FF:12124-128C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005977 | |||
|accession_numbers=CAGE;DRX008785;DRR009657;DRZ001082;DRZ002467;DRZ012432;DRZ013817 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000021,FF:0000103,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.75!759.52!Fosb;;chr7:19895384..19895399,-!p2@Fosb!2.37!326.65!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.34!2085.42!Nr4a1;;chr1:193007123..193007139,-!p1@Atf3!2.16!757.98!Atf3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.93!248.97!Zc3h12a;;chr1:38721792..38721845,-!p1@Aff3!1.93!103.42!Aff3;;chr11:16908650..16908690,-!p1@Plek!1.80!362.47!Plek;;chr7:31206743..31206761,+!p1@Nfkbid!1.80!84.53!Nfkbid;;chr16:55838757..55838774,-!p2@Nfkbiz!1.79!70.82!Nfkbiz;;chr12:86814833..86814846,+!p1@Fos!1.78!1278.04!Fos;;chr8:87502608..87502623,-!p1@Junb!1.68!713.33!Junb;;chr16:92826249..92826325,-!p1@Runx1!1.65!103.28!Runx1;;chr11:23670750..23670789,-!p2@Rel!1.56!65.50!Rel;;chr19:5447886..5447905,+!p1@Fosl1!1.56!34.99!Fosl1;;chr4:48058129..48058179,+!p2@Nr4a3!1.53!60.60!Nr4a3;;chr11:11586218..11586285,+!p1@Ikzf1!1.50!95.59!Ikzf1;;chr5:140267510..140267555,+!p2@Mafk!1.49!69.00!Mafk;;chr6:52176164..52176195,-!p1@Hoxa9!1.49!37.09!Hoxa9;;chr2:90936978..90937023,+!p3@Sfpi1!1.47!53.46!Sfpi1;;chr1:52065508..52065522,+!p2@Stat4!1.46!32.75!Stat4;;chr13:59923965..59924003,-!p2@Zcchc6!1.45!32.19!Zcchc6;;chr17:44873258..44873281,-!p5@Runx2!1.44!34.85!Runx2;;chr16:55822241..55822258,-!p1@Nfkbiz!1.43!773.79!Nfkbiz;;chr2:56967334..56967366,-!p1@Nr4a2!1.43!52.06!Nr4a2;;chr2:90936901..90936945,+!p1@Sfpi1!1.42!129.32!Sfpi1;;chr4:134708451..134708469,+!p1@Runx3!1.42!44.36!Runx3;;chr5:92391466..92391471,+!p2@Thap6!1.42!36.39!Thap6;;chr4:94718861..94718872,-!p2@Jun!1.41!177.04!Jun;;chr17:44872561..44872615,-!p1@Runx2!1.40!54.16!Runx2;;chr19:5447692..5447711,+!p2@Fosl1!1.40!23.93!Fosl1;;chr2:90936947..90936977,+!p2@Sfpi1!1.39!45.90!Sfpi1;;chr7:19895546..19895577,-!p3@Fosb!1.39!23.65!Fosb;;chr10:20880629..20880683,-!p1@Myb!1.37!62.98!Myb;;chr1:52065454..52065495,+!p1@Stat4!1.37!36.39!Stat4;;chr7:31208285..31208312,+!p3@Nfkbid!1.36!23.93!Nfkbid;;chr3:135354384..135354443,-!p1@Nfkb1!1.35!125.68!Nfkb1;;chr14:79915425..79915501,+!p1@Elf1!1.32!170.46!Elf1;;chr15:25914235..25914246,+!p5@Zfp622!1.32!19.73!Zfp622;;chr4:48058016..48058032,+!p3@Nr4a3!1.31!32.61!Nr4a3;;chr13:5860776..5860796,+!p1@Klf6!1.30!437.91!Klf6;;chr11:23670953..23671028,-!p1@Rel!1.26!96.29!Rel;;chr7:31207408..31207450,+!p4@Nfkbid!1.26!27.99!Nfkbid;;chr12:56593574..56593592,-!p1@Nfkbia!1.25!834.25!Nfkbia;;chr11:53583544..53583559,+!p1@Irf1!1.25!274.86!Irf1;;chr4:55545337..55545357,-!p1@Klf4!1.25!241.70!Klf4;;chr15:79177964..79177986,+!p1@Maff!1.25!56.54!Maff;;chr19:5637528..5637548,+!p2@Rela!1.24!94.19!Rela;;chr6:108610428..108610440,+!p4@Bhlhe40!1.23!22.11!Bhlhe40;;chr1:36364590..36364608,+!p1@Arid5a!1.22!156.61!Arid5a;;chr18:3281750..3281776,-!p2@Crem!1.22!31.07!Crem;;chr7:19895122..19895142,-!p4@Fosb!1.22!15.53!Fosb;;chr4:94718879..94718898,-!p1@Jun!1.21!1074.97!Jun;;chr19:12871064..12871095,-!p2@Zfp91!1.21!15.11!Zfp91;;chr3:135271185..135271254,-!p4@Nfkb1!1.20!26.73!Nfkb1;;chr15:38230448..38230470,-!p1@Klf10!1.19!296.14!Klf10;;chr6:53523358..53523388,+!p1@Creb5!1.19!170.74!Creb5;;chr17:45692676..45692695,+!p2@Nfkbie!1.19!29.39!Nfkbie;;chr13:83663902..83663927,+!p1@Mef2c!1.18!333.92!Mef2c;;chr11:90252223..90252240,-!p1@Hlf!1.17!113.50!Hlf;;chr13:5860872..5860883,+!p3@Klf6!1.17!27.71!Klf6;;chr19:43686789..43686811,+!p1@Nkx2-3!1.16!13.44!Nkx2-3;;chr10:20880731..20880775,-!p2@Myb!1.15!27.71!Myb;;chr8:74842952..74842970,+!p1@Klf2!1.14!855.94!Klf2;;chr11:100683839..100683890,-!p2@Stat5b!1.14!29.67!Stat5b;;chr17:45692642..45692663,+!p1@Nfkbie!1.13!39.47!Nfkbie;;chr15:103085802..103085817,-!p4@Nfe2!1.13!15.81!Nfe2;;chr19:46379199..46379301,+!p1@Nfkb2!1.12!69.00!Nfkb2;;chr15:38230415..38230426,-!p2@Klf10!1.12!42.41!Klf10;;chr4:48058047..48058062,+!p1@Nr4a3!1.12!18.61!Nr4a3;;chr15:79178060..79178074,+!p2@Maff!1.12!15.81!Maff;;chr3:30993974..30994045,+!p1@Skil!1.11!327.49!Skil;;chr7:20214704..20214800,-!p1@Relb!1.11!38.91!Relb;;chr14:79915502..79915514,+!p4@Elf1!1.11!18.33!Elf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.11!15.39!Zbtb11;;chr14:79915521..79915539,+!p5@Elf1!1.11!14.28!Elf1;;chr18:75527210..75527215,+!p4@Smad7!1.10!20.01!Smad7;;chr18:35020854..35020869,+!p1@Egr1!1.09!433.85!Egr1;;chr7:71083729..71083742,-!p4@Klf13!1.09!20.15!Klf13;;chr19:37509324..37509337,+!p1@Hhex!1.08!77.53!Hhex;;chr1:52065530..52065548,+!p3@Stat4!1.08!10.92!Stat4;;chr4:124805092..124805135,-!p2@Zc3h12a!1.07!46.04!Zc3h12a;;chr6:99216488..99216534,-!p2@Foxp1!1.07!30.93!Foxp1;;chr6:52163319..52163342,-!p1@Hoxa3!1.07!15.67!Hoxa3;;chr17:51971932..51971958,-!p2@Satb1!1.06!14.55!Satb1;;chr1:193041811..193041838,-!p2@Atf3!1.06!10.36!Atf3;;chr5:22940353..22940372,+!p3@Mll5!1.03!19.17!Mll5;;chr15:25914217..25914232,+!p3@Zfp622!1.03!18.75!Zfp622;;chr15:79178029..79178044,+!p4@Maff!1.03!12.04!Maff;;chr11:100800641..100800669,-!p3@Stat3!1.02!16.79!Stat3;;chr8:73222425..73222444,+!p2@Jund!1.02!9.38!Jund;;chr6:108610610..108610676,+!p1@Bhlhe40!1.01!457.64!Bhlhe40;;chr16:95680889..95680991,-!p1@Erg!1.01!75.99!Erg;;chr6:133986042..133986052,+!p7@Etv6!1.01!12.18!Etv6;;chr1:38721779..38721790,-!p6@Aff3!1.01!9.24!Aff3;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.00!31.63!Zfp64;;chr1:38721767..38721778,-!p5@Aff3!1.00!8.96!Aff3;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!1.00!8.96!Zfp64;;chr8:87225670..87225697,+!p2@Lyl1!0.98!25.61!Lyl1;;chr16:3744162..3744180,+!p2@Zfp263!0.98!24.07!Zfp263;;chr10:20880698..20880717,-!p3@Myb!0.98!13.44!Myb;;chr11:23671230..23671264,-!p6@Rel!0.98!8.54!Rel;;chr6:133985993..133986029,+!p2@Etv6!0.97!54.86!Etv6;;chr5:125538737..125538781,-!p2@Ncor2!0.97!30.79!Ncor2;;chr18:3281725..3281740,-!p3@Crem!0.97!10.64!Crem;;chr10:126727842..126727859,+!p1@Ddit3!0.95!233.86!Ddit3;;chr13:83663868..83663894,+!p2@Mef2c!0.95!117.56!Mef2c;;chrX:137077653..137077669,-!p3@Tsc22d3!0.95!36.81!Tsc22d3;;chr13:30841099..30841116,+!p1@Irf4!0.95!12.74!Irf4;;chr11:11585678..11585745,+!p5@Ikzf1!0.95!11.76!Ikzf1;;chr6:52176144..52176161,-!p2@Hoxa9!0.95!7.98!Hoxa9;;chr11:23978111..23978134,+!p3@Bcl11a!0.94!16.65!Bcl11a;;chr16:3744192..3744206,+!p4@Zfp263!0.93!9.80!Zfp263;;chr16:92826232..92826245,-!p4@Runx1!0.93!7.42!Runx1;;chr12:86815639..86815664,+!p2@Fos!0.93!7.42!Fos;;chr6:108610766..108610781,+!p2@Bhlhe40!0.92!13.44!Bhlhe40;;chr10:119913792..119913820,-!p5@Hmga2!0.92!12.88!Hmga2;;chr2:126501847..126501876,-!p5@Gabpb1!0.92!8.40!Gabpb1;;chr6:88148650..88148669,+!p1@Gata2!0.91!62.42!Gata2;;chrX:137077608..137077619,-!p6@Tsc22d3!0.91!9.66!Tsc22d3;;chr14:76904313..76904328,+!p1@Tsc22d1!0.90!1399.93!Tsc22d1;;chr17:51971960..51971979,-!p1@Satb1!0.90!9.38!Satb1;;chr4:134676555..134676575,+!p2@Runx3!0.90!7.00!Runx3;;chr16:55838779..55838788,-!p9@Nfkbiz!0.90!6.86!Nfkbiz;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.89!51.08!Hmga1;;chr16:92826180..92826191,-!p5@Runx1!0.89!6.72!Runx1;;chr2:126501799..126501832,-!p4@Gabpb1!0.89!6.72!Gabpb1;;chr8:73222830..73222844,+!p1@Jund!0.87!1689.91!Jund;;chr13:59924354..59924366,-!p3@Zcchc6!0.87!12.46!Zcchc6;;chr11:18918406..18918431,-!p6@Meis1!0.87!8.82!Meis1;;chr6:28348078..28348109,-!p5@Zfp800!0.87!6.44!Zfp800;;chr7:138553839..138553860,-!p2@Ikzf5!0.87!6.44!Ikzf5;;chr16:55838743..55838754,-!p6@Nfkbiz!0.87!6.44!Nfkbiz;;chr6:86619104..86619119,-!p1@Mxd1!0.86!54.30!Mxd1;;chr5:140267476..140267493,+!p1@Mafk!0.86!37.09!Mafk;;chr4:63064364..63064384,-!p1@Akna!0.86!19.03!Akna;;chr10:5734525..5734569,-!p3@Esr1!0.86!10.50!Esr1;;chr17:84586544..84586592,-!p3@Zfp36l2!0.86!8.82!Zfp36l2;;chr16:55838940..55838966,-!p5@Nfkbiz!0.86!7.14!Nfkbiz;;chr11:23670827..23670846,-!p3@Rel!0.86!6.30!Rel;;chr1:92949999..92950097,+!p1@Lrrfip1!0.85!171.44!Lrrfip1;;chr1:133904217..133904250,+!p5@Elk4!0.85!20.85!Elk4;;chr4:133801432..133801448,-!p3@Zfp593!0.85!9.66!Zfp593;;chr2:126501197..126501245,-!p1@Gabpb1!0.83!47.02!Gabpb1;;chr6:133986088..133986122,+!p4@Etv6!0.83!26.31!Etv6;;chr19:5637501..5637517,+!p4@Rela!0.83!24.63!Rela;;chr6:133985709..133985735,+!p5@Etv6!0.83!17.07!Etv6;;chr11:18918434..18918489,-!p3@Meis1!0.83!9.38!Meis1;;chr3:30995296..30995300,+!p6@Skil!0.83!7.28!Skil;;chr6:28347999..28348023,-!p3@Zfp800!0.83!5.74!Zfp800;;chr18:75527030..75527055,+!p2@Smad7!0.82!37.93!Smad7;;chr13:64254457..64254497,-!p1@Zfp367!0.82!26.87!Zfp367;;chr1:133904901..133904934,+!p3@Elk4!0.82!17.21!Elk4;;chr2:126501184..126501196,-!p6@Gabpb1!0.82!7.98!Gabpb1;;chr13:64254437..64254453,-!p4@Zfp367!0.82!7.84!Zfp367;;chr18:35020615..35020641,+!p2@Egr1!0.82!6.86!Egr1;;chr2:56967316..56967327,-!p3@Nr4a2!0.82!5.60!Nr4a2;;chr10:20881239..20881254,-!p5@Myb!0.82!5.60!Myb;;chr2:156665817..156665877,+!p1@Tgif2!0.81!37.65!Tgif2;;chr8:87225702..87225726,+!p3@Lyl1!0.81!11.62!Lyl1;;chr6:29479277..29479296,+!p2@Irf5!0.81!5.46!Irf5;;chr9:32348943..32349001,-!p1@Fli1!0.80!46.88!Fli1;;chr8:87225329..87225396,+!p1@Lyl1!0.80!21.69!Lyl1;;chr10:5734473..5734489,-!p5@Esr1!0.80!5.32!Esr1;;chr16:55822638..55822669,-!p3@Nfkbiz!0.79!8.12!Nfkbiz;;chr5:32438395..32438406,+!p3@Fosl2!0.79!8.12!Fosl2;;chr16:3872255..3872283,-!p4@Zfp597!0.79!7.84!Zfp597;;chr17:44872524..44872537,-!p9@Runx2!0.79!5.18!Runx2;;chr15:80085920..80085941,+!p1@Atf4!0.78!633.28!Atf4;;chr2:153475178..153475196,+!p1@Dnmt3b!0.78!11.34!Dnmt3b;;chr12:78063057..78063070,-!p3@Max!0.78!11.20!Max;;chr3:30408603..30408668,-!p1@Mecom!0.77!12.18!Mecom;;chr10:5958538..5958568,+!p1@Zbtb2!0.76!23.65!Zbtb2;;chr2:90922554..90922575,+!p4@Sfpi1!0.76!9.10!Sfpi1;;chr11:90250944..90250982,-!p2@Hlf!0.76!8.40!Hlf;;chr6:133985790..133985801,+!p8@Etv6!0.76!6.30!Etv6;;chr11:11585912..11585950,+!p6@Ikzf1!0.76!6.16!Ikzf1;;chr11:90251852..90251855,-!p4@Hlf!0.76!6.02!Hlf;;chr6:133985839..133985915,+!p1@Etv6!0.75!86.07!Etv6;;chr12:25336211..25336274,+!p1@Klf11!0.75!53.74!Klf11;;chr11:100721761..100721851,+!p1@Stat5a!0.75!37.51!Stat5a;;chr16:87699206..87699229,+!p3@Bach1!0.75!27.57!Bach1;;chr10:20032330..20032345,+!p3@Bclaf1!0.75!24.21!Bclaf1;;chr11:23977565..23977612,+!p5@Bcl11a!0.75!10.64!Bcl11a;;chr12:72117645..72117677,+!p3@Arid4a!0.75!10.50!Arid4a;;chr17:71200529..71200556,-!p1@Tgif1!0.74!80.89!Tgif1;;chr8:107694661..107694713,+!p2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| |expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.75!759.52!Fosb;;chr7:19895384..19895399,-!p2@Fosb!2.37!326.65!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.34!2085.42!Nr4a1;;chr1:193007123..193007139,-!p1@Atf3!2.16!757.98!Atf3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.93!248.97!Zc3h12a;;chr1:38721792..38721845,-!p1@Aff3!1.93!103.42!Aff3;;chr11:16908650..16908690,-!p1@Plek!1.80!362.47!Plek;;chr7:31206743..31206761,+!p1@Nfkbid!1.80!84.53!Nfkbid;;chr16:55838757..55838774,-!p2@Nfkbiz!1.79!70.82!Nfkbiz;;chr12:86814833..86814846,+!p1@Fos!1.78!1278.04!Fos;;chr8:87502608..87502623,-!p1@Junb!1.68!713.33!Junb;;chr16:92826249..92826325,-!p1@Runx1!1.65!103.28!Runx1;;chr11:23670750..23670789,-!p2@Rel!1.56!65.50!Rel;;chr19:5447886..5447905,+!p1@Fosl1!1.56!34.99!Fosl1;;chr4:48058129..48058179,+!p2@Nr4a3!1.53!60.60!Nr4a3;;chr11:11586218..11586285,+!p1@Ikzf1!1.50!95.59!Ikzf1;;chr5:140267510..140267555,+!p2@Mafk!1.49!69.00!Mafk;;chr6:52176164..52176195,-!p1@Hoxa9!1.49!37.09!Hoxa9;;chr2:90936978..90937023,+!p3@Sfpi1!1.47!53.46!Sfpi1;;chr1:52065508..52065522,+!p2@Stat4!1.46!32.75!Stat4;;chr13:59923965..59924003,-!p2@Zcchc6!1.45!32.19!Zcchc6;;chr17:44873258..44873281,-!p5@Runx2!1.44!34.85!Runx2;;chr16:55822241..55822258,-!p1@Nfkbiz!1.43!773.79!Nfkbiz;;chr2:56967334..56967366,-!p1@Nr4a2!1.43!52.06!Nr4a2;;chr2:90936901..90936945,+!p1@Sfpi1!1.42!129.32!Sfpi1;;chr4:134708451..134708469,+!p1@Runx3!1.42!44.36!Runx3;;chr5:92391466..92391471,+!p2@Thap6!1.42!36.39!Thap6;;chr4:94718861..94718872,-!p2@Jun!1.41!177.04!Jun;;chr17:44872561..44872615,-!p1@Runx2!1.40!54.16!Runx2;;chr19:5447692..5447711,+!p2@Fosl1!1.40!23.93!Fosl1;;chr2:90936947..90936977,+!p2@Sfpi1!1.39!45.90!Sfpi1;;chr7:19895546..19895577,-!p3@Fosb!1.39!23.65!Fosb;;chr10:20880629..20880683,-!p1@Myb!1.37!62.98!Myb;;chr1:52065454..52065495,+!p1@Stat4!1.37!36.39!Stat4;;chr7:31208285..31208312,+!p3@Nfkbid!1.36!23.93!Nfkbid;;chr3:135354384..135354443,-!p1@Nfkb1!1.35!125.68!Nfkb1;;chr14:79915425..79915501,+!p1@Elf1!1.32!170.46!Elf1;;chr15:25914235..25914246,+!p5@Zfp622!1.32!19.73!Zfp622;;chr4:48058016..48058032,+!p3@Nr4a3!1.31!32.61!Nr4a3;;chr13:5860776..5860796,+!p1@Klf6!1.30!437.91!Klf6;;chr11:23670953..23671028,-!p1@Rel!1.26!96.29!Rel;;chr7:31207408..31207450,+!p4@Nfkbid!1.26!27.99!Nfkbid;;chr12:56593574..56593592,-!p1@Nfkbia!1.25!834.25!Nfkbia;;chr11:53583544..53583559,+!p1@Irf1!1.25!274.86!Irf1;;chr4:55545337..55545357,-!p1@Klf4!1.25!241.70!Klf4;;chr15:79177964..79177986,+!p1@Maff!1.25!56.54!Maff;;chr19:5637528..5637548,+!p2@Rela!1.24!94.19!Rela;;chr6:108610428..108610440,+!p4@Bhlhe40!1.23!22.11!Bhlhe40;;chr1:36364590..36364608,+!p1@Arid5a!1.22!156.61!Arid5a;;chr18:3281750..3281776,-!p2@Crem!1.22!31.07!Crem;;chr7:19895122..19895142,-!p4@Fosb!1.22!15.53!Fosb;;chr4:94718879..94718898,-!p1@Jun!1.21!1074.97!Jun;;chr19:12871064..12871095,-!p2@Zfp91!1.21!15.11!Zfp91;;chr3:135271185..135271254,-!p4@Nfkb1!1.20!26.73!Nfkb1;;chr15:38230448..38230470,-!p1@Klf10!1.19!296.14!Klf10;;chr6:53523358..53523388,+!p1@Creb5!1.19!170.74!Creb5;;chr17:45692676..45692695,+!p2@Nfkbie!1.19!29.39!Nfkbie;;chr13:83663902..83663927,+!p1@Mef2c!1.18!333.92!Mef2c;;chr11:90252223..90252240,-!p1@Hlf!1.17!113.50!Hlf;;chr13:5860872..5860883,+!p3@Klf6!1.17!27.71!Klf6;;chr19:43686789..43686811,+!p1@Nkx2-3!1.16!13.44!Nkx2-3;;chr10:20880731..20880775,-!p2@Myb!1.15!27.71!Myb;;chr8:74842952..74842970,+!p1@Klf2!1.14!855.94!Klf2;;chr11:100683839..100683890,-!p2@Stat5b!1.14!29.67!Stat5b;;chr17:45692642..45692663,+!p1@Nfkbie!1.13!39.47!Nfkbie;;chr15:103085802..103085817,-!p4@Nfe2!1.13!15.81!Nfe2;;chr19:46379199..46379301,+!p1@Nfkb2!1.12!69.00!Nfkb2;;chr15:38230415..38230426,-!p2@Klf10!1.12!42.41!Klf10;;chr4:48058047..48058062,+!p1@Nr4a3!1.12!18.61!Nr4a3;;chr15:79178060..79178074,+!p2@Maff!1.12!15.81!Maff;;chr3:30993974..30994045,+!p1@Skil!1.11!327.49!Skil;;chr7:20214704..20214800,-!p1@Relb!1.11!38.91!Relb;;chr14:79915502..79915514,+!p4@Elf1!1.11!18.33!Elf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.11!15.39!Zbtb11;;chr14:79915521..79915539,+!p5@Elf1!1.11!14.28!Elf1;;chr18:75527210..75527215,+!p4@Smad7!1.10!20.01!Smad7;;chr18:35020854..35020869,+!p1@Egr1!1.09!433.85!Egr1;;chr7:71083729..71083742,-!p4@Klf13!1.09!20.15!Klf13;;chr19:37509324..37509337,+!p1@Hhex!1.08!77.53!Hhex;;chr1:52065530..52065548,+!p3@Stat4!1.08!10.92!Stat4;;chr4:124805092..124805135,-!p2@Zc3h12a!1.07!46.04!Zc3h12a;;chr6:99216488..99216534,-!p2@Foxp1!1.07!30.93!Foxp1;;chr6:52163319..52163342,-!p1@Hoxa3!1.07!15.67!Hoxa3;;chr17:51971932..51971958,-!p2@Satb1!1.06!14.55!Satb1;;chr1:193041811..193041838,-!p2@Atf3!1.06!10.36!Atf3;;chr5:22940353..22940372,+!p3@Mll5!1.03!19.17!Mll5;;chr15:25914217..25914232,+!p3@Zfp622!1.03!18.75!Zfp622;;chr15:79178029..79178044,+!p4@Maff!1.03!12.04!Maff;;chr11:100800641..100800669,-!p3@Stat3!1.02!16.79!Stat3;;chr8:73222425..73222444,+!p2@Jund!1.02!9.38!Jund;;chr6:108610610..108610676,+!p1@Bhlhe40!1.01!457.64!Bhlhe40;;chr16:95680889..95680991,-!p1@Erg!1.01!75.99!Erg;;chr6:133986042..133986052,+!p7@Etv6!1.01!12.18!Etv6;;chr1:38721779..38721790,-!p6@Aff3!1.01!9.24!Aff3;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.00!31.63!Zfp64;;chr1:38721767..38721778,-!p5@Aff3!1.00!8.96!Aff3;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!1.00!8.96!Zfp64;;chr8:87225670..87225697,+!p2@Lyl1!0.98!25.61!Lyl1;;chr16:3744162..3744180,+!p2@Zfp263!0.98!24.07!Zfp263;;chr10:20880698..20880717,-!p3@Myb!0.98!13.44!Myb;;chr11:23671230..23671264,-!p6@Rel!0.98!8.54!Rel;;chr6:133985993..133986029,+!p2@Etv6!0.97!54.86!Etv6;;chr5:125538737..125538781,-!p2@Ncor2!0.97!30.79!Ncor2;;chr18:3281725..3281740,-!p3@Crem!0.97!10.64!Crem;;chr10:126727842..126727859,+!p1@Ddit3!0.95!233.86!Ddit3;;chr13:83663868..83663894,+!p2@Mef2c!0.95!117.56!Mef2c;;chrX:137077653..137077669,-!p3@Tsc22d3!0.95!36.81!Tsc22d3;;chr13:30841099..30841116,+!p1@Irf4!0.95!12.74!Irf4;;chr11:11585678..11585745,+!p5@Ikzf1!0.95!11.76!Ikzf1;;chr6:52176144..52176161,-!p2@Hoxa9!0.95!7.98!Hoxa9;;chr11:23978111..23978134,+!p3@Bcl11a!0.94!16.65!Bcl11a;;chr16:3744192..3744206,+!p4@Zfp263!0.93!9.80!Zfp263;;chr16:92826232..92826245,-!p4@Runx1!0.93!7.42!Runx1;;chr12:86815639..86815664,+!p2@Fos!0.93!7.42!Fos;;chr6:108610766..108610781,+!p2@Bhlhe40!0.92!13.44!Bhlhe40;;chr10:119913792..119913820,-!p5@Hmga2!0.92!12.88!Hmga2;;chr2:126501847..126501876,-!p5@Gabpb1!0.92!8.40!Gabpb1;;chr6:88148650..88148669,+!p1@Gata2!0.91!62.42!Gata2;;chrX:137077608..137077619,-!p6@Tsc22d3!0.91!9.66!Tsc22d3;;chr14:76904313..76904328,+!p1@Tsc22d1!0.90!1399.93!Tsc22d1;;chr17:51971960..51971979,-!p1@Satb1!0.90!9.38!Satb1;;chr4:134676555..134676575,+!p2@Runx3!0.90!7.00!Runx3;;chr16:55838779..55838788,-!p9@Nfkbiz!0.90!6.86!Nfkbiz;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.89!51.08!Hmga1;;chr16:92826180..92826191,-!p5@Runx1!0.89!6.72!Runx1;;chr2:126501799..126501832,-!p4@Gabpb1!0.89!6.72!Gabpb1;;chr8:73222830..73222844,+!p1@Jund!0.87!1689.91!Jund;;chr13:59924354..59924366,-!p3@Zcchc6!0.87!12.46!Zcchc6;;chr11:18918406..18918431,-!p6@Meis1!0.87!8.82!Meis1;;chr6:28348078..28348109,-!p5@Zfp800!0.87!6.44!Zfp800;;chr7:138553839..138553860,-!p2@Ikzf5!0.87!6.44!Ikzf5;;chr16:55838743..55838754,-!p6@Nfkbiz!0.87!6.44!Nfkbiz;;chr6:86619104..86619119,-!p1@Mxd1!0.86!54.30!Mxd1;;chr5:140267476..140267493,+!p1@Mafk!0.86!37.09!Mafk;;chr4:63064364..63064384,-!p1@Akna!0.86!19.03!Akna;;chr10:5734525..5734569,-!p3@Esr1!0.86!10.50!Esr1;;chr17:84586544..84586592,-!p3@Zfp36l2!0.86!8.82!Zfp36l2;;chr16:55838940..55838966,-!p5@Nfkbiz!0.86!7.14!Nfkbiz;;chr11:23670827..23670846,-!p3@Rel!0.86!6.30!Rel;;chr1:92949999..92950097,+!p1@Lrrfip1!0.85!171.44!Lrrfip1;;chr1:133904217..133904250,+!p5@Elk4!0.85!20.85!Elk4;;chr4:133801432..133801448,-!p3@Zfp593!0.85!9.66!Zfp593;;chr2:126501197..126501245,-!p1@Gabpb1!0.83!47.02!Gabpb1;;chr6:133986088..133986122,+!p4@Etv6!0.83!26.31!Etv6;;chr19:5637501..5637517,+!p4@Rela!0.83!24.63!Rela;;chr6:133985709..133985735,+!p5@Etv6!0.83!17.07!Etv6;;chr11:18918434..18918489,-!p3@Meis1!0.83!9.38!Meis1;;chr3:30995296..30995300,+!p6@Skil!0.83!7.28!Skil;;chr6:28347999..28348023,-!p3@Zfp800!0.83!5.74!Zfp800;;chr18:75527030..75527055,+!p2@Smad7!0.82!37.93!Smad7;;chr13:64254457..64254497,-!p1@Zfp367!0.82!26.87!Zfp367;;chr1:133904901..133904934,+!p3@Elk4!0.82!17.21!Elk4;;chr2:126501184..126501196,-!p6@Gabpb1!0.82!7.98!Gabpb1;;chr13:64254437..64254453,-!p4@Zfp367!0.82!7.84!Zfp367;;chr18:35020615..35020641,+!p2@Egr1!0.82!6.86!Egr1;;chr2:56967316..56967327,-!p3@Nr4a2!0.82!5.60!Nr4a2;;chr10:20881239..20881254,-!p5@Myb!0.82!5.60!Myb;;chr2:156665817..156665877,+!p1@Tgif2!0.81!37.65!Tgif2;;chr8:87225702..87225726,+!p3@Lyl1!0.81!11.62!Lyl1;;chr6:29479277..29479296,+!p2@Irf5!0.81!5.46!Irf5;;chr9:32348943..32349001,-!p1@Fli1!0.80!46.88!Fli1;;chr8:87225329..87225396,+!p1@Lyl1!0.80!21.69!Lyl1;;chr10:5734473..5734489,-!p5@Esr1!0.80!5.32!Esr1;;chr16:55822638..55822669,-!p3@Nfkbiz!0.79!8.12!Nfkbiz;;chr5:32438395..32438406,+!p3@Fosl2!0.79!8.12!Fosl2;;chr16:3872255..3872283,-!p4@Zfp597!0.79!7.84!Zfp597;;chr17:44872524..44872537,-!p9@Runx2!0.79!5.18!Runx2;;chr15:80085920..80085941,+!p1@Atf4!0.78!633.28!Atf4;;chr2:153475178..153475196,+!p1@Dnmt3b!0.78!11.34!Dnmt3b;;chr12:78063057..78063070,-!p3@Max!0.78!11.20!Max;;chr3:30408603..30408668,-!p1@Mecom!0.77!12.18!Mecom;;chr10:5958538..5958568,+!p1@Zbtb2!0.76!23.65!Zbtb2;;chr2:90922554..90922575,+!p4@Sfpi1!0.76!9.10!Sfpi1;;chr11:90250944..90250982,-!p2@Hlf!0.76!8.40!Hlf;;chr6:133985790..133985801,+!p8@Etv6!0.76!6.30!Etv6;;chr11:11585912..11585950,+!p6@Ikzf1!0.76!6.16!Ikzf1;;chr11:90251852..90251855,-!p4@Hlf!0.76!6.02!Hlf;;chr6:133985839..133985915,+!p1@Etv6!0.75!86.07!Etv6;;chr12:25336211..25336274,+!p1@Klf11!0.75!53.74!Klf11;;chr11:100721761..100721851,+!p1@Stat5a!0.75!37.51!Stat5a;;chr16:87699206..87699229,+!p3@Bach1!0.75!27.57!Bach1;;chr10:20032330..20032345,+!p3@Bclaf1!0.75!24.21!Bclaf1;;chr11:23977565..23977612,+!p5@Bcl11a!0.75!10.64!Bcl11a;;chr12:72117645..72117677,+!p3@Arid4a!0.75!10.50!Arid4a;;chr17:71200529..71200556,-!p1@Tgif1!0.74!80.89!Tgif1;;chr8:107694661..107694713,+!p2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| ||
Line 39: | Line 43: | ||
|is_a=EFO:0002091;;FF:0000021;;FF:0000103 | |is_a=EFO:0002091;;FF:0000021;;FF:0000103 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12535 | |||
|library_id_phase_based=2:CNhs12535 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12124 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12124 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep2.CNhs12535.12124-128C9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep2.CNhs12535.12124-128C9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep2.CNhs12535.12124-128C9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep2.CNhs12535.12124-128C9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep2.CNhs12535.12124-128C9.mm9.nobarcode.rdna.fa.gz | |||
|name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2 | |name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12535,LSID920,release012,COMPLETED | |profile_hcage=CNhs12535,LSID920,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.056886356216389,0,-0.174964349979897,0,0,0,0,-0.0274528841801525,0,0,0,0,0.11519345261068,0,-0.0847163262154184,0,0.148295322256383,0,0,0,0,0,0,0,0,0,0,0,-0.23216650090268,0,0,0,0,0,-0.036665559523882,-0.0810199640178311,-0.0813100747001601,-0.984211366477826,0.201323340033329,0.056886356216389,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.056886356216389,0,0.0175987568055965,0,0.107177024667156,0,-0.117389802908326,0.160541320704294,-0.101204686554694,-0.0586559928255204,0,0,-0.0672592169170953,0,0.354024468246181,0,-0.0445577358621875,-0.175569308430604,-0.59591488074057,-0.0788315948399074,0,0,0,0,0,0,-0.268029527476267,-0.895264133183884,-0.269803002231399,0,0,0,0,0 | |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 75: | ||
|rna_weight_ug=1.056 | |rna_weight_ug=1.056 | ||
|sample_age=9-10weeks | |sample_age=9-10weeks | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 96: | ||
|top_motifs=NFE2:3.48932646508;CREB1:3.42590658672;NFKB1_REL_RELA:3.35514655844;ATF4:3.34250013408;ATF5_CREB3:2.94067251097;RUNX1..3:2.87573280075;FOS_FOS{B,L1}_JUN{B,D}:2.76572978935;BACH2:2.66256580019;SPI1:2.4565426182;ELF1,2,4:2.38764773373;ETS1,2:2.3830370473;bHLH_family:2.27686579962;SPIB:2.20510928966;DMAP1_NCOR{1,2}_SMARC:2.18487884068;PAX8:2.18107099235;BPTF:1.97540918111;FOXP3:1.87606426027;PAX2:1.84457226252;POU2F1..3:1.71275169093;FOX{I1,J2}:1.58122347445;FOX{D1,D2}:1.46555245831;NFATC1..3:1.42132492095;E2F1..5:1.41932691372;IRF1,2:1.39924999786;SPZ1:1.29899905657;FOSL2:1.26656319041;NFE2L1:1.22675134435;MYB:1.15795204474;ALX4:1.14455289166;ELK1,4_GABP{A,B1}:1.13705284776;PPARG:1.1289893777;TBX4,5:1.10852418687;YY1:1.0863088467;CEBPA,B_DDIT3:1.03130270945;IRF7:0.960603571634;ZNF384:0.927684078406;PBX1:0.899983677645;ATF6:0.831484596367;JUN:0.781573486722;ATF2:0.757224887942;FOXN1:0.646111443522;STAT2,4,6:0.644523613321;ALX1:0.550385646433;ZBTB16:0.492214041265;NFIL3:0.447107204017;POU5F1:0.416265407172;SOX2:0.354865185244;STAT1,3:0.342114094546;HMX1:0.327287196086;AHR_ARNT_ARNT2:0.314421836737;NKX6-1,2:0.314019335428;IKZF2:0.28210645851;TP53:0.277926166682;FOXD3:0.277257336035;TFDP1:0.273059576359;SREBF1,2:0.239407372354;NFY{A,B,C}:0.233905878597;TLX2:0.233662975016;HLF:0.229781594638;TEF:0.188097399763;EGR1..3:0.167361755415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159895862815;NANOG:0.153054486042;HBP1_HMGB_SSRP1_UBTF:0.139302048725;RXR{A,B,G}:0.083235886938;NANOG{mouse}:0.0387158571296;RFX2..5_RFXANK_RFXAP:0.0318808505158;HIF1A:0.0299855082134;NFE2L2:0.0231049084513;SOX17:0.0216799055892;AIRE:-0.0136172295407;NR6A1:-0.048344342829;STAT5{A,B}:-0.108389537153;CRX:-0.122829575864;FOXO1,3,4:-0.125627628348;NFIX:-0.146884611967;MEF2{A,B,C,D}:-0.179058207305;GATA6:-0.185558559324;PAX5:-0.201354937863;TBP:-0.225623755531;SP1:-0.245352827426;SRF:-0.261594729126;PITX1..3:-0.280982430663;HES1:-0.287133325277;FOXQ1:-0.306229818339;FOXP1:-0.320650197561;FOX{F1,F2,J1}:-0.323485901978;RFX1:-0.338698958587;NRF1:-0.340669018113;ARID5B:-0.369681856667;BREu{core}:-0.384017564005;TFCP2:-0.384453194757;ESR1:-0.399326449168;AR:-0.399664029706;ZIC1..3:-0.415373478824;CDC5L:-0.446529145291;PDX1:-0.459205736395;FOXL1:-0.464408748747;GATA4:-0.466210090764;RORA:-0.492367874232;MTF1:-0.492916930992;ZNF148:-0.509350747326;MYOD1:-0.522449023946;ESRRA:-0.546508057835;ZNF143:-0.567904795785;ONECUT1,2:-0.593107625931;RXRA_VDR{dimer}:-0.597137014582;MAFB:-0.599926846549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.600798932981;PRDM1:-0.603265997607;MTE{core}:-0.613376489434;EP300:-0.633666773504;HOX{A4,D4}:-0.646764728234;NR1H4:-0.650228286049;CDX1,2,4:-0.652742164781;HSF1,2:-0.660369976097;CUX2:-0.689033327234;NKX2-2,8:-0.689219011844;NKX2-3_NKX2-5:-0.712125635398;ZFP161:-0.720269954053;TFAP2B:-0.729679015138;MYFfamily:-0.745684994575;HNF4A_NR2F1,2:-0.750999481442;HNF1A:-0.75414644195;MED-1{core}:-0.765755637045;PAX4:-0.777511895665;ZBTB6:-0.788875816194;NR5A1,2:-0.793435953943;PRRX1,2:-0.807550774631;MZF1:-0.822956026789;ZEB1:-0.835840624752;ZNF238:-0.83829785203;NHLH1,2:-0.84368904605;PAX1,9:-0.847916224719;DBP:-0.858515199379;REST:-0.863278430042;PAX6:-0.88171846648;TFAP2{A,C}:-0.886744493018;EN1,2:-0.889410703668;LMO2:-0.896338791002;GFI1:-0.911777975988;RBPJ:-0.962472062181;EVI1:-0.963010511855;OCT4_SOX2{dimer}:-0.978592420807;TGIF1:-0.995898705679;SNAI1..3:-1.00192759262;SOX5:-1.03206603827;XCPE1{core}:-1.03260526614;GTF2A1,2:-1.06448790169;RREB1:-1.06762425182;SMAD1..7,9:-1.0743877834;FOXA2:-1.08838419401;SOX{8,9,10}:-1.09195940763;LEF1_TCF7_TCF7L1,2:-1.095358964;HIC1:-1.10780361328;VSX1,2:-1.12258819638;POU1F1:-1.14280924864;NKX2-1,4:-1.1620028753;POU3F1..4:-1.16596759601;MYBL2:-1.17398051504;MAZ:-1.22278281348;EBF1:-1.23778653663;HAND1,2:-1.25103090706;GLI1..3:-1.2743231497;NR3C1:-1.28895952818;GZF1:-1.30240748464;T:-1.3322460559;GTF2I:-1.38642072323;PATZ1:-1.4174452356;LHX3,4:-1.41800531118;TLX1..3_NFIC{dimer}:-1.51134558398;TEAD1:-1.5213277385;UFEwm:-1.5224585444;NKX3-1:-1.57239607949;POU6F1:-1.57704229194;TOPORS:-1.5798500633;KLF4:-1.6576730142;TFAP4:-1.65837939393;FOXM1:-1.68841452602;GCM1,2:-1.73956976755;ADNP_IRX_SIX_ZHX:-1.75677648609;HOXA9_MEIS1:-1.78605007614;HOX{A5,B5}:-1.83839803329;GFI1B:-1.85192653485;TAL1_TCF{3,4,12}:-1.85579916966;ZNF423:-2.03091406654;HMGA1,2:-2.28687436134;NKX3-2:-2.38743292353;IKZF1:-2.40742095928 | |top_motifs=NFE2:3.48932646508;CREB1:3.42590658672;NFKB1_REL_RELA:3.35514655844;ATF4:3.34250013408;ATF5_CREB3:2.94067251097;RUNX1..3:2.87573280075;FOS_FOS{B,L1}_JUN{B,D}:2.76572978935;BACH2:2.66256580019;SPI1:2.4565426182;ELF1,2,4:2.38764773373;ETS1,2:2.3830370473;bHLH_family:2.27686579962;SPIB:2.20510928966;DMAP1_NCOR{1,2}_SMARC:2.18487884068;PAX8:2.18107099235;BPTF:1.97540918111;FOXP3:1.87606426027;PAX2:1.84457226252;POU2F1..3:1.71275169093;FOX{I1,J2}:1.58122347445;FOX{D1,D2}:1.46555245831;NFATC1..3:1.42132492095;E2F1..5:1.41932691372;IRF1,2:1.39924999786;SPZ1:1.29899905657;FOSL2:1.26656319041;NFE2L1:1.22675134435;MYB:1.15795204474;ALX4:1.14455289166;ELK1,4_GABP{A,B1}:1.13705284776;PPARG:1.1289893777;TBX4,5:1.10852418687;YY1:1.0863088467;CEBPA,B_DDIT3:1.03130270945;IRF7:0.960603571634;ZNF384:0.927684078406;PBX1:0.899983677645;ATF6:0.831484596367;JUN:0.781573486722;ATF2:0.757224887942;FOXN1:0.646111443522;STAT2,4,6:0.644523613321;ALX1:0.550385646433;ZBTB16:0.492214041265;NFIL3:0.447107204017;POU5F1:0.416265407172;SOX2:0.354865185244;STAT1,3:0.342114094546;HMX1:0.327287196086;AHR_ARNT_ARNT2:0.314421836737;NKX6-1,2:0.314019335428;IKZF2:0.28210645851;TP53:0.277926166682;FOXD3:0.277257336035;TFDP1:0.273059576359;SREBF1,2:0.239407372354;NFY{A,B,C}:0.233905878597;TLX2:0.233662975016;HLF:0.229781594638;TEF:0.188097399763;EGR1..3:0.167361755415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159895862815;NANOG:0.153054486042;HBP1_HMGB_SSRP1_UBTF:0.139302048725;RXR{A,B,G}:0.083235886938;NANOG{mouse}:0.0387158571296;RFX2..5_RFXANK_RFXAP:0.0318808505158;HIF1A:0.0299855082134;NFE2L2:0.0231049084513;SOX17:0.0216799055892;AIRE:-0.0136172295407;NR6A1:-0.048344342829;STAT5{A,B}:-0.108389537153;CRX:-0.122829575864;FOXO1,3,4:-0.125627628348;NFIX:-0.146884611967;MEF2{A,B,C,D}:-0.179058207305;GATA6:-0.185558559324;PAX5:-0.201354937863;TBP:-0.225623755531;SP1:-0.245352827426;SRF:-0.261594729126;PITX1..3:-0.280982430663;HES1:-0.287133325277;FOXQ1:-0.306229818339;FOXP1:-0.320650197561;FOX{F1,F2,J1}:-0.323485901978;RFX1:-0.338698958587;NRF1:-0.340669018113;ARID5B:-0.369681856667;BREu{core}:-0.384017564005;TFCP2:-0.384453194757;ESR1:-0.399326449168;AR:-0.399664029706;ZIC1..3:-0.415373478824;CDC5L:-0.446529145291;PDX1:-0.459205736395;FOXL1:-0.464408748747;GATA4:-0.466210090764;RORA:-0.492367874232;MTF1:-0.492916930992;ZNF148:-0.509350747326;MYOD1:-0.522449023946;ESRRA:-0.546508057835;ZNF143:-0.567904795785;ONECUT1,2:-0.593107625931;RXRA_VDR{dimer}:-0.597137014582;MAFB:-0.599926846549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.600798932981;PRDM1:-0.603265997607;MTE{core}:-0.613376489434;EP300:-0.633666773504;HOX{A4,D4}:-0.646764728234;NR1H4:-0.650228286049;CDX1,2,4:-0.652742164781;HSF1,2:-0.660369976097;CUX2:-0.689033327234;NKX2-2,8:-0.689219011844;NKX2-3_NKX2-5:-0.712125635398;ZFP161:-0.720269954053;TFAP2B:-0.729679015138;MYFfamily:-0.745684994575;HNF4A_NR2F1,2:-0.750999481442;HNF1A:-0.75414644195;MED-1{core}:-0.765755637045;PAX4:-0.777511895665;ZBTB6:-0.788875816194;NR5A1,2:-0.793435953943;PRRX1,2:-0.807550774631;MZF1:-0.822956026789;ZEB1:-0.835840624752;ZNF238:-0.83829785203;NHLH1,2:-0.84368904605;PAX1,9:-0.847916224719;DBP:-0.858515199379;REST:-0.863278430042;PAX6:-0.88171846648;TFAP2{A,C}:-0.886744493018;EN1,2:-0.889410703668;LMO2:-0.896338791002;GFI1:-0.911777975988;RBPJ:-0.962472062181;EVI1:-0.963010511855;OCT4_SOX2{dimer}:-0.978592420807;TGIF1:-0.995898705679;SNAI1..3:-1.00192759262;SOX5:-1.03206603827;XCPE1{core}:-1.03260526614;GTF2A1,2:-1.06448790169;RREB1:-1.06762425182;SMAD1..7,9:-1.0743877834;FOXA2:-1.08838419401;SOX{8,9,10}:-1.09195940763;LEF1_TCF7_TCF7L1,2:-1.095358964;HIC1:-1.10780361328;VSX1,2:-1.12258819638;POU1F1:-1.14280924864;NKX2-1,4:-1.1620028753;POU3F1..4:-1.16596759601;MYBL2:-1.17398051504;MAZ:-1.22278281348;EBF1:-1.23778653663;HAND1,2:-1.25103090706;GLI1..3:-1.2743231497;NR3C1:-1.28895952818;GZF1:-1.30240748464;T:-1.3322460559;GTF2I:-1.38642072323;PATZ1:-1.4174452356;LHX3,4:-1.41800531118;TLX1..3_NFIC{dimer}:-1.51134558398;TEAD1:-1.5213277385;UFEwm:-1.5224585444;NKX3-1:-1.57239607949;POU6F1:-1.57704229194;TOPORS:-1.5798500633;KLF4:-1.6576730142;TFAP4:-1.65837939393;FOXM1:-1.68841452602;GCM1,2:-1.73956976755;ADNP_IRX_SIX_ZHX:-1.75677648609;HOXA9_MEIS1:-1.78605007614;HOX{A5,B5}:-1.83839803329;GFI1B:-1.85192653485;TAL1_TCF{3,4,12}:-1.85579916966;ZNF423:-2.03091406654;HMGA1,2:-2.28687436134;NKX3-2:-2.38743292353;IKZF1:-2.40742095928 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12124-128C9;search_select_hide=table117:12124-128C9 | |||
}} | }} |
Latest revision as of 18:31, 4 June 2020
Name: | stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12535 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
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ExpandCAGE Accession numbers |
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ExpandDownload raw sequence, BAM & CTSS |
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12535
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12535
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12535
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12535
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000021 hematopoietic stem cell sample
FF:0000103 mouse sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000103 (mouse sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA