FF:1539-43D8: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	pancreas, neonate N02
Species:	Mouse (Mus musculus)
Library ID:	CNhs11139
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	2 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005663

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11139		CAGE		DRX009062		DRR009936

Accession ID Mm9

Library id		BAM		CTSS
CNhs11139		DRZ001361		DRZ002744

Accession ID Mm10

Library id		BAM		CTSS
CNhs11139		DRZ012711		DRZ014094

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11139

0	0
1	0
10	0
100	0
1000	0.0291
1001	0.0694
1002	0.0189
1003	0.0454
1004	0
1005	0
1006	0.0355
1007	0.0329
1008	0
1009	0.0437
101	0.0295
1010	0.385
1011	-0.108
1012	0
1013	0.311
1014	0.234
1015	-0.0254
1016	0.013
1017	0
1018	0.0243
1019	0
102	0
1020	0
1021	0
1022	0.468
1023	0
1024	0.19
1025	0.0713
1026	0
1027	0
1028	0
1029	0.119
103	0.324
1030	0
1031	0.159
1032	0.0502
1033	0
1034	0.532
1035	0.0134
1036	0.0888
1037	0
1038	0.0118
1039	0.0961
104	0
1040	0.0456
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11139

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0245
MA0003.1	MA0003.1	0.152
MA0004.1	MA0004.1	0.709
MA0006.1	MA0006.1	0.0577
MA0007.1	MA0007.1	0.397
MA0009.1	MA0009.1	0.318
MA0014.1	MA0014.1	0.782
MA0017.1	MA0017.1	0.504
MA0018.2	MA0018.2	2.0309e-7
MA0019.1	MA0019.1	0.487
MA0024.1	MA0024.1	0.0677
MA0025.1	MA0025.1	0.136
MA0027.1	MA0027.1	0.876
MA0028.1	MA0028.1	0.17
MA0029.1	MA0029.1	0.657
MA0030.1	MA0030.1	0.449
MA0031.1	MA0031.1	0.711
MA0035.2	MA0035.2	0.424
MA0038.1	MA0038.1	0.467
MA0039.2	MA0039.2	0.571
MA0040.1	MA0040.1	0.5
MA0041.1	MA0041.1	0.385
MA0042.1	MA0042.1	0.678
MA0043.1	MA0043.1	0.00119
MA0046.1	MA0046.1	5.98311e-21
MA0047.2	MA0047.2	0.00497
MA0048.1	MA0048.1	0.955
MA0050.1	MA0050.1	0.797
MA0051.1	MA0051.1	0.255
MA0052.1	MA0052.1	0.377
MA0055.1	MA0055.1	0.445
MA0057.1	MA0057.1	0.432
MA0058.1	MA0058.1	0.981
MA0059.1	MA0059.1	0.0636
MA0060.1	MA0060.1	0.356
MA0061.1	MA0061.1	0.609
MA0062.2	MA0062.2	0.0102
MA0065.2	MA0065.2	0.163
MA0066.1	MA0066.1	0.449
MA0067.1	MA0067.1	0.0206
MA0068.1	MA0068.1	0.67
MA0069.1	MA0069.1	0.163
MA0070.1	MA0070.1	0.845
MA0071.1	MA0071.1	0.9
MA0072.1	MA0072.1	0.503
MA0073.1	MA0073.1	0.939
MA0074.1	MA0074.1	0.0957
MA0076.1	MA0076.1	0.0475
MA0077.1	MA0077.1	0.922
MA0078.1	MA0078.1	0.967
MA0079.2	MA0079.2	0.773
MA0080.2	MA0080.2	0.013
MA0081.1	MA0081.1	0.0833
MA0083.1	MA0083.1	0.782
MA0084.1	MA0084.1	0.201
MA0087.1	MA0087.1	0.425
MA0088.1	MA0088.1	0.371
MA0090.1	MA0090.1	0.0206
MA0091.1	MA0091.1	3.35585e-5
MA0092.1	MA0092.1	0.171
MA0093.1	MA0093.1	0.77
MA0099.2	MA0099.2	0.00476
MA0100.1	MA0100.1	0.00941
MA0101.1	MA0101.1	0.892
MA0102.2	MA0102.2	0.00617
MA0103.1	MA0103.1	8.41783e-5
MA0104.2	MA0104.2	0.867
MA0105.1	MA0105.1	0.169
MA0106.1	MA0106.1	0.763
MA0107.1	MA0107.1	0.553
MA0108.2	MA0108.2	0.25
MA0111.1	MA0111.1	0.779
MA0112.2	MA0112.2	0.00385
MA0113.1	MA0113.1	0.627
MA0114.1	MA0114.1	0.689
MA0115.1	MA0115.1	0.697
MA0116.1	MA0116.1	0.454
MA0117.1	MA0117.1	0.582
MA0119.1	MA0119.1	0.121
MA0122.1	MA0122.1	0.931
MA0124.1	MA0124.1	0.94
MA0125.1	MA0125.1	0.259
MA0131.1	MA0131.1	0.96
MA0135.1	MA0135.1	0.755
MA0136.1	MA0136.1	3.85569e-4
MA0137.2	MA0137.2	0.359
MA0138.2	MA0138.2	0.819
MA0139.1	MA0139.1	0.19
MA0140.1	MA0140.1	0.0717
MA0141.1	MA0141.1	0.229
MA0142.1	MA0142.1	0.701
MA0143.1	MA0143.1	0.899
MA0144.1	MA0144.1	0.296
MA0145.1	MA0145.1	0.0518
MA0146.1	MA0146.1	0.702
MA0147.1	MA0147.1	0.354
MA0148.1	MA0148.1	1.24068e-4
MA0149.1	MA0149.1	0.631
MA0150.1	MA0150.1	0.284
MA0152.1	MA0152.1	0.58
MA0153.1	MA0153.1	2.68902e-9
MA0154.1	MA0154.1	0.00924
MA0155.1	MA0155.1	0.00869
MA0156.1	MA0156.1	0.00802
MA0157.1	MA0157.1	0.441
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.754
MA0162.1	MA0162.1	0.324
MA0163.1	MA0163.1	5.9987e-4
MA0164.1	MA0164.1	0.487
MA0258.1	MA0258.1	0.0636
MA0259.1	MA0259.1	0.852

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11139

Novel motif	Logo	P-value
1	1	0.164
10	10	0.217
100	100	0.293
101	101	0.493
102	102	0.73
103	103	0.231
104	104	0.327
105	105	0.973
106	106	0.0091
107	107	0.093
108	108	0.757
109	109	0.0813
11	11	0.417
110	110	0.0559
111	111	0.575
112	112	0.401
113	113	0.128
114	114	0.385
115	115	0.301
116	116	0.258
117	117	0.359
118	118	0.514
119	119	0.233
12	12	0.0624
120	120	0.471
121	121	0.0984
122	122	0.9
123	123	0.611
124	124	0.344
125	125	0.33
126	126	0.0716
127	127	0.385
128	128	0.0298
129	129	0.436
13	13	3.49131e-5
130	130	0.42
131	131	0.228
132	132	0.46
133	133	0.0884
134	134	0.256
135	135	0.905
136	136	0.323
137	137	0.0446
138	138	0.00798
139	139	0.601
14	14	0.569
140	140	0.074
141	141	0.0446
142	142	0.545
143	143	0.868
144	144	0.626
145	145	0.0737
146	146	0.551
147	147	0.16
148	148	0.0777
149	149	0.322
15	15	0.832
150	150	0.318
151	151	0.772
152	152	0.028
153	153	0.788
154	154	0.98
155	155	0.988
156	156	0.00343
157	157	0.0972
158	158	0.711
159	159	0.431
160	160	0.0533
161	161	0.832
162	162	0.333
163	163	0.898
164	164	0.487
165	165	0.636
166	166	0.545
167	167	0.543
168	168	0.3
169	169	0.00665
17	17	0.169
18	18	0.362
19	19	0.00851
2	2	0.511
20	20	0.604
21	21	0.5
22	22	0.197
23	23	0.719
24	24	0.186
25	25	0.722
26	26	7.0759e-4
27	27	0.683
28	28	0.28
29	29	0.929
3	3	0.385
30	30	0.867
31	31	0.353
32	32	0.0839
33	33	0.63
34	34	0.933
35	35	0.594
36	36	0.623
37	37	0.0577
38	38	0.539
39	39	0.0199
4	4	0.338
40	40	0.67
41	41	0.0694
42	42	0.35
43	43	0.303
44	44	0.771
45	45	0.945
46	46	0.135
47	47	0.711
48	48	0.833
49	49	0.456
5	5	0.87
50	50	0.211
51	51	0.577
52	52	0.12
53	53	0.85
54	54	0.903
55	55	0.435
56	56	0.351
57	57	0.854
58	58	0.576
59	59	0.0303
6	6	0.851
60	60	0.0737
61	61	0.227
62	62	0.887
63	63	0.141
64	64	0.7
65	65	0.23
66	66	0.32
67	67	0.454
68	68	0.475
69	69	0.512
7	7	0.0911
70	70	0.997
71	71	0.0134
72	72	0.704
73	73	0.142
74	74	0.368
75	75	0.695
76	76	0.414
77	77	0.0783
78	78	0.206
79	79	0.0256
8	8	0.0307
80	80	0.379
81	81	0.854
82	82	0.278
83	83	0.87
84	84	0.028
85	85	0.185
86	86	0.366
87	87	0.492
88	88	0.133
89	89	0.303
9	9	0.55
90	90	0.4
91	91	0.363
92	92	0.26
93	93	0.563
94	94	0.256
95	95	0.958
96	96	0.382
97	97	0.0558
98	98	0.667
99	99	0.112

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11139

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011254 mouse pancreas- neonate N02 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000307 (mouse neonate N2 sample)
0011254 (mouse pancreas- neonate N02 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008925
+|DRA_sample_Accession=CAGE@SAMD00005663
-|accession_numbers=CAGE;DRX009062;DRR009936;DRZ001361;DRZ002744
+|accession_numbers=CAGE;DRX009062;DRR009936;DRZ001361;DRZ002744;DRZ012711;DRZ014094
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.85!705.15!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.03!106.95!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!1.93!120.85!Bhlha15;;chr9:74709695..74709722,+!p1@Onecut1!1.82!64.53!Onecut1;;chr1:138857076..138857105,-!p1@Nr5a2!1.51!31.73!Nr5a2;;chr11:5420655..5420659,+!p3@Xbp1!1.47!28.52!Xbp1;;chr2:103143336..103143367,-!p1@Ehf!1.41!39.93!Ehf;;chr2:163332558..163332596,+!p2@Hnf4a!1.41!24.95!Hnf4a;;chr17:27865882..27865901,-!p1@Spdef!1.39!23.53!Spdef;;chr7:19608891..19608895,-!p1@Foxa3!1.38!29.59!Foxa3;;chr11:83664365..83664383,+!p1@Hnf1b!1.36!22.10!Hnf1b;;chr2:79296783..79296801,-!p1@Neurod1!1.31!19.61!Neurod1;;chr5:148081686..148081715,+!p1@Pdx1!1.31!19.25!Pdx1;;chr14:63864056..63864102,-!p1@Gata4!1.27!30.66!Gata4;;chr7:6649134..6649167,-!p1@Zim1!1.24!86.99!Zim1;;chr4:133109285..133109308,+!p1@Nr0b2!1.22!15.69!Nr0b2;;chr2:147871627..147871641,-!p1@Foxa2!1.22!15.69!Foxa2;;chr10:88969376..88969395,-!p1@Nr1h4!1.15!13.19!Nr1h4;;chr5:148081722..148081744,+!p2@Pdx1!1.13!12.48!Pdx1;;chr8:59799772..59799789,+!p1@Hand2!1.12!34.94!Hand2;;chr1:138857112..138857130,-!p7@Nr5a2!1.12!12.12!Nr5a2;;chr1:138857048..138857071,-!p2@Nr5a2!1.08!11.05!Nr5a2;;chr11:121380594..121380609,-!p2@Zfp750!1.07!18.54!Zfp750;;chr14:63890491..63890516,-!p2@Gata4!1.07!10.69!Gata4;;chr9:96620459..96620478,-!p9@Zbtb38!1.05!11.41!Zbtb38;;chr14:63890545..63890560,-!p5@Gata4!1.01!9.27!Gata4;;chr11:5420954..5420969,+!p2@Xbp1!0.98!110.16!Xbp1;;chr5:148081667..148081678,+!p3@Pdx1!0.98!8.56!Pdx1;;chr14:63890519..63890539,-!p3@Gata4!0.96!8.20!Gata4;;chr3:30039329..30039355,-!p5@Mecom!0.96!8.20!Mecom;;chr5:135582751..135582788,+!p1@Mlxipl!0.95!32.44!Mlxipl;;chr2:104966766..104966786,+!p1@Wt1!0.93!12.12!Wt1;;chr13:117099847..117099907,-!p1@Isl1!0.92!13.90!Isl1;;chr5:104121453..104121479,+!p4@Aff1!0.90!33.51!Aff1;;chr2:147019977..147019985,-!p2@Nkx2-2!0.87!6.42!Nkx2-2;;chr2:103143315..103143328,-!p2@Ehf!0.85!6.06!Ehf;;chr11:98605517..98605539,+!p5@Thra!0.84!8.91!Thra;;chr9:74714303..74714318,+!p2@Onecut1!0.83!5.70!Onecut1;;chr14:63890459..63890484,-!p4@Gata4!0.83!5.70!Gata4;;chr10:12810631..12810649,+!p1@Plagl1!0.82!157.93!Plagl1;;chr1:138846009..138846038,-!p3@Nr5a2!0.82!6.42!Nr5a2;;chr2:115888250..115888298,-!p10@Meis2!0.81!6.77!Meis2;;chr5:125538737..125538781,-!p2@Ncor2!0.80!20.32!Ncor2;;chr13:83643159..83643226,+!p3@Mef2c!0.80!5.35!Mef2c;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.80!5.35!Ppard;;chr19:37509324..37509337,+!p1@Hhex!0.79!39.93!Hhex;;chr3:30408603..30408668,-!p1@Mecom!0.78!12.48!Mecom;;chr2:105509045..105509071,+!p1@Pax6!0.78!4.99!Pax6;;chr1:136186574..136186592,+!p1@Myog!0.78!4.99!Myog;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.48!Osr2;;chr16:43236133..43236154,+!p17@Zbtb20!0.75!5.35!Zbtb20;;chr14:63890691..63890718,-!p8@Gata4!0.75!4.63!Gata4;;chr9:74709682..74709691,+!p3@Onecut1!0.75!4.63!Onecut1;;chr2:103264213..103264233,+!p1@Elf5!0.75!4.63!Elf5;;chr11:121380640..121380655,-!p1@Zfp750!0.74!7.84!Zfp750;;chr11:106128936..106128955,-!p4@Smarcd2!0.74!5.35!Smarcd2;;chr1:165243792..165243808,-!p1@Prrx1!0.73!16.76!Prrx1;;chr3:30408384..30408431,-!p4@Mecom!0.73!5.70!Mecom;;chr4:154010918..154010931,-!p1@Prdm16!0.72!13.55!Prdm16;;chr2:147012125..147012149,-!p1@Nkx2-2!0.72!4.28!Nkx2-2;;chr19:43686789..43686811,+!p1@Nkx2-3!0.72!4.28!Nkx2-3;;chr14:63890660..63890687,-!p7@Gata4!0.72!4.28!Gata4;;chr19:10315179..10315241,-!p1@Gm98!0.71!48.13!Gm98;;chr1:138845748..138845766,-!p4@Nr5a2!0.70!5.35!Nr5a2;;chr6:51382677..51382783,+!p1@Nfe2l3!0.69!11.05!Nfe2l3;;chr10:80555320..80555378,-!p1@Creb3l3!0.69!4.63!Creb3l3;;chr7:52472041..52472065,+!p2@Tead2!0.69!4.63!Tead2;;chr3:29911808..29911833,-!p8@Mecom!0.69!3.92!Mecom;;chr19:28754692..28754757,-!p1@Glis3!0.68!17.82!Glis3;;chr10:22539932..22539956,-!p1@Tcf21!0.68!11.05!Tcf21;;chr3:94176733..94176794,+!p1@Rorc!0.66!31.73!Rorc;;chr2:168415815..168415872,-!p1@Nfatc2!0.66!22.10!Nfatc2;;chr6:52114821..52114828,-!p1@Hoxa2!0.66!5.70!Hoxa2;;chr7:119885539..119885574,+!p3@Tead1!0.66!3.56!Tead1;;chr2:147012101..147012118,-!p3@Nkx2-2!0.66!3.56!Nkx2-2;;chr2:105003277..105003280,+!p5@Wt1!0.66!3.56!Wt1;;chr2:147871948..147871977,-!p3@Foxa2!0.66!3.56!Foxa2;;chr13:48758358..48758415,+!p2@Barx1!0.66!3.56!Barx1;;chr18:11052606..11052633,+!p4@Gata6!0.64!9.63!Gata6;;chr12:37835120..37835133,+!p2@Meox2!0.63!4.99!Meox2;;chr7:6683123..6683142,-!p1@Peg3!0.62!198.57!Peg3;;chr12:9581262..9581282,+!p1@Osr1!0.62!45.28!Osr1;;chr12:37835141..37835194,+!p1@Meox2!0.62!11.41!Meox2;;chr18:7004715..7004731,-!p1@Mkx!0.62!8.56!Mkx;;chr4:87452200..87452229,-!p2@Mllt3!0.62!7.49!Mllt3;;chr2:169458799..169458832,+!p5@Tshz2!0.62!5.70!Tshz2;;chr19:55972767..55972779,+!p20@Tcf7l2!0.62!3.21!Tcf7l2;;chr6:30908793..30908815,-!p1@Klf14!0.62!3.21!Klf14;;chr3:3508024..3508069,+!p2@Hnf4g!0.62!3.21!Hnf4g;;chr13:48758276..48758291,+!p1@Barx1!0.62!3.21!Barx1;;chr11:83664334..83664353,+!p2@Hnf1b!0.62!3.21!Hnf1b;;chr11:112643496..112643562,+!p1@Sox9!0.61!137.61!Sox9;;chr2:91864661..91864686,-!p1@Creb3l1!0.61!81.28!Creb3l1;;chr3:30408674..30408716,-!p2@Mecom!0.60!5.35!Mecom;;chr8:90328310..90328362,-!p3@Zfp423!0.60!3.56!Zfp423;;chr7:52471143..52471186,+!p1@Tead2!0.59!37.08!Tead2;;chr18:11052642..11052659,+!p1@Gata6!0.59!17.47!Gata6;;chr16:43235969..43235989,+!p20@Zbtb20!0.59!2.85!Zbtb20;;chr2:147872790..147872821,-!p2@Foxa2!0.59!2.85!Foxa2;;chr1:138846079..138846103,-!p6@Nr5a2!0.59!2.85!Nr5a2;;chr10:51397572..51397595,+!p1@Rfx6!0.59!2.85!Rfx6;;chr1:194979315..194979359,+!p1@Irf6!0.58!20.68!Irf6;;chr18:69681439..69681456,+!p7@Tcf4!0.58!8.20!Tcf4;;chr4:154010409..154010466,-!p2@Prdm16!0.58!7.49!Prdm16;;chr11:18918820..18918831,-!p4@Meis1!0.58!6.06!Meis1;;chr11:121380611..121380625,-!p3@Zfp750!0.58!3.56!Zfp750;;chr11:5420973..5420992,+!p1@Xbp1!0.57!360.42!Xbp1;;chr8:124806048..124806094,+!p1@Zfpm1!0.57!31.02!Zfpm1;;chr2:120365588..120365602,-!p2@Zfp106!0.57!4.99!Zfp106;;chr6:146744595..146744613,+!p2@Arntl2!0.57!4.99!Arntl2;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.57!4.63!Mesp2;;chr18:11052456..11052477,+!p3@Gata6!0.56!9.63!Gata6;;chr2:146047829..146047847,+!p1@Insm1!0.56!5.35!Insm1;;chr2:115890469..115890485,-!p7@Meis2!0.56!4.63!Meis2;;chr6:52154414..52154462,-!p1@Hoxa5!0.56!3.92!Hoxa5;;chr1:191994550..191994623,-!p1@Prox1!0.55!22.10!Prox1;;chr1:137155026..137155042,-!p1@Elf3!0.55!18.18!Elf3;;chr5:104121391..104121450,+!p3@Aff1!0.55!16.40!Aff1;;chr7:148513409..148513455,-!p2@Deaf1!0.55!14.62!Deaf1;;chr8:73905344..73905381,-!p2@Nr2f6!0.55!7.13!Nr2f6;;chr2:115890953..115890974,-!p6@Meis2!0.55!4.28!Meis2;;chr14:22807083..22807104,-!p1@Zfp503!0.54!54.54!Zfp503;;chr9:63605740..63605771,-!p1@Smad3!0.54!45.28!Smad3;;chr6:90412582..90412601,+!p1@Klf15!0.54!14.26!Klf15;;chr4:97444537..97444555,+!p8@Nfia!0.54!7.13!Nfia;;chr7:17642177..17642223,-!p3@Hif3a!0.54!2.50!Hif3a;;chr9:74714281..74714296,+!p5@Onecut1!0.54!2.50!Onecut1;;chr8:87425854..87425891,+!p1@Klf1!0.54!2.50!Klf1;;chr2:104966874..104966907,+!p2@Wt1!0.54!2.50!Wt1;;chr1:138850177..138850182,-!p11@Nr5a2!0.54!2.50!Nr5a2;;chr18:80904854..80904919,-!p2@Nfatc1!0.53!36.72!Nfatc1;;chr4:154010940..154010962,-!p3@Prdm16!0.53!6.06!Prdm16;;chr14:79915425..79915501,+!p1@Elf1!0.52!26.02!Elf1;;chr1:93698030..93698064,+!p1@Twist2!0.52!5.35!Twist2;;chr2:91864449..91864492,-!p3@Creb3l1!0.52!4.28!Creb3l1;;chr10:114821444..114821491,-!p1@Thap2!0.51!23.17!Thap2;;chr13:56804865..56804898,+!p3@Smad5!0.51!7.13!Smad5;;chr2:169458519..169458555,+!p2@Tshz2!0.50!11.05!Tshz2;;chr6:72849280..72849297,-!p6@Kcmf1!0.50!4.99!Kcmf1;;chr4:82151500..82151505,-!p11@Nfib!0.50!2.85!Nfib;;chr3:99057677..99057730,+!p2@Tbx15!0.50!2.14!Tbx15;;chr5:102094214..102094230,-!p1@Nkx6-1!0.50!2.14!Nkx6-1;;chr5:115421065..115421088,-!p1@Hnf1a!0.50!2.14!Hnf1a;;chr2:147872074..147872079,-!p4@Foxa2!0.50!2.14!Foxa2;;chr2:104966662..104966673,+!p4@Wt1!0.50!2.14!Wt1;;chr2:104966933..104966966,+!p3@Wt1!0.50!2.14!Wt1;;chr17:14011485..14011507,+!p2@Mllt4!0.50!2.14!Mllt4;;chr12:30213247..30213333,+!p1@Myt1l!0.50!2.14!Myt1l;;chr15:75578748..75578752,-!p1@Mafa!0.50!2.14!Mafa;;chr11:69468531..69468557,+!p1@Sox15!0.50!2.14!Sox15;;chr10:61595830..61595846,+!p1@Neurog3!0.50!2.14!Neurog3;;chr11:18918959..18918976,-!p2@Meis1!0.48!36.72!Meis1;;chr14:64562503..64562524,+!p1@Sox7!0.48!15.69!Sox7;;chr18:11052485..11052508,+!p2@Gata6!0.48!7.13!Gata6;;chr15:37162796..37162828,+!p1@Grhl2!0.48!3.92!Grhl2;;chr11:96153767..96153822,+!p1@Hoxb6!0.48!3.56!Hoxb6;;chr4:3865501..3865548,-!p1@Plag1!0.47!13.19!Plag1;;chr9:32443818..32443854,+!p2@Ets1!0.47!11.41!Ets1;;chr12:37835203..37835218,+!p3@Meox2!0.47!2.50!Meox2;;chr1:138846047..138846074,-!p5@Nr5a2!0.47!2.14!Nr5a2;;chr18:74375772..74375799,+!p2@Cxxc1!0.46!7.13!Cxxc1;;chr4:119486912..119486954,+!p3@Hivep3!0.46!3.92!Hivep3;;chr10:88996336..88996380,-!p2@Nr1h4!0.46!2.50!Nr1h4;;chr19:55816770..55816793,+!p2@Tcf7l2!0.45!21.75!Tcf7l2;;chr2:115891454..115891471,-!p3@Meis2!0.45!7.13!Meis2;;chr7:119822828..119822839,+!p4@Tead1!0.45!6.77!Tead1;;chr12:9581284..9581303,+!p2@Osr1!0.45!4.28!Osr1;;chr12:9581317..9581333,+!p3@Osr1!0.45!3.21!Osr1;;chr14:67853457..67853482,+!p2@Ebf2!0.45!2.85!Ebf2;;chr6:52154386..52154407,-!p2@Hoxa5!0.45!2.50!Hoxa5;;chr14:65977498..65977528,+!p1@Zfp395!0.44!16.04!Zfp395;;chr16:22439654..22439676,-!p2@Etv5!0.44!14.26!Etv5;;chr8:87225329..87225396,+!p1@Lyl1!0.44!8.91!Lyl1;;chrX:35543006..35543019,+!p2@Zbtb33!0.44!6.06!Zbtb33;;chr2:77357622..77357704,-!p1@Zfp385b!0.44!6.06!Zfp385b;;chr2:169458496..169458516,+!p6@Tshz2!0.44!4.63!Tshz2;;chr11:18918434..18918489,-!p3@Meis1!0.44!3.21!Meis1;;chr5:104183579..104183600,+!p9@Aff1!0.44!2.14!Aff1;;chr19:28754622..28754633,-!p4@Glis3!0.44!2.14!Glis3;;chr10:106931775..106931798,-!p1@Myf6!0.44!1.78!Myf6;;chr11:96164821..96164865,+!p1@Hoxb5!0.44!1.78!Hoxb5;;chr5:115420882..115420896,-!p3@Hnf1a!0.44!1.78!Hnf1a;;chr7:108966820..108966835,+!p1@Phox2a!0.44!1.78!Phox2a;;chr5:42155788..42155800,-!p1@Nkx3-2!0.44!1.78!Nkx3-2;;chr1:138846117..138846129,-!p8@Nr5a2!0.44!1.78!Nr5a2;;chr19:55972753..55972764,+!p33@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f1;;chr9:51021788..51021802,+!p1@Pou2af1!0.16!0.71!Pou2af1;;chr9:96159427..96159432,+!p11@Tfdp2!0.16!0.71!Tfdp2;;chr2:156666435..156666476,+!p4@Tgif2!0.16!0.71!Tgif2;;chr1:14746065..14746079,-!p1@Msc!0.16!0.71!Msc;;chr2:180377386..180377462,-!p1@Tcfl5!0.16!0.71!Tcfl5;;chr13:29045174..29045188,-!p7@Sox4!0.16!0.71!Sox4;;chr5:125538703..125538715,-!p5@Ncor2!0.16!0.71!Ncor2;;chr9:72122773..72122820,+!p1@Zfp280d!0.15!33.87!Zfp280d;;chr8:87324243..87324277,-!p1@Nfix!0.15!30.30!Nfix;;chr5:53981912..53981942,+!p1@Rbpj!0.15!24.24!Rbpj;;chr5:46248712..46248750,-!p1@Lcorl!0.15!18.89!Lcorl;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.15!15.33!Zzz3;;chr4:87679232..87679277,-!p1@Mllt3!0.15!14.26!Mllt3;;chr16:98183746..98183801,-!p1@Zfp295!0.15!13.55!Zfp295;;chr19:28085676..28085711,-!p2@Rfx3!0.15!7.13!Rfx3;;chr6:133985657..133985707,+!p3@Etv6!0.15!6.42!Etv6;;chr17:35031460..35031518,+!p1@Zbtb12!0.15!5.70!Zbtb12;;chr15:76709732..76709764,+!p1@Zfp7!0.15!5.35!Zfp7;;chr13:64254457..64254497,-!p1@Zfp367!0.15!4.99!Zfp367;;chr13:21545538..21545569,-!p2@Zfp187!0.15!4.99!Zfp187;;chr2:73730619..73730630,-!p4@Atf2,p4@LOC100047997!0.15!4.63!Atf2;;chr18:69505414..69505465,+!p6@Tcf4!0.15!3.92!Tcf4;;chr17:45570455..45570479,-!p2@Cdc5l!0.15!3.92!Cdc5l;;chr3:89197551..89197606,-!p2@Zbtb7b!0.15!3.56!Zbtb7b;;chrX:45807489..45807502,-!p2@Elf4!0.15!3.21!Elf4;;chr4:148178559..148178603,+!p1@Casz1!0.15!2.85!Casz1;;chr8:118230894..118230918,-!p5@Maf!0.15!2.85!Maf;;chr15:78994907..78994926,-!p1@Sox10!0.15!2.50!Sox10;;chr5:34530277..34530292,-!p3@Mxd4!0.15!2.50!Mxd4;;chr4:128483731..128483757,-!p4@Zfp362!0.15!2.14!Zfp362;;chr17:13897299..13897342,+!p3@Mllt4!0.15!2.14!Mllt4;;chr6:39068181..39068206,-!p3@Parp12!0.15!1.78!Parp12;;chr5:143942477..143942493,-!p2@Rbak!0.15!1.78!Rbak;;chrX:45947787..45947812,-!p3@Zfp280c!0.15!1.78!Zfp280c;;chr11:5761979..5761992,+!p2@Aebp1!0.15!1.78!Aebp1;;chr2:37286328..37286341,-!p3@Zbtb6!0.15!1.78!Zbtb6;;chr5:24108047..24108106,-!p3@Smarcd3!0.15!1.43!Smarcd3;;chr15:61818965..61819046,+!p3@Myc!0.15!1.43!Myc;;chr9:122775033..122775044,-!p2@Zfp445!0.15!1.43!Zfp445;;chr7:28516464..28516475,+!p3@Zfp60!0.15!1.07!Zfp60;;chr9:21420812..21420815,+!p6@Smarca4!0.15!1.07!Smarca4;;chr13:64254502..64254515,-!p3@Zfp367!0.15!1.07!Zfp367;;chr7:123174485..123174514,-!p6@Sox6!0.15!0.71!Sox6;;chr6:15135639..15135655,+!p9@Foxp2!0.15!0.71!Foxp2;;chr7:123177120..123177138,-!p10@Sox6!0.15!0.71!Sox6;;chr18:61336630..61336641,-!p3@Hmgxb3!0.15!0.71!Hmgxb3;;chr2:168427252..168427273,-!p2@Nfatc2!0.15!0.71!Nfatc2;;chr2:17976799..17976829,+!p5@Mllt10!0.15!0.71!Mllt10;;chr9:20385789..20385803,+!p5@Zfp846!0.15!0.71!Zfp846;;chr3:99057269..99057306,+!p1@Tbx15!0.15!0.71!Tbx15;;chr3:130815703..130815721,+!p2@Lef1!0.15!0.71!Lef1;;chr2:91034924..91034946,-!p2@Nr1h3!0.15!0.71!Nr1h3;;chr10:80809447..80809515,-!p5@Hmg20b!0.15!0.71!Hmg20b;;chr10:44178575..44178590,-!p5@Prdm1!0.15!0.71!Prdm1;;chr11:102177974..102177992,-!p17@Ubtf!0.15!0.71!Ubtf;;chr10:107769219..107769226,+!p5@Pawr!0.15!0.71!Pawr;;chr6:131338435..131338482,-!p1@Csda!0.14!118.71!Csda;;chr11:102180255..102180318,-!p1@Ubtf!0.14!27.45!Ubtf;;chr12:4484016..4484074,-!p1@Ncoa1!0.14!19.96!Ncoa1;;chr3:51144550..51144603,-!p2@Elf2!0.14!18.18!Elf2;;chr1:133904183..133904211,+!p1@Elk4!0.14!9.98!Elk4;;chr7:28516417..28516460,+!p1@Zfp60!0.14!9.98!Zfp60;;chr3:32409487..32409563,+!p1@Zfp639!0.14!8.56!Zfp639;;chr1:170362242..170362256,-!p3@Pbx1!0.14!8.20!Pbx1;;chr6:29476690..29476724,+!p1@Irf5!0.14!4.99!Irf5;;chr6:115803364..115803407,-!p1@Mbd4!0.14!4.63!Mbd4;;chr14:22807107..22807119,-!p2@Zfp503!0.14!4.63!Zfp503;;chr8:4613182..4613207,+!p2@Zfp958!0.14!4.28!Zfp958;;chr14:18493386..18493464,+!p1@Thrb!0.14!3.92!Thrb;;chr13:15555496..15555544,+!p1@Gli3!0.14!3.56!Gli3;;chr17:21520689..21520730,+!p1@Zfp677!0.14!3.56!Zfp677;;chr15:50721616..50721632,-!p4@Trps1!0.14!2.50!Trps1;;chr10:127896315..127896333,+!p2@Smarcc2!0.14!2.50!Smarcc2;;chr9:32349240..32349276,-!p2@Fli1!0.14!2.14!Fli1;;chr8:4613211..4613224,+!p3@Zfp958!0.14!1.78!Zfp958;;chr16:43619057..43619078,+!p8@Zbtb20!0.14!1.78!Zbtb20;;chr5:32438894..32438908,+!p2@Fosl2!0.14!1.78!Fosl2;;chr5:65213356..65213412,+!p6@Klf3!0.14!1.78!Klf3;;chr7:25862363..25862382,+!p2@Zfp574!0.14!1.43!Zfp574;;chr8:72356384..72356434,+!p2@Pbx4!0.14!1.07!Pbx4;;chrX:103070839..103070856,-!p4@Atrx!0.14!1.07!Atrx;;chr7:37483231..37483263,+!p2@Tshz3!0.14!1.07!Tshz3;;chr14:17407549..17407575,-!p3@Rarb!0.14!1.07!Rarb;;chr14:79915502..79915514,+!p4@Elf1!0.14!1.07!Elf1;;chr13:83663600..83663625,+!p6@Mef2c!0.14!1.07!Mef2c;;chr12:85534895..85534915,-!p8@C130039O16Rik!0.14!1.07!C130039O16Rik;;chr2:151969288..151969294,+!p1@Tcf15!0.14!1.07!Tcf15;;chr4:13670626..13670657,+!p5@Runx1t1!0.14!1.07!Runx1t1;;chr10:127176667..127176679,+!p2@Zbtb39!0.14!1.07!Zbtb39;;chr10:5636374..5636421,-!p1@Esr1!0.14!0.71!Esr1;;chr11:98614826..98614845,+!p9@Thra!0.14!0.71!Thra;;chr14:98568683..98568698,-!p6@Dach1!0.14!0.71!Dach1;;chr13:30077917..30077928,-!p4@E2f3!0.14!0.71!E2f3;;chr6:145813964..145813994,-!p3@Bhlhe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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs11139
-|library_id_phase_based=1:CNhs11139
+|library_id_phase_based=2:CNhs11139
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1539
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1539
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N02.CNhs11139.1539-43D8.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N02.CNhs11139.1539-43D8.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N02.CNhs11139.1539-43D8.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N02.CNhs11139.1539-43D8.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N02.CNhs11139.1539-43D8.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, neonate N02
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11139,LSID735,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.296865426839357,0,0,0,0,0,0.15878093666118,0,0.083771173973537,0,0,0.879422136799978,0,0,0,0,0,0,-0.0594743921171746,0,0,0,0,0,0.1324189587654,1.27473196081693,0,0,0,0,0,0,0.244177226658729,0,0,0,0.1324189587654,0,0.106541054762267,0,-0.0302360116091054,0.616306470752217,-0.0361126043557475,0,0,0,0,0,0,0,0,0,0,0.233756033654604,0,0.318883371711534,0,0,0,0,-0.0428469550828748,0,0.1279573735694,0,0,0.0457557705223541,0.21410183869592,0.466846001628125,0.338698096651352,0.0958262497685465,0,0.0560682221626229,0.0396265500143932,0.0390249904961746,0.233756033654604,0,0,0.00911849055935092,0.063523407030474,0.237032185418186,0,0,0,0,0,0,0.233179390175948,0.411059934701142,0.00500690472494931,0,0,0,0,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1539-43D8;search_select_hide=table117:1539-43D8
 }}

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FF:1539-43D8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs11139

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0