FF:1555-45E2: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	pancreas, neonate N25
Species:	Mouse (Mus musculus)
Library ID:	CNhs11094
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	25 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005388

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11094		CAGE		DRX009064		DRR009938

Accession ID Mm9

Library id		BAM		CTSS
CNhs11094		DRZ001363		DRZ002746

Accession ID Mm10

Library id		BAM		CTSS
CNhs11094		DRZ012713		DRZ014096

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11094

0	0
1	0
10	0
100	0
1000	0
1001	-0.00135
1002	-0.116
1003	-0.175
1004	0
1005	-0.0389
1006	0
1007	-0.0703
1008	0
1009	-0.0614
101	-0.0153
1010	0
1011	-0.131
1012	0
1013	0.663
1014	-0.0874
1015	-0.153
1016	-0.379
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.745
1023	0
1024	0
1025	0
1026	0
1027	0
1028	0
1029	-0.176
103	-0.0576
1030	0
1031	-0.308
1032	-0.028
1033	-0.0665
1034	0.965
1035	0
1036	-0.164
1037	0
1038	-0.00847
1039	0.276
104	0
1040	-0.121
1041	0.493

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11094

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.293
MA0003.1	MA0003.1	0.481
MA0004.1	MA0004.1	0.179
MA0006.1	MA0006.1	0.19
MA0007.1	MA0007.1	0.371
MA0009.1	MA0009.1	0.964
MA0014.1	MA0014.1	0.326
MA0017.1	MA0017.1	0.12
MA0018.2	MA0018.2	0.00996
MA0019.1	MA0019.1	0.752
MA0024.1	MA0024.1	0.00496
MA0025.1	MA0025.1	0.606
MA0027.1	MA0027.1	0.837
MA0028.1	MA0028.1	0.685
MA0029.1	MA0029.1	0.693
MA0030.1	MA0030.1	0.889
MA0031.1	MA0031.1	0.663
MA0035.2	MA0035.2	0.0239
MA0038.1	MA0038.1	0.764
MA0039.2	MA0039.2	0.0861
MA0040.1	MA0040.1	0.368
MA0041.1	MA0041.1	0.108
MA0042.1	MA0042.1	0.61
MA0043.1	MA0043.1	0.0147
MA0046.1	MA0046.1	1.80619e-8
MA0047.2	MA0047.2	0.00306
MA0048.1	MA0048.1	0.594
MA0050.1	MA0050.1	0.802
MA0051.1	MA0051.1	0.689
MA0052.1	MA0052.1	0.00288
MA0055.1	MA0055.1	0.449
MA0057.1	MA0057.1	0.145
MA0058.1	MA0058.1	0.167
MA0059.1	MA0059.1	0.00433
MA0060.1	MA0060.1	0.00483
MA0061.1	MA0061.1	0.982
MA0062.2	MA0062.2	0.913
MA0065.2	MA0065.2	0.0358
MA0066.1	MA0066.1	0.707
MA0067.1	MA0067.1	0.0999
MA0068.1	MA0068.1	0.292
MA0069.1	MA0069.1	0.519
MA0070.1	MA0070.1	0.812
MA0071.1	MA0071.1	0.173
MA0072.1	MA0072.1	0.235
MA0073.1	MA0073.1	0.349
MA0074.1	MA0074.1	0.0926
MA0076.1	MA0076.1	0.901
MA0077.1	MA0077.1	0.579
MA0078.1	MA0078.1	0.474
MA0079.2	MA0079.2	0.958
MA0080.2	MA0080.2	0.77
MA0081.1	MA0081.1	0.758
MA0083.1	MA0083.1	0.00603
MA0084.1	MA0084.1	0.484
MA0087.1	MA0087.1	0.014
MA0088.1	MA0088.1	0.0127
MA0090.1	MA0090.1	0.144
MA0091.1	MA0091.1	0.00343
MA0092.1	MA0092.1	0.212
MA0093.1	MA0093.1	0.196
MA0099.2	MA0099.2	0.934
MA0100.1	MA0100.1	0.0636
MA0101.1	MA0101.1	0.762
MA0102.2	MA0102.2	0.0847
MA0103.1	MA0103.1	5.97391e-6
MA0104.2	MA0104.2	0.206
MA0105.1	MA0105.1	0.67
MA0106.1	MA0106.1	0.231
MA0107.1	MA0107.1	0.312
MA0108.2	MA0108.2	0.0271
MA0111.1	MA0111.1	0.94
MA0112.2	MA0112.2	1.87835e-4
MA0113.1	MA0113.1	0.844
MA0114.1	MA0114.1	0.231
MA0115.1	MA0115.1	0.749
MA0116.1	MA0116.1	0.625
MA0117.1	MA0117.1	0.254
MA0119.1	MA0119.1	0.168
MA0122.1	MA0122.1	0.86
MA0124.1	MA0124.1	0.254
MA0125.1	MA0125.1	0.274
MA0131.1	MA0131.1	0.931
MA0135.1	MA0135.1	0.202
MA0136.1	MA0136.1	0.348
MA0137.2	MA0137.2	7.13918e-4
MA0138.2	MA0138.2	0.965
MA0139.1	MA0139.1	0.494
MA0140.1	MA0140.1	0.0127
MA0141.1	MA0141.1	0.0097
MA0142.1	MA0142.1	0.805
MA0143.1	MA0143.1	0.808
MA0144.1	MA0144.1	0.00658
MA0145.1	MA0145.1	0.022
MA0146.1	MA0146.1	0.195
MA0147.1	MA0147.1	0.0733
MA0148.1	MA0148.1	3.73794e-5
MA0149.1	MA0149.1	0.00272
MA0150.1	MA0150.1	0.145
MA0152.1	MA0152.1	0.809
MA0153.1	MA0153.1	0.00129
MA0154.1	MA0154.1	0.0246
MA0155.1	MA0155.1	0.681
MA0156.1	MA0156.1	0.943
MA0157.1	MA0157.1	0.335
MA0159.1	MA0159.1	0.0698
MA0160.1	MA0160.1	0.0504
MA0162.1	MA0162.1	0.38
MA0163.1	MA0163.1	0.00606
MA0164.1	MA0164.1	0.228
MA0258.1	MA0258.1	0.0221
MA0259.1	MA0259.1	0.763

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11094

Novel motif	Logo	P-value
1	1	0.0386
10	10	0.152
100	100	0.422
101	101	0.934
102	102	0.867
103	103	0.055
104	104	0.202
105	105	0.802
106	106	0.0324
107	107	0.215
108	108	0.914
109	109	0.0276
11	11	0.12
110	110	0.0809
111	111	0.0137
112	112	0.0497
113	113	0.399
114	114	0.195
115	115	0.78
116	116	0.204
117	117	0.111
118	118	0.803
119	119	0.0527
12	12	0.803
120	120	0.462
121	121	0.584
122	122	0.188
123	123	0.903
124	124	0.396
125	125	0.177
126	126	0.0288
127	127	0.0779
128	128	0.0572
129	129	0.29
13	13	0.0225
130	130	0.736
131	131	0.808
132	132	0.806
133	133	0.131
134	134	0.535
135	135	0.746
136	136	0.34
137	137	0.26
138	138	0.168
139	139	0.236
14	14	0.747
140	140	0.016
141	141	0.63
142	142	0.939
143	143	0.319
144	144	0.12
145	145	0.0645
146	146	0.351
147	147	0.657
148	148	0.114
149	149	0.348
15	15	0.307
150	150	0.351
151	151	0.368
152	152	0.0237
153	153	0.946
154	154	0.999
155	155	0.274
156	156	0.0838
157	157	0.189
158	158	0.186
159	159	0.481
160	160	0.507
161	161	0.392
162	162	0.674
163	163	0.911
164	164	0.0627
165	165	0.121
166	166	0.111
167	167	0.448
168	168	0.881
169	169	0.0061
17	17	0.0414
18	18	0.479
19	19	0.0858
2	2	0.661
20	20	0.961
21	21	0.967
22	22	0.444
23	23	0.406
24	24	0.0853
25	25	0.74
26	26	0.0113
27	27	0.524
28	28	0.654
29	29	0.133
3	3	0.293
30	30	0.983
31	31	0.38
32	32	0.131
33	33	0.592
34	34	0.956
35	35	0.185
36	36	0.176
37	37	0.0512
38	38	0.466
39	39	0.49
4	4	0.224
40	40	0.56
41	41	0.606
42	42	0.199
43	43	0.326
44	44	0.311
45	45	0.725
46	46	0.0641
47	47	0.339
48	48	0.237
49	49	0.185
5	5	0.482
50	50	0.697
51	51	0.474
52	52	0.461
53	53	0.939
54	54	0.706
55	55	0.437
56	56	0.37
57	57	0.512
58	58	0.34
59	59	0.0587
6	6	0.826
60	60	0.16
61	61	0.134
62	62	0.221
63	63	0.0746
64	64	0.587
65	65	0.102
66	66	0.324
67	67	0.784
68	68	0.951
69	69	0.519
7	7	0.157
70	70	0.0284
71	71	0.00912
72	72	0.26
73	73	0.0261
74	74	0.878
75	75	0.094
76	76	0.763
77	77	0.0434
78	78	0.259
79	79	0.0394
8	8	0.0828
80	80	0.797
81	81	0.562
82	82	0.315
83	83	0.63
84	84	0.831
85	85	0.0131
86	86	0.0443
87	87	0.0604
88	88	0.974
89	89	0.273
9	9	0.857
90	90	0.0933
91	91	0.263
92	92	0.0514
93	93	0.291
94	94	0.805
95	95	0.29
96	96	0.306
97	97	0.0119
98	98	0.926
99	99	0.51

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11094

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011256 mouse pancreas- neonate N25 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000309 (mouse neonate N25 sample)
0011256 (mouse pancreas- neonate N25 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005388
+|accession_numbers=CAGE;DRX009064;DRR009938;DRZ001363;DRZ002746;DRZ012713;DRZ014096
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!3.11!1277.67!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.54!493.36!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.33!214.00!Ptf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.76!72.74!Foxa3;;chr17:27865882..27865901,-!p1@Spdef!1.67!45.33!Spdef;;chr1:138857076..138857105,-!p1@Nr5a2!1.60!39.00!Nr5a2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.55!34.79!Ppard;;chr9:74709695..74709722,+!p1@Onecut1!1.53!32.68!Onecut1;;chr4:133109285..133109308,+!p1@Nr0b2!1.45!27.41!Nr0b2;;chr10:88969376..88969395,-!p1@Nr1h4!1.44!26.35!Nr1h4;;chr14:63864056..63864102,-!p1@Gata4!1.41!42.17!Gata4;;chr9:106362954..106362977,+!p6@Pcbp4!1.36!22.14!Pcbp4;;chr2:163332558..163332596,+!p2@Hnf4a!1.36!22.14!Hnf4a;;chr2:147871627..147871641,-!p1@Foxa2!1.30!18.98!Foxa2;;chr2:103143336..103143367,-!p1@Ehf!1.29!29.52!Ehf;;chr6:90412582..90412601,+!p1@Klf15!1.27!82.23!Klf15;;chr6:72849280..72849297,-!p6@Kcmf1!1.25!32.68!Kcmf1;;chr1:138857048..138857071,-!p2@Nr5a2!1.25!16.87!Nr5a2;;chr11:83664365..83664383,+!p1@Hnf1b!1.25!16.87!Hnf1b;;chr11:5420655..5420659,+!p3@Xbp1!1.23!15.81!Xbp1;;chr5:125538737..125538781,-!p2@Ncor2!1.17!49.55!Ncor2;;chr11:121380640..121380655,-!p1@Zfp750!1.12!20.03!Zfp750;;chr5:148081722..148081744,+!p2@Pdx1!1.10!11.60!Pdx1;;chr5:148081686..148081715,+!p1@Pdx1!1.10!11.60!Pdx1;;chr1:138857112..138857130,-!p7@Nr5a2!1.10!11.60!Nr5a2;;chr11:5420954..5420969,+!p2@Xbp1!1.09!142.32!Xbp1;;chr3:30408384..30408431,-!p4@Mecom!1.04!12.65!Mecom;;chr5:104121453..104121479,+!p4@Aff1!1.03!45.33!Aff1;;chr11:121380594..121380609,-!p2@Zfp750!0.97!14.76!Zfp750;;chr7:52472041..52472065,+!p2@Tead2!0.96!9.49!Tead2;;chr6:90412608..90412630,+!p2@Klf15!0.95!16.87!Klf15;;chr1:194979315..194979359,+!p1@Irf6!0.92!46.38!Irf6;;chr4:119486912..119486954,+!p3@Hivep3!0.91!12.65!Hivep3;;chr14:22808697..22808715,-!p4@Zfp503!0.91!8.43!Zfp503;;chr2:91864661..91864686,-!p1@Creb3l1!0.87!148.64!Creb3l1;;chr11:98605517..98605539,+!p5@Thra!0.87!9.49!Thra;;chr8:124806048..124806094,+!p1@Zfpm1!0.86!61.14!Zfpm1;;chr14:63890491..63890516,-!p2@Gata4!0.86!6.33!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.86!6.33!Gata4;;chr2:147871948..147871977,-!p3@Foxa2!0.86!6.33!Foxa2;;chr7:52071956..52071978,-!p1@Atf5!0.84!206.62!Atf5;;chr18:7004715..7004731,-!p1@Mkx!0.84!14.76!Mkx;;chr6:90412556..90412581,+!p3@Klf15!0.84!13.70!Klf15;;chr1:137155026..137155042,-!p1@Elf3!0.83!35.84!Elf3;;chr18:74375772..74375799,+!p2@Cxxc1!0.83!17.92!Cxxc1;;chr3:30408674..30408716,-!p2@Mecom!0.82!9.49!Mecom;;chr2:147872790..147872821,-!p2@Foxa2!0.80!5.27!Foxa2;;chr5:115420882..115420896,-!p3@Hnf1a!0.80!5.27!Hnf1a;;chr19:43686789..43686811,+!p1@Nkx2-3!0.80!5.27!Nkx2-3;;chr7:52471143..52471186,+!p1@Tead2!0.78!59.03!Tead2;;chr11:121380611..121380625,-!p3@Zfp750!0.78!6.33!Zfp750;;chr11:5420973..5420992,+!p1@Xbp1!0.77!566.10!Xbp1;;chr5:34530293..34530318,-!p2@Mxd4!0.77!30.57!Mxd4;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.76!50.60!Zfp706;;chr4:154010918..154010931,-!p1@Prdm16!0.75!14.76!Prdm16;;chr18:11052606..11052633,+!p4@Gata6!0.75!12.65!Gata6;;chr3:30408603..30408668,-!p1@Mecom!0.75!11.60!Mecom;;chr12:100802113..100802127,-!p5@Foxn3!0.75!6.33!Foxn3;;chr3:94176733..94176794,+!p1@Rorc!0.74!39.00!Rorc;;chr3:89197057..89197114,-!p1@Zbtb7b!0.72!15.81!Zbtb7b;;chr7:51787434..51787448,-!p1@Spib!0.72!6.33!Spib;;chr2:79296783..79296801,-!p1@Neurod1!0.72!4.22!Neurod1;;chr2:103143315..103143328,-!p2@Ehf!0.72!4.22!Ehf;;chr11:96685444..96685473,-!p5@Nfe2l1!0.72!4.22!Nfe2l1;;chr11:96684043..96684069,-!p9@Nfe2l1!0.72!4.22!Nfe2l1;;chr17:14011485..14011507,+!p2@Mllt4!0.72!4.22!Mllt4;;chr1:172797892..172797915,-!p1@Atf6!0.71!131.77!Atf6;;chr19:10315179..10315241,-!p1@Gm98!0.71!48.49!Gm98;;chr12:100801928..100801939,-!p6@Foxn3!0.71!5.27!Foxn3;;chr14:22807083..22807104,-!p1@Zfp503!0.70!79.06!Zfp503;;chr7:148513409..148513455,-!p2@Deaf1!0.70!21.08!Deaf1;;chr18:36441119..36441158,+!p2@Pura!0.69!10.54!Pura;;chr1:138846047..138846074,-!p5@Nr5a2!0.69!4.22!Nr5a2;;chr8:87643578..87643593,-!p1@Zfp791!0.68!8.43!Zfp791;;chr1:194979361..194979373,+!p2@Irf6!0.68!5.27!Irf6;;chr1:64168228..64168250,-!p7@Klf7!0.68!5.27!Klf7;;chr19:23215673..23215753,+!p1@Klf9!0.67!61.14!Klf9;;chr2:115890469..115890485,-!p7@Meis2!0.67!6.33!Meis2;;chr15:61817095..61817111,+!p1@Myc!0.66!246.68!Myc;;chr11:53164533..53164548,+!p4@Aff4!0.66!11.60!Aff4;;chr13:56804865..56804898,+!p3@Smad5!0.66!10.54!Smad5;;chr2:169458799..169458832,+!p5@Tshz2!0.66!6.33!Tshz2;;chr5:31262609..31262693,-!p1@Preb!0.65!210.84!Preb;;chr8:125897750..125897758,+!p2@Tcf25!0.65!27.41!Tcf25;;chr6:14851440..14851497,+!p2@Foxp2!0.65!9.49!Foxp2;;chr19:23215446..23215457,+!p8@Klf9!0.65!4.22!Klf9;;chr18:80904854..80904919,-!p2@Nfatc1!0.63!46.38!Nfatc1;;chr10:114821444..114821491,-!p1@Thap2!0.63!30.57!Thap2;;chr2:160698288..160698358,-!p3@Zhx3!0.63!11.60!Zhx3;;chr8:13339656..13339661,+!p3@Tfdp1!0.63!8.43!Tfdp1;;chr11:5761979..5761992,+!p2@Aebp1!0.63!7.38!Aebp1;;chr19:28754655..28754673,-!p3@Glis3!0.63!5.27!Glis3;;chr19:23215430..23215441,+!p7@Klf9!0.63!4.22!Klf9;;chr8:124806111..124806122,+!p3@Zfpm1!0.63!4.22!Zfpm1;;chr6:146744563..146744594,+!p1@Arntl2!0.62!6.33!Arntl2;;chr3:3508024..3508069,+!p2@Hnf4g!0.62!3.16!Hnf4g;;chr3:30039329..30039355,-!p5@Mecom!0.62!3.16!Mecom;;chr5:102094214..102094230,-!p1@Nkx6-1!0.62!3.16!Nkx6-1;;chr9:74709664..74709671,+!p6@Onecut1!0.62!3.16!Onecut1;;chr14:63890519..63890539,-!p3@Gata4!0.62!3.16!Gata4;;chr14:63864337..63864381,-!p6@Gata4!0.62!3.16!Gata4;;chr17:28409136..28409150,+!p3@Ppard!0.62!3.16!Ppard;;chr2:168415815..168415872,-!p1@Nfatc2!0.61!20.03!Nfatc2;;chr10:80600749..80600766,+!p2@Zbtb7a!0.61!18.98!Zbtb7a;;chr6:14851287..14851342,+!p1@Foxp2!0.61!11.60!Foxp2;;chr2:169458496..169458516,+!p6@Tshz2!0.61!7.38!Tshz2;;chr1:69732511..69732540,-!p2@Ikzf2!0.61!4.22!Ikzf2;;chr1:179372411..179372509,+!p1@Zfp238!0.60!45.33!Zfp238;;chr11:18918820..18918831,-!p4@Meis1!0.60!6.33!Meis1;;chr5:31262699..31262712,-!p2@Preb!0.60!5.27!Preb;;chr5:36826883..36826951,-!p1@Tada2b!0.59!26.35!Tada2b;;chr2:56976543..56976558,-!p2@Nr4a2!0.59!7.38!Nr4a2;;chr15:37162796..37162828,+!p1@Grhl2!0.59!5.27!Grhl2;;chr2:115890294..115890334,-!p9@Meis2!0.59!4.22!Meis2;;chr2:18314363..18314465,-!p1@Dnajc1!0.58!84.33!Dnajc1;;chr19:37509324..37509337,+!p1@Hhex!0.58!24.25!Hhex;;chr8:79426176..79426275,+!p1@Nr3c2!0.58!16.87!Nr3c2;;chr12:113916993..113917009,+!p2@Zbtb42!0.58!5.27!Zbtb42;;chr18:69681483..69681514,+!p11@Tcf4!0.58!5.27!Tcf4;;chr9:69137648..69137656,+!p5@Rora!0.58!4.22!Rora;;chr10:107769229..107769238,+!p3@Pawr!0.58!4.22!Pawr;;chr9:96620459..96620478,-!p9@Zbtb38!0.58!3.16!Zbtb38;;chr6:72849716..72849805,-!p1@Kcmf1!0.57!42.17!Kcmf1;;chr4:154010409..154010466,-!p2@Prdm16!0.57!7.38!Prdm16;;chr8:107793737..107793757,+!p2@Hsf4!0.57!3.16!Hsf4;;chr12:113917014..113917034,+!p1@Zbtb42!0.56!5.27!Zbtb42;;chr15:81633116..81633125,+!p6@Tef!0.56!3.16!Tef;;chr12:85534895..85534915,-!p8@C130039O16Rik!0.55!4.22!C130039O16Rik;;chr1:179374784..179374800,+!p2@Zfp238!0.55!3.16!Zfp238;;chr6:14851547..14851571,+!p7@Foxp2!0.55!3.16!Foxp2;;chr11:112643496..112643562,+!p1@Sox9!0.54!117.01!Sox9;;chr17:71199121..71199165,-!p2@Tgif1!0.54!22.14!Tgif1;;chr6:134780234..134780288,+!p1@Crebl2!0.54!9.49!Crebl2;;chr9:48644037..48644067,-!p2@Zbtb16!0.54!7.38!Zbtb16;;chr19:23215469..23215494,+!p2@Klf9!0.54!4.22!Klf9;;chr19:5560600..5560617,-!p1@Ovol1!0.54!3.16!Ovol1;;chr2:115888250..115888298,-!p10@Meis2!0.54!3.16!Meis2;;chr6:118429255..118429336,-!p1@Zfp9!0.53!49.55!Zfp9;;chr8:124806017..124806040,+!p2@Zfpm1!0.53!33.73!Zfpm1;;chr5:34530277..34530292,-!p3@Mxd4!0.53!7.38!Mxd4;;chr6:15135639..15135655,+!p9@Foxp2!0.53!3.16!Foxp2;;chr1:38721792..38721845,-!p1@Aff3!0.53!3.16!Aff3;;chr10:107769219..107769226,+!p5@Pawr!0.53!3.16!Pawr;;chr8:125897678..125897746,+!p1@Tcf25!0.52!614.59!Tcf25;;chr5:72950853..72950930,-!p1@Nfxl1!0.52!52.71!Nfxl1;;chr5:135582751..135582788,+!p1@Mlxipl!0.52!11.60!Mlxipl;;chr10:80889867..80889924,-!p1@Nfic!0.51!83.28!Nfic;;chr10:107769168..107769215,+!p1@Pawr!0.51!29.52!Pawr;;chr4:148178529..148178548,+!p3@Casz1!0.51!6.33!Casz1;;chr16:55822241..55822258,-!p1@Nfkbiz!0.50!88.55!Nfkbiz;;chr17:3557718..3557733,-!p2@Tfb1m!0.50!7.38!Tfb1m;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.49!85.39!Zfp706;;chr3:32264565..32264613,-!p1@Zmat3!0.49!30.57!Zmat3;;chr14:79915425..79915501,+!p1@Elf1!0.49!24.25!Elf1;;chr9:96620228..96620308,-!p3@Zbtb38!0.49!12.65!Zbtb38;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.49!10.54!Ppp1r13l;;chr19:23215554..23215567,+!p5@Klf9!0.49!3.16!Klf9;;chr12:74214394..74214422,-!p1@Six4!0.49!3.16!Six4;;chr15:37163065..37163092,+!p4@Grhl2!0.49!2.11!Grhl2;;chr13:48758358..48758415,+!p2@Barx1!0.49!2.11!Barx1;;chr14:63890459..63890484,-!p4@Gata4!0.49!2.11!Gata4;;chr13:48758276..48758291,+!p1@Barx1!0.49!2.11!Barx1;;chr9:74714303..74714318,+!p2@Onecut1!0.49!2.11!Onecut1;;chr9:74714281..74714296,+!p5@Onecut1!0.49!2.11!Onecut1;;chr6:14851377..14851396,+!p10@Foxp2!0.49!2.11!Foxp2;;chr5:115421065..115421088,-!p1@Hnf1a!0.49!2.11!Hnf1a;;chr5:148081667..148081678,+!p3@Pdx1!0.49!2.11!Pdx1;;chr17:28409059..28409076,+!p6@Ppard!0.49!2.11!Ppard;;chr16:43235969..43235989,+!p20@Zbtb20!0.49!2.11!Zbtb20;;chr4:119486980..119486993,+!p6@Hivep3!0.49!2.11!Hivep3;;chr1:138850177..138850182,-!p11@Nr5a2!0.49!2.11!Nr5a2;;chr1:165243978..165243992,-!p9@Prrx1!0.49!2.11!Prrx1;;chr1:138846079..138846103,-!p6@Nr5a2!0.49!2.11!Nr5a2;;chr2:147872074..147872079,-!p4@Foxa2!0.49!2.11!Foxa2;;chr9:96096707..96096772,+!p1@Tfdp2!0.48!41.11!Tfdp2;;chr13:99954640..99954681,+!p1@Zfp366!0.48!9.49!Zfp366;;chr7:148513456..148513506,-!p1@Deaf1!0.47!41.11!Deaf1;;chr15:10400285..10400360,-!p1@Dnajc21!0.47!34.79!Dnajc21;;chr2:160698668..160698679,-!p4@Zhx3!0.47!4.22!Zhx3;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.46!318.36!Zfp706;;chr18:39649430..39649522,-!p2@Nr3c1!0.46!25.30!Nr3c1;;chr18:11052642..11052659,+!p1@Gata6!0.46!12.65!Gata6;;chr9:69137672..69137702,+!p2@Rora!0.46!10.54!Rora;;chrX:34443339..34443348,-!p2@Nkrf!0.46!6.33!Nkrf;;chr9:96159147..96159204,+!p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Irf5;;chr1:170362027..170362036,-!p15@Pbx1!0.27!1.05!Pbx1;;chr14:18493480..18493494,+!p2@Thrb!0.27!1.05!Thrb;;chr2:83484681..83484704,+!p1@Zc3h15!0.26!73.79!Zc3h15;;chr4:43575485..43575542,+!p1@Creb3!0.26!46.38!Creb3;;chr3:96001503..96001557,-!p1@Bola1!0.26!34.79!Bola1;;chr3:19957802..19957857,+!p1@Hltf!0.26!28.46!Hltf;;chr9:63605740..63605771,-!p1@Smad3!0.26!23.19!Smad3;;chr11:4604645..4604705,+!p1@Zmat5!0.26!21.08!Zmat5;;chr1:141318773..141318840,+!p1@Zbtb41!0.26!18.98!Zbtb41;;chr5:143942400..143942474,-!p1@Rbak!0.26!16.87!Rbak;;chr3:54611674..54611690,-!p2@Rfxap!0.26!11.60!Rfxap;;chr6:97757008..97757061,+!p1@Mitf!0.26!6.33!Mitf;;chr17:15701263..15701277,-!p2@Prdm9!0.26!3.16!Prdm9;;chr18:83079981..83080037,+!p6@Zfp516!0.26!2.11!Zfp516;;chr5:120121262..120121282,+!p6@Tbx3!0.26!1.05!Tbx3;;chr12:25257176..25257190,+!p3@Grhl1!0.26!1.05!Grhl1;;chr15:102865131..102865151,+!p2@Hoxc4!0.26!1.05!Hoxc4;;chr11:44431626..44431637,+!p10@Ebf1!0.26!1.05!Ebf1;;chr10:127080230..127080241,+!p6@Stat6!0.26!1.05!Stat6;;chr5:34530319..34530398,-!p1@Mxd4!0.25!78.01!Mxd4;;chr18:39650303..39650371,-!p1@Nr3c1!0.25!17.92!Nr3c1;;chr7:134170310..134170341,-!p5@Maz!0.25!13.70!Maz;;chr6:47785649..47785724,+!p1@Zfp398!0.25!12.65!Zfp398;;chr15:81633165..81633188,+!p2@Tef!0.25!12.65!Tef;;chr7:26052688..26052742,+!p1@Cic!0.25!10.54!Cic;;chr18:11052456..11052477,+!p3@Gata6!0.25!4.22!Gata6;;chr1:172797920..172797931,-!p3@Atf6!0.25!4.22!Atf6;;chr5:134790326..134790343,-!p8@Gtf2i!0.25!3.16!Gtf2i;;chr7:135020469..135020485,+!p4@Zfp646!0.25!2.11!Zfp646;;chr16:43363968..43364001,+!p7@Zbtb20!0.25!2.11!Zbtb20;;chr11:106128936..106128955,-!p4@Smarcd2!0.25!1.05!Smarcd2;;chr8:73905892..73905903,-!p5@Nr2f6!0.25!1.05!Nr2f6;;chr8:26950937..26950991,-!p3@Ash2l!0.25!1.05!Ash2l;;chr6:99471206..99471219,-!p12@Foxp1!0.25!1.05!Foxp1;;chr18:3281034..3281104,-!p1@Crem!0.24!10.54!Crem;;chr17:28314341..28314394,+!p2@Zfp523!0.24!8.43!Zfp523;;chr12:112088483..112088512,+!p1@Zfp839!0.24!8.43!Zfp839;;chr18:83084030..83084056,+!p1@Zfp516!0.24!7.38!Zfp516;;chr2:152758901..152758925,-!p1@Foxs1!0.24!6.33!Foxs1;;chr3:14578786..14578807,+!p2@E2f5!0.24!5.27!E2f5;;chr7:29551464..29551487,-!p2@Nfkbib!0.24!5.27!Nfkbib;;chr1:181733737..181733755,-!p2@Ahctf1!0.24!4.22!Ahctf1;;chr5:76733499..76733532,-!p2@Clock!0.24!4.22!Clock;;chr1:74634691..74634719,-!p2@Zfp142!0.24!3.16!Zfp142;;chr16:43363837..43363842,+!p11@Zbtb20!0.24!2.11!Zbtb20;;chr13:117099847..117099907,-!p1@Isl1!0.24!2.11!Isl1;;chr14:118636214..118636235,-!p1@Sox21!0.24!1.05!Sox21;;chr15:37162834..37162849,+!p2@Grhl2!0.24!1.05!Grhl2;;chr1:87546602..87546617,+!p2@Sp100!0.24!1.05!Sp100;;chr6:29490887..29490891,+!p5@Irf5!0.24!1.05!Irf5;;chr9:63869705..63869713,-!p8@Smad6!0.24!1.05!Smad6;;chr7:25292118..25292129,+!p8@Zfp428!0.24!1.05!Zfp428;;chr18:5591389..5591406,+!p3@Zeb1!0.24!1.05!Zeb1;;chr16:43503594..43503634,+!p15@Zbtb20!0.24!1.05!Zbtb20;;chr3:95032213..95032226,-!p6@Mllt11!0.24!1.05!Mllt11;;chr4:154010334..154010347,-!p8@Prdm16!0.24!1.05!Prdm16;;chr4:13670441..13670463,+!p8@Runx1t1!0.24!1.05!Runx1t1;;chr5:147760216..147760292,+!p1@Gtf3a!0.23!68.52!Gtf3a;;chr9:111020574..111020687,+!p1@Lrrfip2!0.23!68.52!Lrrfip2;;chr8:87324243..87324277,-!p1@Nfix!0.23!36.90!Nfix;;chr8:3493135..3493212,+!p1@Zfp358!0.23!25.30!Zfp358;;chr12:72116953..72117050,+!p1@Arid4a!0.23!17.92!Arid4a;;chr3:94819338..94819384,-!p1@Zfp687!0.23!13.70!Zfp687;;chr7:28764174..28764200,-!p1@Zfp780b!0.23!9.49!Zfp780b;;chr14:64562503..64562524,+!p1@Sox7!0.23!8.43!Sox7;;chr2:48805015..48805042,+!p2@Mbd5!0.23!8.43!Mbd5;;chr11:50872733..50872809,+!p1@Zfp354a!0.23!6.33!Zfp354a;;chr8:112603610..112603656,+!p1@Zfp612!0.23!6.33!Zfp612;;chr6:37392159..37392172,-!p2@Creb3l2!0.23!6.33!Creb3l2;;chr6:39068210..39068251,-!p1@Parp12!0.23!6.33!Parp12;;chr4:119960301..119960359,-!p1@Foxo6!0.23!4.22!Foxo6;;chr5:3647720..3647733,-!p3@Gatad1!0.23!2.11!Gatad1;;chr6:145813905..145813932,-!p2@Bhlhe41!0.23!2.11!Bhlhe41;;chr15:25914217..25914232,+!p3@Zfp622!0.23!2.11!Zfp622;;chr13:44826634..44826645,+!p7@Jarid2!0.23!2.11!Jarid2;;chr2:35960919..35960954,-!p1@Lhx6!0.23!2.11!Lhx6;;chr9:121668850..121668885,+!p2@Zfp651!0.23!2.11!Zfp651;;chr9:20385789..20385803,+!p5@Zfp846!0.23!1.05!Zfp846;;chr15:50721503..50721514,-!p15@Trps1!0.23!1.05!Trps1;;chr3:130815703..130815721,+!p2@Lef1!0.23!1.05!Lef1;;chr2:91034924..91034946,-!p2@Nr1h3!0.23!1.05!Nr1h3;;chr4:128483422..128483430,-!p6@Zfp362!0.23!1.05!Zfp362;;chr11:102177974..102177992,-!p17@Ubtf!0.23!1.05!Ubtf;;chr10:88996336..88996380,-!p2@Nr1h4!0.23!1.05!Nr1h4;;chr10:44178575..44178590,-!p5@Prdm1!0.23!1.05!Prdm1;;chr1:69732682..69732719,-!p4@Ikzf2!0.23!1.05!Ikzf2;;chr18:61336630..61336641,-!p3@Hmgxb3!0.23!1.05!Hmgxb3;;chr7:134388025..134388092,+!p1@Zfp771!0.22!30.57!Zfp771;;chr3:52072329..52072346,+!p1@Foxo1!0.22!22.14!Foxo1;;chr6:86619130..86619158,-!p2@Mxd1!0.22!21.08!Mxd1;;chr2:168780757..168780805,-!p1@LOC100502777,p1@Zfp64!0.22!21.08!Zfp64;;chr14:22320101..22320119,+!p1@Myst4!0.22!20.03!Myst4;;chrX:35542957..35543003,+!p1@Zbtb33!0.22!14.76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bx;;chr4:135840552..135840567,+!p4@Zfp46!0.13!1.05!Zfp46;;chr1:9690474..9690493,-!p3@Mybl1!0.13!1.05!Mybl1;;chr2:34227659..34227674,-!p3@Pbx3!0.13!1.05!Pbx3;;chr12:56593574..56593592,-!p1@Nfkbia!0.12!61.14!Nfkbia;;chr16:11176363..11176458,-!p1@Zc3h7a!0.12!57.98!Zc3h7a;;chr4:34830168..34830213,-!p1@Zfp292!0.12!44.28!Zfp292;;chr4:133309876..133309934,-!p1@Arid1a!0.12!32.68!Arid1a;;chr11:96691218..96691265,-!p2@Nfe2l1!0.12!32.68!Nfe2l1;;chr18:24113169..24113205,+!p1@Zfp397!0.12!30.57!Zfp397;;chr9:113840256..113840306,+!p1@Ubp1!0.12!25.30!Ubp1;;chr5:53981692..53981768,+!p2@Rbpj!0.12!21.08!Rbpj;;chr2:17986191..17986271,+!p1@Mllt10!0.12!20.03!Mllt10;;chr6:47998498..47998527,-!p1@Zfp777!0.12!18.98!Zfp777;;chr17:21145885..21145977,+!p1@Zfp160!0.12!15.81!Zfp160;;chr10:41170169..41170227,+!p1@Zbtb24!0.12!15.81!Zbtb24;;chr13:21545583..21545630,-!p1@Zfp187!0.12!14.76!Zfp187;;chr12:77471524..77471607,+!p1@Zbtb1!0.12!14.76!Zbtb1;;chr13:21622953..21622972,-!p2@Zfp192!0.12!6.33!Zfp192;;chr14:22319053..22319105,+!p2@Myst4!0.12!3.16!Myst4;;chr7:87171047..87171078,+!p1@Zfp710!0.12!3.16!Zfp710;;chr2:152223881..152223933,-!p3@Sox12!0.12!3.16!Sox12;;chr18:79306158..79306249,-!p1@Setbp1!0.12!3.16!Setbp1;;chr2:31428221..31428244,+!p2@Fubp3!0.12!2.11!Fubp3;;chr1:135557526..135557551,-!p1@Zbed6!0.12!1.05!Zbed6;;chr5:9161608..9161619,-!p3@Dmtf1!0.12!1.05!Dmtf1;;chr16:4594853..4594884,+!p3@Glis2!0.12!1.05!Glis2;;chr19:5424878..5424890,-!p7@Drap1!0.12!1.05!Drap1;;chr4:119212321..119212332,+!p2@Foxj3!0.12!1.05!Foxj3;;chr3:5218563..5218587,+!p5@Zfhx4!0.12!1.05!Zfhx4;;chr11:106993203..106993214,-!p5@Bptf!0.12!1.05!Bptf;;chr12:100802129..100802145,-!p4@Foxn3!0.12!1.05!Foxn3;;chr11:18918434..18918489,-!p3@Meis1!0.12!1.05!Meis1;;chr10:67599432..67599444,-!p4@Arid5b!0.12!1.05!Arid5b;;chr16:15887371..15887385,+!p1@Cebpd!0.11!39.00!Cebpd;;chr7:52253030..52253070,+!p1@Irf3!0.11!25.30!Irf3;;chr6:83391606..83391658,-!p1@Tet3!0.11!18.98!Tet3;;chr3:51144550..51144603,-!p2@Elf2!0.11!16.87!Elf2;;chr10:93610652..93610711,+!p1@Nr2c1!0.11!15.81!Nr2c1;;chr7:36587987..36588026,-!p1@Zfp507!0.11!14.76!Zfp507;;chr7:26006436..26006488,+!p1@Zfp526!0.11!12.65!Zfp526;;chr8:28087578..28087599,+!p2@Zfp703!0.11!10.54!Zfp703;;chr17:46693107..46693137,-!p1@Srf!0.11!10.54!Srf;;chr13:5860749..5860772,+!p2@Klf6!0.11!10.54!Klf6;;chr7:13063668..13063721,+!p1@Zfp606!0.11!7.38!Zfp606;;chr7:148452314..148452329,-!p1@Irf7!0.11!7.38!Irf7;;chr11:16908650..16908690,-!p1@Plek!0.11!6.33!Plek;;chr7:135020438..135020468,+!p1@Zfp646!0.11!4.22!Zfp646;;chr13:37918773..37918818,+!p3@Rreb1!0.11!4.22!Rreb1;;chr7:7124057..7124084,+!p1@Zfp418!0.11!3.16!Zfp418;;chr13:65380103..65380116,+!p3@Zfp369!0.11!2.11!Zfp369;;chr16:42907554..42907591,+!p5@Zbtb20!0.11!2.11!Zbtb20;;chr18:75528166..75528170,+!p3@Smad7!0.11!2.11!Smad7;;chr10:75495410..75495444,+!p2@Zfp280b!0.11!2.11!Zfp280b;;chr11:50745114..50745144,-!p1@Zfp354b!0.11!2.11!Zfp354b;;chr3:152059025..152059046,+!p4@Gm8261,p4@Zzz3!0.11!2.11!Zzz3;;chr9:106356265..106356276,+!p4@Pcbp4!0.11!1.05!Pcbp4;;chr7:19945089..19945107,+!p2@Ppp1r13l!0.11!1.05!Ppp1r13l;;chr7:4947625..4947634,-!p6@Zfp579!0.11!1.05!Zfp579;;chr11:98821858..98821907,+!p6@Rara!0.11!1.05!Rara;;chr18:3337399..3337422,-!p11@Crem!0.11!1.05!Crem;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.11!1.05!Hmga1;;chr11:62270791..62270834,-!p1@Ncor1!0.10!56.93!Ncor1;;chr17:13897509..13897607,+!p1@Mllt4!0.10!32.68!Mllt4;;chr17:4995902..4995959,+!p1@Arid1b!0.10!26.35!Arid1b;;chr4:149943647..149943707,+!p2@Rere!0.10!20.03!Rere;;chr6:48036529..48036657,-!p1@Zfp746!0.10!16.87!Zfp746;;chr6:86476190..86476201,-!p3@Pcbp1!0.10!13.70!Pcbp1;;chr19:38893646..38893732,-!p1@Noc3l!0.10!11.60!Noc3l;;chr6:124959279..124959335,+!p1@Zfp384!0.10!10.54!Zfp384;;chr2:91077082..91077122,-!p1@Ddb2!0.10!6.33!Ddb2;;chr7:135020060..135020124,-!p2@Zfp668!0.10!4.22!Zfp668;;chr7:105851808..105851822,+!p3@Prkrir!0.10!3.16!Prkrir;;chr16:55966525..55966543,+!p5@Rpl24,p5@Zbtb11!0.10!3.16!Zbtb11;;chr16:44173384..44173407,+!p2@Gm608!0.10!2.11!Gm608;;chr18:69681439..69681456,+!p7@Tcf4!0.10!2.11!Tcf4;;chr6:51382677..51382783,+!p1@Nfe2l3!0.10!2.11!Nfe2l3;;chr7:13063643..13063662,+!p2@Zfp606!0.10!2.11!Zfp606;;chr13:64253718..64253763,-!p2@Zfp367!0.10!2.11!Zfp367;;chr7:134169999..134170010,-!p13@Maz!0.10!1.05!Maz;;chr2:120996813..120996829,-!p2@Zscan29!0.10!1.05!Zscan29;;chr1:167932722..167932740,-!p2@Pou2f1!0.10!1.05!Pou2f1;;chrX:7341077..7341091,+!p5@Tfe3!0.10!1.05!Tfe3;;chr18:36953486..36953503,+!p2@Zmat2!0.10!1.05!Zmat2;;chr15:81633139..81633152,+!p4@Tef!0.10!1.05!Tef;;chr17:21626055..21626081,+!p2@Zfp53!0.10!1.05!Zfp53;;chr11:90250944..90250982,-!p2@Hlf!0.10!1.05!Hlf;;chr7:25917492..25917512,-!p1@Pou2f2!0.10!1.05!Pou2f2;;chr2:168055853..168055886,-!p1@Adnp,p1@Dpm1!0.09!74.85!Adnp;;chr6:28211907..28211943,-!p1@Zfp800!0.09!31.63!Zfp800;;chr7:88138544..88138584,+!p1@Zfp592!0.09!27.41!Zfp592;;chr1:173341436..173341468,+!p1@Usf1!0.09!26.35!Usf1;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.09!22.14!Atf2;;chr9:72380021..723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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011256
 |is_obsolete=
+|library_id=CNhs11094
+|library_id_phase_based=2:CNhs11094
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1555
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1555
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N25.CNhs11094.1555-45E2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N25.CNhs11094.1555-45E2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N25.CNhs11094.1555-45E2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N25.CNhs11094.1555-45E2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N25.CNhs11094.1555-45E2.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, neonate N25
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11094,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.0385242952361526,0,0,0,0,0,0.00290673237910255,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.312639783153065,0,0,1.45345347374989,0,0,0,0,0,0,-0.558422792324031,0,0,0,0,0,-0.0530028339192935,-0.0417740847988257,0.015287034318114,-0.491678354305154,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,0,0,0,0,-0.243225778194271,0.308709667403252,0.154548740381982,-0.0365927089968535,0,0,-0.00599050104043375,0,0,0,-0.0131681282952569,0.0993929471544437,0.944839353353827,0.233808188313157,0,0,0,0,0,0,0.727493848519138,1.02552803863553,0.620034691846413,0,0,0,0,0
@@ Line 59: / Line 73: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=45E2
+|rna_tube_id=4.50E+03
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 82: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1555-45E2;search_select_hide=table117:1555-45E2
 }}

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FF:1555-45E2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs11094

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0