0.502670417600539,0.795825888164603,0.38992817423824,0.898819408654221,0.216138049874694,0.995706366271836,0,0.456994050438915,0,1.01825663922657,0.387904974335251,0.841629838683823,0.948548056863859,0.590440591918409,0.627994911365499,0.123397163921801,0.296452627087149,0,0,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0.252578877947112,0.179397413521912,1.4473305640901,0,0.189491411770485,0.488894929326078,0.678980343100753,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0.491764273019036,0.827810238914197,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.712262414669021,0.162886959353576,0.329940245945071,0,0.728341908464944,0.302323556964751,0.754420319023592,0.885905678642318,0.614870295887855,0.516856586336442,0,0.712994756769443,1.26414703174326,0,1.03135543248187,0.680879211507576,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0,0,0,0,0,1.45740418314925,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.743881101528023,1.04702376793612,0.518459893167171,0,0.56369293868419,1.64468200648377,1.15820943319968,1.36115831840833,2.58319646955462,2.36538575687089,3.16864544343536,5.59878854828985,1.46803082195995,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0.505394423527595,0.25347929989024,0,0,0.0640251524048693,0.114870937911227,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0.409231043169689,0,0,0,0,0,0,0,0.231867835620421 | ||
|short_description=p2@BC021891 | |||
}} | }} |
Latest revision as of 17:52, 1 October 2015
Short description: | p2@BC021891 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BC021891_5end |
Coexpression cluster: | MCL_coexpression_mm9:2550 |
Association with transcript: | -99bp_to_ENSMUST00000034316, NM_145608, uc009nyq.1_5end |
EntrezGene: | BC021891 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 5.17e-13 | 9 |
epithelial cell of alimentary canal | 5.17e-13 | 9 |
intestinal crypt stem cell | 1.93e-11 | 3 |
endo-epithelial cell | 1.49e-07 | 15 |
endodermal cell | 2.65e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 2.60e-20 | 15 |
male organism | 6.26e-19 | 16 |
male reproductive system | 6.26e-19 | 16 |
testis | 5.86e-18 | 14 |
intestinal mucosa | 3.46e-15 | 13 |
wall of intestine | 3.46e-15 | 13 |
gastrointestinal system mucosa | 3.46e-15 | 13 |
external genitalia | 1.62e-14 | 17 |
indifferent external genitalia | 1.62e-14 | 17 |
indifferent gonad | 1.62e-14 | 17 |
gonad | 1.26e-13 | 18 |
gonad primordium | 1.26e-13 | 18 |
epithelium of mucosa | 5.17e-13 | 9 |
gastrointestinal system epithelium | 5.17e-13 | 9 |
intestinal epithelium | 5.17e-13 | 9 |
mucosa | 5.34e-13 | 15 |
intestine | 5.62e-13 | 31 |
reproductive organ | 5.12e-12 | 24 |
reproductive structure | 5.92e-11 | 26 |
reproductive system | 5.92e-11 | 26 |
simple columnar epithelium | 1.56e-10 | 11 |
body cavity precursor | 4.39e-10 | 38 |
anatomical cavity | 9.11e-10 | 39 |
gastrointestinal system | 3.37e-09 | 47 |
body cavity | 9.33e-09 | 37 |
body cavity or lining | 9.33e-09 | 37 |
organ component layer | 1.16e-07 | 24 |