FF:639-21E3: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:639-21E3
|name=heart, neonate N00, biol_rep1
|sample_id=639
|rna_tube_id=639-21E3
|rna_box=639-21E3
|rna_position=639-21E3
|sample_cell_lot=
|sample...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005147 | ||
| | |accession_numbers=CAGE;DRX008979;DRR009853;DRZ001278;DRZ002661;DRZ012628;DRZ014011 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000304,FF:0011393 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.32!207.96!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!2.05!109.99!Nkx2-5;;chr5:77543897..77543911,-!p2@Hopx!1.96!168.26!Hopx;;chr8:59799772..59799789,+!p1@Hand2!1.76!158.10!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.74!91.31!Gata4;;chr6:97879817..97879857,+!p2@Mitf!1.72!51.73!Mitf;;chr2:120365588..120365602,-!p2@Zfp106!1.43!42.62!Zfp106;;chr5:77544108..77544119,-!p7@Hopx!1.40!24.05!Hopx;;chr5:77544170..77544181,-!p6@Hopx!1.34!20.90!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.25!44.25!Tcf21;;chr5:77543935..77543947,-!p4@Hopx!1.21!15.30!Hopx;;chr5:120285144..120285160,+!p1@Tbx5!1.19!14.60!Tbx5;;chr18:11052485..11052508,+!p2@Gata6!1.17!38.53!Gata6;;chr18:11052642..11052659,+!p1@Gata6!1.14!63.99!Gata6;;chr1:189821714..189821761,+!p1@Esrrg!1.14!23.70!Esrrg;;chr14:63890491..63890516,-!p2@Gata4!1.14!12.84!Gata4;;chr10:30562571..30562597,-!p1@Hey2!1.08!26.39!Hey2;;chr18:11052456..11052477,+!p3@Gata6!1.07!33.98!Gata6;;chr9:87626083..87626108,-!p1@Tbx18!1.06!23.24!Tbx18;;chr1:92895299..92895373,+!p2@Lrrfip1!1.04!206.91!Lrrfip1;;chr13:73397958..73397994,+!p1@Irx4!1.04!10.04!Irx4;;chr11:101755669..101755686,-!p1@Meox1!1.02!17.16!Meox1;;chr4:148178559..148178603,+!p1@Casz1!1.01!26.74!Casz1;;chr7:17647736..17647772,-!p1@Hif3a!0.98!31.18!Hif3a;;chr14:63890660..63890687,-!p7@Gata4!0.97!8.41!Gata4;;chr4:150482563..150482655,-!p2@Camta1!0.96!29.66!Camta1;;chr9:48644306..48644364,-!p1@Zbtb16!0.95!33.16!Zbtb16;;chr14:63890459..63890484,-!p4@Gata4!0.95!7.94!Gata4;;chr10:12810631..12810649,+!p1@Plagl1!0.93!203.76!Plagl1;;chr9:48644037..48644067,-!p2@Zbtb16!0.92!18.80!Zbtb16;;chr7:119885539..119885574,+!p3@Tead1!0.90!7.01!Tead1;;chr5:24107779..24107825,-!p1@Smarcd3!0.85!43.44!Smarcd3;;chr1:170362437..170362478,-!p5@Pbx1!0.84!19.27!Pbx1;;chr16:43363152..43363186,+!p3@Zbtb20!0.84!14.36!Zbtb20;;chr17:26978449..26978458,-!p3@Nkx2-5!0.84!5.96!Nkx2-5;;chr5:77524250..77524300,-!p1@Hopx!0.83!125.17!Hopx;;chr15:40486566..40486600,+!p1@Zfpm2!0.83!36.55!Zfpm2;;chr7:119822957..119822980,+!p2@Tead1!0.83!29.54!Tead1;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.83!23.94!Ppp1r13l;;chr4:133109285..133109308,+!p1@Nr0b2!0.83!5.84!Nr0b2;;chr17:26978521..26978536,-!p2@Nkx2-5!0.83!5.72!Nkx2-5;;chr5:138187775..138187845,+!p7@Tsc22d4!0.82!7.82!Tsc22d4;;chr8:94325321..94325366,-!p1@Irx3!0.80!13.54!Irx3;;chr1:191994550..191994623,-!p1@Prox1!0.79!38.65!Prox1;;chr5:120285161..120285176,+!p2@Tbx5!0.78!5.02!Tbx5;;chr14:63890519..63890539,-!p3@Gata4!0.77!4.90!Gata4;;chr1:189432907..189432926,+!p3@Esrrg!0.77!4.90!Esrrg;;chr12:37835141..37835194,+!p1@Meox2!0.76!15.88!Meox2;;chr11:70043257..70043263,-!p1@Bcl6b!0.76!8.64!Bcl6b;;chr11:52096066..52096081,-!p2@Tcf7!0.76!5.96!Tcf7;;chr18:11052606..11052633,+!p4@Gata6!0.75!12.73!Gata6;;chr10:30562617..30562637,-!p2@Hey2!0.75!5.96!Hey2;;chr5:120285130..120285141,+!p3@Tbx5!0.75!4.67!Tbx5;;chr14:63890691..63890718,-!p8@Gata4!0.74!4.55!Gata4;;chr4:135840573..135840601,+!p1@Zfp46!0.73!38.77!Zfp46;;chrX:137135036..137135064,-!p4@Tsc22d3!0.73!9.22!Tsc22d3;;chr6:97879802..97879816,+!p5@Mitf!0.72!4.20!Mitf;;chr4:148178529..148178548,+!p3@Casz1!0.71!10.51!Casz1;;chr7:119822915..119822936,+!p5@Tead1!0.71!7.24!Tead1;;chr2:151969288..151969294,+!p1@Tcf15!0.71!6.77!Tcf15;;chr6:53523358..53523388,+!p1@Creb5!0.69!53.83!Creb5;;chr14:64562503..64562524,+!p1@Sox7!0.69!26.04!Sox7;;chr6:90412582..90412601,+!p1@Klf15!0.69!20.78!Klf15;;chr2:168415815..168415872,-!p1@Nfatc2!0.68!23.70!Nfatc2;;chr4:82151148..82151159,-!p5@Nfib!0.68!12.03!Nfib;;chr11:96690779..96690790,-!p3@Nfe2l1!0.68!9.93!Nfe2l1;;chr3:94176733..94176794,+!p1@Rorc!0.67!32.58!Rorc;;chr7:17642053..17642066,-!p2@Hif3a!0.67!5.49!Hif3a;;chr7:123174606..123174636,-!p5@Sox6!0.67!4.90!Sox6;;chr3:128917187..128917223,+!p2@Pitx2!0.66!4.32!Pitx2;;chr16:43363190..43363242,+!p2@Zbtb20!0.65!11.91!Zbtb20;;chr13:72766279..72766296,+!p2@Irx2!0.65!5.49!Irx2;;chr17:46693053..46693064,-!p4@Srf!0.65!5.14!Srf;;chr17:46693078..46693097,-!p3@Srf!0.64!15.65!Srf;;chr8:94325273..94325288,-!p5@Irx3!0.64!4.32!Irx3;;chr14:63864337..63864381,-!p6@Gata4!0.64!3.39!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.64!3.39!Gata4;;chr13:73398004..73398017,+!p2@Irx4!0.64!3.39!Irx4;;chr1:193007123..193007139,-!p1@Atf3!0.63!21.37!Atf3;;chr2:104966766..104966786,+!p1@Wt1!0.63!5.49!Wt1;;chr13:72101141..72101158,-!p3@Irx1!0.63!4.20!Irx1;;chr7:17642018..17642045,-!p4@Hif3a!0.63!3.85!Hif3a;;chr1:189432881..189432903,+!p2@Esrrg!0.63!3.27!Esrrg;;chr7:74517658..74517731,-!p1@Mef2a!0.62!171.29!Mef2a;;chr9:96096707..96096772,+!p1@Tfdp2!0.62!57.57!Tfdp2;;chr18:80909801..80909819,-!p1@Nfatc1!0.62!22.19!Nfatc1;;chr6:90412608..90412630,+!p2@Klf15!0.62!7.36!Klf15;;chr7:74517982..74518012,-!p2@Mef2a!0.61!6.31!Mef2a;;chr9:106355684..106355744,+!p5@Pcbp4!0.61!5.02!Pcbp4;;chr7:119822892..119822901,+!p7@Tead1!0.61!4.32!Tead1;;chr1:191993385..191993405,-!p3@Prox1!0.61!3.04!Prox1;;chr11:90252223..90252240,-!p1@Hlf!0.60!29.66!Hlf;;chr10:67599319..67599360,-!p2@Arid5b!0.59!39.00!Arid5b;;chr7:6649134..6649167,-!p1@Zim1!0.59!18.80!Zim1;;chr13:72766250..72766273,+!p1@Irx2!0.59!4.90!Irx2;;chr13:72101178..72101203,-!p1@Irx1!0.59!4.90!Irx1;;chr5:20387850..20387869,-!p1@Phtf2!0.58!35.15!Phtf2;;chr4:120488308..120488366,-!p1@Nfyc!0.57!19.27!Nfyc;;chr9:96653072..96653154,-!p1@Zbtb38!0.57!8.52!Zbtb38;;chr14:19071466..19071550,-!p1@Nr1d2!0.56!21.95!Nr1d2;;chr9:63869729..63869749,-!p4@Smad6!0.56!5.84!Smad6;;chr4:13712228..13712267,+!p3@Runx1t1!0.56!5.02!Runx1t1;;chr15:85566184..85566238,+!p1@Ppara!0.56!4.32!Ppara;;chr7:123174485..123174514,-!p6@Sox6!0.56!3.39!Sox6;;chr9:48644013..48644027,-!p5@Zbtb16!0.56!3.39!Zbtb16;;chr11:96690797..96690813,-!p1@Nfe2l1!0.55!62.24!Nfe2l1;;chr12:25336211..25336274,+!p1@Klf11!0.55!33.39!Klf11;;chr1:4483679..4483695,-!p1@Sox17!0.55!14.83!Sox17;;chr17:14011485..14011507,+!p2@Mllt4!0.55!2.57!Mllt4;;chr5:77524304..77524315,-!p5@Hopx!0.54!5.96!Hopx;;chr5:120285104..120285113,+!p5@Tbx5!0.54!2.45!Tbx5;;chr13:73397921..73397935,+!p3@Irx4!0.54!2.45!Irx4;;chr12:87702380..87702394,+!p6@Esrrb!0.54!2.45!Esrrb;;chr17:26978464..26978469,-!p4@Nkx2-5!0.54!2.45!Nkx2-5;;chr9:111020574..111020687,+!p1@Lrrfip2!0.53!136.27!Lrrfip2;;chr10:92773591..92773623,-!p1@Elk3!0.53!68.07!Elk3;;chrX:137077653..137077669,-!p3@Tsc22d3!0.53!13.31!Tsc22d3;;chr5:77524231..77524245,-!p3@Hopx!0.53!7.01!Hopx;;chr8:94881733..94881790,+!p1@Irx5!0.53!5.37!Irx5;;chr4:13712168..13712218,+!p4@Runx1t1!0.53!4.44!Runx1t1;;chr16:95680889..95680991,-!p1@Erg!0.52!23.94!Erg;;chr4:3865501..3865548,-!p1@Plag1!0.52!14.95!Plag1;;chr8:94325814..94325839,-!p2@Irx3!0.52!5.60!Irx3;;chr13:31898637..31898653,+!p2@Foxc1!0.52!4.67!Foxc1;;chr7:119822940..119822945,+!p6@Tead1!0.52!3.15!Tead1;;chr18:11052516..11052525,+!p5@Gata6!0.52!2.34!Gata6;;chr4:151235776..151235788,-!p5@Camta1!0.51!4.44!Camta1;;chr15:40486615..40486628,+!p3@Zfpm2!0.51!3.97!Zfpm2;;chr2:104966874..104966907,+!p2@Wt1!0.51!2.22!Wt1;;chr17:46693107..46693137,-!p1@Srf!0.50!27.32!Srf;;chr2:152223881..152223933,-!p3@Sox12!0.50!8.99!Sox12;;chr4:154010918..154010931,-!p1@Prdm16!0.50!7.82!Prdm16;;chr1:52176378..52176401,+!p3@Stat1!0.49!7.82!Stat1;;chr14:17407970..17408015,-!p2@Rarb!0.49!7.01!Rarb;;chr9:48644429..48644462,-!p3@Zbtb16!0.49!4.79!Zbtb16;;chr9:48644284..48644305,-!p4@Zbtb16!0.49!3.04!Zbtb16;;chr8:94325779..94325791,-!p7@Irx3!0.49!2.10!Irx3;;chr4:150482353..150482386,-!p6@Camta1!0.49!2.10!Camta1;;chr17:14011529..14011544,+!p7@Mllt4!0.49!2.10!Mllt4;;chr12:39506873..39506913,+!p1@Etv1!0.48!28.02!Etv1;;chr17:23004042..23004077,-!p2@Zfp945!0.48!10.04!Zfp945;;chr8:92872242..92872285,-!p1@Tox3!0.48!6.42!Tox3;;chr8:94325847..94325869,-!p3@Irx3!0.48!3.74!Irx3;;chr13:31898496..31898519,+!p3@Foxc1!0.48!3.74!Foxc1;;chr9:32349174..32349187,-!p6@Fli1!0.48!2.45!Fli1;;chr8:94881872..94881887,+!p2@Irx5!0.48!2.22!Irx5;;chr4:148275237..148275311,+!p2@Casz1!0.47!10.51!Casz1;;chr4:108131994..108132056,+!p2@Zcchc11!0.47!8.17!Zcchc11;;chr4:154010940..154010962,-!p3@Prdm16!0.47!5.25!Prdm16;;chr12:37835203..37835218,+!p3@Meox2!0.47!2.45!Meox2;;chr2:105003277..105003280,+!p5@Wt1!0.47!1.99!Wt1;;chr9:87626109..87626120,-!p3@Tbx18!0.47!1.99!Tbx18;;chr17:47873985..47874056,+!p1@Tfeb!0.46!21.13!Tfeb;;chr6:145814003..145814056,-!p1@Bhlhe41!0.46!6.89!Bhlhe41;;chr4:97444261..97444272,+!p9@Nfia!0.46!5.49!Nfia;;chr2:35960919..35960954,-!p1@Lhx6!0.46!4.20!Lhx6;;chr17:51971960..51971979,-!p1@Satb1!0.46!2.80!Satb1;;chr12:87702062..87702081,+!p4@Esrrb!0.46!1.87!Esrrb;;chr13:83663902..83663927,+!p1@Mef2c!0.45!61.54!Mef2c;;chr6:88148650..88148669,+!p1@Gata2!0.45!20.67!Gata2;;chr9:32443818..32443854,+!p2@Ets1!0.45!10.74!Ets1;;chr14:52634536..52634572,-!p4@Zfp219!0.45!7.01!Zfp219;;chr18:55152179..55152194,-!p5@Zfp608!0.45!6.66!Zfp608;;chr11:100800641..100800669,-!p3@Stat3!0.45!3.74!Stat3;;chr2:181406327..181406350,-!p1@Sox18!0.44!77.53!Sox18;;chr4:97444471..97444514,+!p1@Nfia!0.44!66.09!Nfia;;chr4:97444012..97444045,+!p4@Nfia!0.44!18.33!Nfia;;chrX:137077716..137077734,-!p1@Tsc22d3!0.44!17.63!Tsc22d3;;chrX:137077151..137077227,-!p2@Tsc22d3!0.44!17.05!Tsc22d3;;chrX:132420442..132420482,+!p2@Bhlhb9!0.44!12.38!Bhlhb9;;chr1:52176406..52176433,+!p2@Stat1!0.44!5.49!Stat1;;chr2:44965788..44965815,-!p11@Zeb2!0.44!3.97!Zeb2;;chr11:69749320..69749345,+!p2@Ybx2!0.44!3.39!Ybx2;;chr15:85565338..85565355,+!p7@Ppara!0.44!1.75!Ppara;;chr4:82151178..82151262,-!p1@Nfib!0.43!97.50!Nfib;;chr19:6996243..6996293,-!p1@Esrra!0.43!26.39!Esrra;;chr11:44431687..44431706,+!p2@Ebf1!0.43!10.86!Ebf1;;chr9:63869751..63869767,-!p1@Smad6!0.43!5.72!Smad6;;chr17:87153440..87153451,+!p4@Epas1!0.43!4.32!Epas1;;chr18:5591866..5591900,+!p1@Zeb1!0.42!58.50!Zeb1;;chr17:23004085..23004108,-!p1@Zfp945!0.42!22.77!Zfp945;;chr2:152223441..152223465,-!p2@Sox12!0.42!9.22!Sox12;;chr7:134489096..134489123,-!p2@Zfp768!0.42!6.77!Zfp768;;chr13:64253718..64253763,-!p2@Zfp367!0.42!5.49!Zfp367;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.42!3.74!Zbtb38;;chr2:17976799..17976829,+!p5@Mllt10!0.42!2.22!Mllt10;;chr10:88996295..88996335,-!p3@Nr1h4!0.42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fp644!0.24!2.69!Zfp644;;chr6:128250471..128250519,-!p1@Tead4!0.24!2.34!Tead4;;chr18:69753108..69753139,+!p8@Tcf4!0.24!2.34!Tcf4;;chr19:55816278..55816287,+!p10@Tcf7l2!0.24!2.34!Tcf7l2;;chr13:5860872..5860883,+!p3@Klf6!0.24!2.34!Klf6;;chr6:72185553..72185612,-!p2@Atoh8!0.24!2.22!Atoh8;;chr2:34227524..34227547,-!p2@Pbx3!0.24!2.22!Pbx3;;chr2:120365219..120365232,-!p4@Zfp106!0.24!1.40!Zfp106;;chr9:32348906..32348920,-!p3@Fli1!0.24!1.40!Fli1;;chr16:43364215..43364252,+!p14@Zbtb20!0.24!1.17!Zbtb20;;chr11:23978353..23978379,+!p10@Bcl11a!0.24!1.05!Bcl11a;;chr4:154010334..154010347,-!p8@Prdm16!0.24!1.05!Prdm16;;chr12:75008961..75009002,+!p1@Hif1a!0.23!91.54!Hif1a;;chr9:32503590..32503680,+!p1@Ets1!0.23!55.35!Ets1;;chr15:76181733..76181767,+!p1@Maf1!0.23!44.02!Maf1;;chr13:96095150..96095184,+!p2@Zbed3!0.23!10.16!Zbed3;;chr8:79426176..79426275,+!p1@Nr3c2!0.23!7.01!Nr3c2;;chr5:22940320..22940331,+!p2@Mll5!0.23!3.85!Mll5;;chr10:41996471..41996487,-!p4@Foxo3!0.23!3.74!Foxo3;;chr7:4990015..4990028,-!p2@Zfp784!0.23!3.50!Zfp784;;chr12:34642682..34642753,+!p2@Twist1!0.23!3.27!Twist1;;chr12:3807001..3807016,+!p5@Dnmt3a!0.23!3.04!Dnmt3a;;chr4:97439519..97439539,+!p11@Nfia!0.23!2.45!Nfia;;chr5:122500142..122500167,-!p2@Cux2!0.23!2.45!Cux2;;chr4:97444563..97444572,+!p12@Nfia!0.23!2.34!Nfia;;chr8:87225702..87225726,+!p3@Lyl1!0.23!2.34!Lyl1;;chr17:47874074..47874098,+!p3@Tfeb!0.23!2.10!Tfeb;;chr15:100058358..100058374,+!p2@Gm1862,p4@Atf1!0.23!1.99!Atf1;;chr7:4946900..4946921,-!p5@Zfp579!0.23!1.75!Zfp579;;chr6:146744595..146744613,+!p2@Arntl2!0.23!1.75!Arntl2;;chr19:5424878..5424890,-!p7@Drap1!0.23!1.63!Drap1;;chr11:44431710..44431725,+!p7@Ebf1!0.23!1.63!Ebf1;;chr15:61818914..61818943,+!p7@Myc!0.23!1.05!Myc;;chr15:57526415..57526425,+!p7@Zhx2!0.23!1.05!Zhx2;;chr3:130815703..130815721,+!p2@Lef1!0.23!1.05!Lef1;;chr4:150513630..150513686,-!p4@Camta1!0.23!0.93!Camta1;;chr3:29912058..29912071,-!p6@Mecom!0.23!0.93!Mecom;;chr3:66785857..66785873,-!p1@Shox2!0.23!0.70!Shox2;;chr11:90250999..90251013,-!p8@Hlf!0.23!0.70!Hlf;;chr11:70043718..70043743,-!p3@Bcl6b!0.23!0.70!Bcl6b;;chr10:30375665..30375674,-!p11@Ncoa7!0.23!0.70!Ncoa7;;chr1:87546572..87546579,+!p4@Sp100!0.23!0.70!Sp100;;chr6:52133827..52133854,-!p2@Hoxa3!0.23!0.70!Hoxa3;;chr13:83712735..83712761,+!p9@Mef2c!0.23!0.70!Mef2c;;chr12:87702439..87702449,+!p14@Esrrb!0.23!0.70!Esrrb;;chr7:38554745..38554756,-!p7@Zfp536!0.23!0.70!Zfp536;;chr9:106355745..106355766,+!p7@Pcbp4!0.23!0.70!Pcbp4;;chr8:94881686..94881700,+!p4@Irx5!0.23!0.70!Irx5;;chr18:5591424..5591444,+!p5@Zeb1!0.23!0.70!Zeb1;;chr19:45225149..45225186,+!p1@Tlx1!0.23!0.70!Tlx1;;chr12:81213989..81214006,-!p1@Zfp36l1!0.22!76.36!Zfp36l1;;chr11:100800671..100800770,-!p1@Stat3!0.22!48.34!Stat3;;chr9:56266612..56266654,+!p1@Hmg20a!0.22!41.57!Hmg20a;;chr11:18918959..18918976,-!p2@Meis1!0.22!19.97!Meis1;;chr9:22112085..22112138,-!p1@Zfp810!0.22!18.33!Zfp810;;chr10:57206160..57206220,+!p1@Hsf2!0.22!15.53!Hsf2;;chr7:25292331..25292421,+!p1@Zfp428!0.22!10.16!Zfp428;;chr16:17233653..17233683,+!p1@Hic2!0.22!8.87!Hic2;;chr8:97856080..97856150,-!p2@Zfp319!0.22!8.06!Zfp319;;chr6:72849946..72849979,-!p2@Kcmf1!0.22!8.06!Kcmf1;;chr9:96620228..96620308,-!p3@Zbtb38!0.22!6.42!Zbtb38;;chr18:69505414..69505465,+!p6@Tcf4!0.22!4.79!Tcf4;;chr4:120624269..120624302,-!p1@Zfp69!0.22!4.67!Zfp69;;chr14:65977459..65977489,+!p3@Zfp395!0.22!4.55!Zfp395;;chr4:97444280..97444291,+!p10@Nfia!0.22!2.80!Nfia;;chr15:98126545..98126588,-!p1@Zfp641!0.22!2.45!Zfp641;;chr19:46380235..46380277,+!p3@Nfkb2!0.22!2.45!Nfkb2;;chr2:92886587..92886622,-!p3@Prdm11!0.22!1.40!Prdm11;;chr1:4486481..4486501,-!p2@Sox17!0.22!1.40!Sox17;;chr2:152223852..152223872,-!p7@Sox12!0.22!1.17!Sox12;;chrX:103070960..103070973,-!p7@Atrx!0.22!1.17!Atrx;;chr15:102301149..102301221,+!p2@Pcbp2!0.21!53.48!Pcbp2;;chr7:26035739..26035757,-!p1@Erf!0.21!35.96!Erf;;chr13:44826722..44826742,+!p1@Jarid2!0.21!23.12!Jarid2;;chr5:134790384..134790418,-!p2@Gtf2i!0.21!18.68!Gtf2i;;chr16:42907676..42907797,+!p1@Zbtb20!0.21!18.33!Zbtb20;;chr11:59319701..59319741,-!p1@Zkscan17!0.21!16.35!Zkscan17;;chr18:3281034..3281104,-!p1@Crem!0.21!9.69!Crem;;chr18:69504157..69504184,+!p3@Tcf4!0.21!8.52!Tcf4;;chr2:181194069..181194144,-!p1@Zbtb46!0.21!7.71!Zbtb46;;chr6:37392159..37392172,-!p2@Creb3l2!0.21!6.07!Creb3l2;;chr4:126698529..126698536,+!p2@Sfpq!0.21!6.07!Sfpq;;chr7:6336020..6336068,+!p1@Zfp28!0.21!5.72!Zfp28;;chr2:44965856..44965896,-!p5@Zeb2!0.21!4.90!Zeb2;;chr7:135020324..135020368,-!p4@Zfp668!0.21!3.50!Zfp668;;chr1:162836606..162836631,+!p2@Rc3h1!0.21!3.27!Rc3h1;;chr4:13670571..13670625,+!p1@Runx1t1!0.21!3.27!Runx1t1;;chr7:25292076..25292114,+!p4@Zfp428!0.21!3.27!Zfp428;;chr6:133985971..133985991,+!p6@Etv6!0.21!3.15!Etv6;;chr4:128483731..128483757,-!p4@Zfp362!0.21!2.57!Zfp362;;chr18:24113349..24113374,+!p2@Zfp397!0.21!2.34!Zfp397;;chr9:96619968..96619983,-!p6@Zbtb38!0.21!1.63!Zbtb38;;chr16:4594853..4594884,+!p3@Glis2!0.21!1.52!Glis2;;chr7:13421299..13421303,+!p3@Zfp110!0.21!1.17!Zfp110;;chr7:16760434..16760453,+!p2@LOC1000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2!Rorb;;chr16:8672256..8672279,-!p1@Carhsp1,p1@Gm9791!0.15!2.10!Carhsp1;;chr13:37918094..37918119,+!p6@Rreb1!0.15!1.99!Rreb1;;chr4:133276779..133276796,-!p8@Arid1a!0.15!1.75!Arid1a;;chr4:119486912..119486954,+!p3@Hivep3!0.15!1.40!Hivep3;;chr7:134758722..134758733,-!p2@Zfp629!0.15!1.17!Zfp629;;chr18:69680960..69681007,+!p10@Tcf4!0.15!0.82!Tcf4;;chr15:61819047..61819076,+!p5@Myc!0.15!0.70!Myc;;chr11:69749299..69749319,+!p5@Ybx2!0.15!0.70!Ybx2;;chr4:48058102..48058110,+!p5@Nr4a3!0.15!0.58!Nr4a3;;chr13:78338288..78338309,-!p7@Nr2f1!0.15!0.58!Nr2f1;;chr15:102300965..102300977,+!p1@Pcbp2!0.14!401.44!Pcbp2;;chr5:139060930..139060975,-!p1@Zfp68!0.14!44.72!Zfp68;;chr11:53164236..53164284,+!p1@Aff4!0.14!35.73!Aff4;;chr12:117285924..117286018,+!p1@Zfp386!0.14!35.03!Zfp386;;chr5:53981912..53981942,+!p1@Rbpj!0.14!23.59!Rbpj;;chr9:30837968..30838036,+!p1@Zbtb44!0.14!21.25!Zbtb44;;chr18:24179250..24179314,-!p1@Zfp191!0.14!19.62!Zfp191;;chr11:96838974..96839007,-!p1@Sp2!0.14!18.57!Sp2;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.14!15.18!Zzz3;;chr7:4866804..4866832,+!p1@Zfp628!0.14!13.43!Zfp628;;chr2:17986272..17986332,+!p2@Mllt10!0.14!12.49!Mllt10;;chr16:87699237..87699279,+!p1@Bach1!0.14!12.26!Bach1;;chr8:109620410..109620462,-!p1@Terf2!0.14!11.21!Terf2;;chr2:72817320..72817399,-!p2@Sp3!0.14!10.16!Sp3;;chr7:5003117..5003159,+!p1@Zfp580!0.14!8.64!Zfp580;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.14!8.17!Hmga1;;chr7:13063668..13063721,+!p1@Zfp606!0.14!7.94!Zfp606;;chr11:100800771..100800798,-!p2@Stat3!0.14!7.71!Stat3;;chr19:5637528..5637548,+!p2@Rela!0.14!6.54!Rela;;chr3:95032558..95032641,-!p2@Mllt11!0.14!6.19!Mllt11;;chr13:67585161..67585205,-!p1@Zfp874b!0.14!5.72!Zfp874b;;chr12:77470372..77470456,-!p1@Zbtb25!0.14!4.67!Zbtb25;;chr2:37278526..37278575,-!p2@Rc3h2!0.14!4.44!Rc3h2;;chr5:134790428..134790441,-!p5@Gtf2i!0.14!3.74!Gtf2i;;chr15:57526206..57526241,+!p2@Zhx2!0.14!3.39!Zhx2;;chr18:79306158..79306249,-!p1@Setbp1!0.14!3.39!Setbp1;;chr4:133276698..133276743,-!p6@Arid1a!0.14!2.69!Arid1a;;chr4:126700722..126700753,+!p4@Sfpq!0.14!2.22!Sfpq;;chr10:30375579..30375616,-!p3@Ncoa7!0.14!2.10!Ncoa7;;chr5:140267510..140267555,+!p2@Mafk!0.14!2.10!Mafk;;chr12:119539732..119539762,-!p3@Sp4!0.14!1.99!Sp4;;chr9:72122680..72122693,+!p2@Zfp280d!0.14!1.99!Zfp280d;;chr6:39068181..39068206,-!p3@Parp12!0.14!1.75!Parp12;;chr4:82151583..82151594,-!p6@Nfib!0.14!1.63!Nfib;;chr1:193961837..193961849,-!p3@Rcor3!0.14!1.63!Rcor3;;chr6:72185210..72185228,-!p3@Atoh8!0.14!1.28!Atoh8;;chr9:106356278..106356292,+!p3@Pcbp4!0.14!1.28!Pcbp4;;chr12:113916993..113917009,+!p2@Zbtb42!0.14!1.28!Zbtb42;;chr5:9161608..9161619,-!p3@Dmtf1!0.14!1.17!Dmtf1;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.14!1.17!C130039O16Rik;;chr8:87324311..87324316,-!p8@Nfix!0.14!1.17!Nfix;;chr18:14131045..14131062,-!p3@Zfp521!0.14!1.17!Zfp521;;chr2:115890953..115890974,-!p6@Meis2!0.14!1.05!Meis2;;chr19:53385060..53385069,+!p6@Mxi1!0.14!0.93!Mxi1;;chr7:134169648..134169657,-!p14@Maz!0.14!0.93!Maz;;chrX:137077608..137077619,-!p6@Tsc22d3!0.14!0.82!Tsc22d3;;chr7:25292246..25292259,+!p6@Zfp428!0.14!0.70!Zfp428;;chr7:31741624..31741643,-!p7@LOC100504922,p7@Usf2!0.14!0.70!Usf2;;chr7:25292033..25292043,+!p9@Zfp428!0.14!0.70!Zfp428;;chr3:90097085..90097175,+!p1@Gatad2b!0.13!48.22!Gatad2b;;chr12:41172341..41172385,-!p1@Zfp277!0.13!41.57!Zfp277;;chr17:13897509..13897607,+!p1@Mllt4!0.13!35.61!Mllt4;;chr11:23978022..23978076,+!p1@Bcl11a!0.13!25.81!Bcl11a;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.13!24.64!Atf2;;chr4:119212257..119212303,+!p1@Foxj3!0.13!21.02!Foxj3;;chr10:41996494..41996549,-!p1@Foxo3!0.13!20.08!Foxo3;;chr5:76733756..76733815,-!p1@Clock!0.13!18.33!Clock;;chr12:85559785..85559840,-!p1@C130039O16Rik!0.13!15.65!C130039O16Rik;;chr18:80904854..80904919,-!p2@Nfatc1!0.13!13.78!Nfatc1;;chr5:145965392..145965443,+!p1@Zkscan5!0.13!10.39!Zkscan5;;chr7:134170496..134170539,-!p4@Maz!0.13!10.16!Maz;;chr2:128793119..128793179,+!p1@Zc3h6!0.13!9.34!Zc3h6;;chr9:71743854..71743909,-!p1@Tcf12!0.13!8.87!Tcf12;;chr5:104183219..104183236,+!p2@Aff1!0.13!7.59!Aff1;;chr4:129055091..129055168,-!p1@Zbtb8a!0.13!6.31!Zbtb8a;;chr18:35721834..35721851,+!p2@Matr3!0.13!5.72!Matr3;;chr5:104121391..104121450,+!p3@Aff1!0.13!5.60!Aff1;;chr5:9160908..9160912,-!p2@Dmtf1!0.13!4.20!Dmtf1;;chr15:102455492..102455531,-!p2@Atf7!0.13!3.97!Atf7;;chr16:84835315..84835342,+!p3@Gabpa!0.13!3.62!Gabpa;;chr15:57526469..57526534,+!p1@Zhx2!0.13!3.50!Zhx2;;chr7:4990029..4990052,-!p1@Zfp784!0.13!3.27!Zfp784;;chr1:135320962..135320981,-!p2@Sox13!0.13!3.27!Sox13;;chr4:45025159..45025197,-!p1@Zbtb5!0.13!2.92!Zbtb5;;chr8:108160826..108160879,+!p3@Ctcf!0.13!2.80!Ctcf;;chr1:172797934..172797945,-!p4@Atf6!0.13!2.69!Atf6;;chr6:133985709..133985735,+!p5@Etv6!0.13!2.57!Etv6;;chr5:139060915..139060929,-!p3@Zfp68!0.13!2.22!Zfp68;;chr16:42907554..42907591,+!p5@Zbtb20!0.13!2.22!Zbtb20;;chr2:128793085..128793116,+!p2@Zc3h6!0.13!2.10!Zc3h6;;chr7:30691543..30691586,-!p2@Zfp27!0.13!1.99!Zfp27;;chr1:170361826..170361844,-!p9@Pbx1!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| |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:639-21E3 | |||
|is_a=EFO:0002091;;FF:0011393 | |||
|is_obsolete= | |||
|library_id=CNhs11213 | |||
|library_id_phase_based=2:CNhs11213 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;639 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;639 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.nobarcode.rdna.fa.gz | |||
|name=heart, neonate N00 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11213,LSID748,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=0.025446419079083,0,0,0,0,0.0368888724804875,1.35257888294139,0,0.0239809638088447,0,0,0.59111747196738,0,0,0,0,0,0,0.209153656275042,0,0,0,0,0,0.0911499572672242,0,0,0,0,0,0,0,0.298219299677985,0,0,0,0,0.0204985291480816,0.0564152730131305,0.00859549279600791,0.187336599282485,0.102485547607338,0.187747679530811,0.0479619276176895,0,0,0,0,0,0,0,0,0,0.199707663231786,0,0.514048623563146,0.0479619276176895,0,0,0,0.0247435808446181,0,0.0612793213735714,0.311941961198173,0.358775719148858,0.0373216443470594,0.0577515105150321,0.128915724401428,0.262642567111753,0.159035307724707,0,0,0.013714234836224,0,0.0911499572672242,0,0.0328795583044409,-0.147854824010958,-0.283972919542397,-0.0308696672222179,0,0,0,0,0.0455749786336121,0,-0.0915665403705771,0.00690307053371164,0.0541629013832007,0,0,0,0,0.0754767656089536 | |||
|rna_box=21 | |||
|rna_catalog_number= | |||
|rna_concentration= | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=E3 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=2.10E+04 | |||
|rna_weight_ug= | |||
|sample_age= | |||
|sample_category=developmental | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=0 day neonate | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=639 | |||
|sample_note= | |||
|sample_sex=mixture | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=C57BL/6J | |||
|sample_tissue=heart | |||
|top_motifs=NR5A1,2:3.60608604297;MEF2{A,B,C,D}:3.13858975598;HOX{A5,B5}:2.35666708242;EVI1:2.29504786698;SRF:2.21560347446;GATA4:2.15904996289;NR3C1:2.10529853988;RXR{A,B,G}:1.94873896036;TEAD1:1.79716174413;AR:1.73742985287;NKX2-1,4:1.6736076253;FOXL1:1.56055123464;IKZF2:1.52179003134;ESRRA:1.47934884899;T:1.46315000992;ALX1:1.3996416861;TGIF1:1.38114984976;SOX5:1.37364573954;HMGA1,2:1.30740421007;IRF7:1.29112151657;NFE2L1:1.27171309818;HIF1A:1.27009855033;NKX2-2,8:1.24273820396;POU3F1..4:1.23224765778;PAX4:1.22540165993;NFATC1..3:1.17901269255;MYBL2:1.14350444112;PAX2:1.08688915339;UFEwm:1.03305171934;FOXO1,3,4:0.994856166918;MAFB:0.976571453453;NR6A1:0.887365047115;HBP1_HMGB_SSRP1_UBTF:0.854802998906;BPTF:0.823049445105;TEF:0.73143844435;GATA6:0.721821133258;PRDM1:0.719425009693;EBF1:0.68059437777;PITX1..3:0.676345175337;GCM1,2:0.64078594985;IKZF1:0.630457145488;FOXP1:0.593266339251;KLF4:0.575838456794;SOX{8,9,10}:0.52799270551;TFAP4:0.522046447149;NANOG{mouse}:0.516049470856;FOX{D1,D2}:0.486528121306;GFI1B:0.428645972696;MZF1:0.403231132565;ESR1:0.347777681321;TLX1..3_NFIC{dimer}:0.343364881773;YY1:0.305068163307;TFCP2:0.288788873313;CDC5L:0.287170681235;TOPORS:0.276495379397;SREBF1,2:0.262443232403;EP300:0.255279527774;CUX2:0.253545244124;MAZ:0.250719667273;HAND1,2:0.246284164104;ZBTB16:0.209153587453;FOXD3:0.194884964812;BREu{core}:0.181391135763;ATF4:0.170623730445;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.169183277296;TFAP2B:0.161190447579;FOSL2:0.155491679044;PATZ1:0.144810759782;CREB1:0.140135949392;RREB1:0.139629409436;SPIB:0.138909803463;SP1:0.130379951531;NFE2L2:0.12914395917;EN1,2:0.115838007145;MTE{core}:0.106486892731;SOX17:0.0996767765773;TLX2:0.0709361961059;ZNF238:0.0677435874064;SOX2:0.043840237233;GFI1:0.0424620969366;HIC1:0.0396297825217;ZFP161:0.038540200536;XCPE1{core}:0.0269884007741;ATF2:0.0269111100454;RBPJ:0.00861256401812;ELF1,2,4:0.00353801665902;RORA:-0.0408375118544;NR1H4:-0.0597392025342;GLI1..3:-0.0637212074613;TFAP2{A,C}:-0.073241749053;ZNF384:-0.0745730472507;HES1:-0.0915843708361;FOX{I1,J2}:-0.0939597721954;NHLH1,2:-0.102301483643;IRF1,2:-0.10706456505;SMAD1..7,9:-0.115067029499;ETS1,2:-0.130172667523;NKX3-2:-0.134706828815;PAX5:-0.13766974373;NKX3-1:-0.138598229584;PDX1:-0.144263574205;EGR1..3:-0.161536908775;FOXN1:-0.162937468476;GTF2I:-0.164289523989;CDX1,2,4:-0.165871002154;E2F1..5:-0.175891814693;GTF2A1,2:-0.194227728422;HOXA9_MEIS1:-0.202957353058;NFIX:-0.22290887501;ZNF143:-0.226906905796;NRF1:-0.242376224832;TBP:-0.250554859375;MYB:-0.256076559771;RXRA_VDR{dimer}:-0.267202077612;ARID5B:-0.267917612433;SPI1:-0.270255043003;NKX6-1,2:-0.310611003794;FOXP3:-0.316522942921;CRX:-0.321911043003;ZIC1..3:-0.325746539104;RFX2..5_RFXANK_RFXAP:-0.329565989702;PAX8:-0.329840747093;ELK1,4_GABP{A,B1}:-0.349584757992;NANOG:-0.371192970022;DBP:-0.37124759097;ALX4:-0.377793318343;TFDP1:-0.390197995621;MED-1{core}:-0.415007688262;FOXA2:-0.416949703157;MTF1:-0.434655012909;TBX4,5:-0.455932358356;JUN:-0.456578169307;VSX1,2:-0.479479858497;ZNF148:-0.485779976624;BACH2:-0.518827683116;DMAP1_NCOR{1,2}_SMARC:-0.521865309009;AHR_ARNT_ARNT2:-0.527285063725;ATF6:-0.537215466924;AIRE:-0.544299448607;ZNF423:-0.549084098744;NFE2:-0.557211415444;ATF5_CREB3:-0.579651381349;TP53:-0.587308050374;NFIL3:-0.595993910737;RFX1:-0.652088340756;NFY{A,B,C}:-0.664178732874;HNF4A_NR2F1,2:-0.677878531587;NKX2-3_NKX2-5:-0.684197742759;REST:-0.692462872276;MYFfamily:-0.711563960046;NFKB1_REL_RELA:-0.730762344681;PAX1,9:-0.760859650591;RUNX1..3:-0.761666355996;ZBTB6:-0.774371128007;HNF1A:-0.783882282969;POU6F1:-0.810164138538;FOS_FOS{B,L1}_JUN{B,D}:-0.827573154288;POU1F1:-0.83058647917;STAT2,4,6:-0.845187257844;TAL1_TCF{3,4,12}:-0.896227858442;SNAI1..3:-0.897023339372;FOX{F1,F2,J1}:-0.938003851397;HLF:-0.949727517277;CEBPA,B_DDIT3:-1.03331864696;STAT1,3:-1.08522505585;HOX{A4,D4}:-1.09627202046;POU2F1..3:-1.112198682;ZEB1:-1.11921356874;LMO2:-1.14520700087;MYOD1:-1.15416978774;POU5F1:-1.18537959372;PPARG:-1.1854570601;PBX1:-1.20161883569;HSF1,2:-1.20188364382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22517782067;bHLH_family:-1.22786645788;OCT4_SOX2{dimer}:-1.27428358289;ONECUT1,2:-1.29186570773;FOXQ1:-1.29947392601;LHX3,4:-1.30985068033;STAT5{A,B}:-1.34618520349;GZF1:-1.3721987868;PAX6:-1.38235549341;ADNP_IRX_SIX_ZHX:-1.41241863964;PRRX1,2:-1.46766689895;HMX1:-1.61990044177;LEF1_TCF7_TCF7L1,2:-1.69781570036;SPZ1:-1.79011035186;FOXM1:-2.65702888453 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:639-21E3;search_select_hide=table117:639-21E3 | |||
}} | }} |
Latest revision as of 19:18, 4 June 2020
Name: | heart, neonate N00 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs11213 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11213
0 | 0 |
1 | 0 |
10 | 0.458 |
100 | 0 |
1000 | 0.208 |
1001 | 0.435 |
1002 | 0.24 |
1003 | -0.0122 |
1004 | 0 |
1005 | -0.0575 |
1006 | 0.395 |
1007 | 0.0651 |
1008 | 0 |
1009 | 0.173 |
101 | -0.0248 |
1010 | 0 |
1011 | -0.0164 |
1012 | 0.0799 |
1013 | -0.2 |
1014 | 0.451 |
1015 | -0.0108 |
1016 | 0.159 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.0817 |
1022 | 0.756 |
1023 | 0 |
1024 | 0.259 |
1025 | 0 |
1026 | 0 |
1027 | 0 |
1028 | 0.048 |
1029 | 0.204 |
103 | 0.13 |
1030 | 0 |
1031 | 0.185 |
1032 | 0.0948 |
1033 | -0.0273 |
1034 | 0 |
1035 | 0.618 |
1036 | -0.185 |
1037 | 0 |
1038 | 0.193 |
1039 | 0.386 |
104 | 0 |
1040 | 0.164 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11213
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11213
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.434 |
10 | 10 | 0.644 |
100 | 100 | 0.689 |
101 | 101 | 0.367 |
102 | 102 | 0.79 |
103 | 103 | 0.722 |
104 | 104 | 0.547 |
105 | 105 | 0.481 |
106 | 106 | 0.283 |
107 | 107 | 0.198 |
108 | 108 | 0.876 |
109 | 109 | 0.662 |
11 | 11 | 0.895 |
110 | 110 | 0.274 |
111 | 111 | 0.323 |
112 | 112 | 0.393 |
113 | 113 | 0.391 |
114 | 114 | 0.295 |
115 | 115 | 0.957 |
116 | 116 | 0.255 |
117 | 117 | 0.729 |
118 | 118 | 0.412 |
119 | 119 | 0.489 |
12 | 12 | 0.944 |
120 | 120 | 0.261 |
121 | 121 | 0.59 |
122 | 122 | 0.438 |
123 | 123 | 0.251 |
124 | 124 | 0.445 |
125 | 125 | 0.919 |
126 | 126 | 0.614 |
127 | 127 | 0.138 |
128 | 128 | 0.72 |
129 | 129 | 0.637 |
13 | 13 | 5.41498e-4 |
130 | 130 | 0.269 |
131 | 131 | 0.413 |
132 | 132 | 0.985 |
133 | 133 | 0.473 |
134 | 134 | 0.975 |
135 | 135 | 0.808 |
136 | 136 | 0.0563 |
137 | 137 | 0.3 |
138 | 138 | 0.133 |
139 | 139 | 0.572 |
14 | 14 | 0.89 |
140 | 140 | 0.548 |
141 | 141 | 0.424 |
142 | 142 | 0.857 |
143 | 143 | 0.43 |
144 | 144 | 0.131 |
145 | 145 | 0.129 |
146 | 146 | 0.665 |
147 | 147 | 0.749 |
148 | 148 | 0.992 |
149 | 149 | 0.404 |
15 | 15 | 0.677 |
150 | 150 | 0.188 |
151 | 151 | 0.36 |
152 | 152 | 0.248 |
153 | 153 | 0.922 |
154 | 154 | 0.582 |
155 | 155 | 0.126 |
156 | 156 | 5.13022e-36 |
157 | 157 | 0.755 |
158 | 158 | 0.105 |
159 | 159 | 0.0158 |
160 | 160 | 0.289 |
161 | 161 | 0.354 |
162 | 162 | 0.813 |
163 | 163 | 0.552 |
164 | 164 | 0.256 |
165 | 165 | 0.04 |
166 | 166 | 0.55 |
167 | 167 | 0.769 |
168 | 168 | 0.705 |
169 | 169 | 0.00493 |
17 | 17 | 0.59 |
18 | 18 | 0.039 |
19 | 19 | 0.228 |
2 | 2 | 0.665 |
20 | 20 | 0.198 |
21 | 21 | 0.399 |
22 | 22 | 0.309 |
23 | 23 | 0.0448 |
24 | 24 | 0.497 |
25 | 25 | 0.613 |
26 | 26 | 0.0831 |
27 | 27 | 0.271 |
28 | 28 | 0.341 |
29 | 29 | 0.369 |
3 | 3 | 0.895 |
30 | 30 | 0.0869 |
31 | 31 | 0.816 |
32 | 32 | 0.412 |
33 | 33 | 0.235 |
34 | 34 | 0.472 |
35 | 35 | 0.263 |
36 | 36 | 0.0893 |
37 | 37 | 0.0745 |
38 | 38 | 0.105 |
39 | 39 | 0.993 |
4 | 4 | 0.478 |
40 | 40 | 0.00554 |
41 | 41 | 0.993 |
42 | 42 | 0.549 |
43 | 43 | 0.581 |
44 | 44 | 0.996 |
45 | 45 | 0.256 |
46 | 46 | 0.917 |
47 | 47 | 0.748 |
48 | 48 | 0.923 |
49 | 49 | 0.371 |
5 | 5 | 0.13 |
50 | 50 | 0.626 |
51 | 51 | 0.892 |
52 | 52 | 0.6 |
53 | 53 | 0.421 |
54 | 54 | 0.976 |
55 | 55 | 0.232 |
56 | 56 | 0.972 |
57 | 57 | 0.426 |
58 | 58 | 0.91 |
59 | 59 | 0.153 |
6 | 6 | 0.0459 |
60 | 60 | 0.437 |
61 | 61 | 0.721 |
62 | 62 | 0.531 |
63 | 63 | 0.435 |
64 | 64 | 0.521 |
65 | 65 | 0.0461 |
66 | 66 | 0.367 |
67 | 67 | 0.951 |
68 | 68 | 0.67 |
69 | 69 | 0.23 |
7 | 7 | 0.223 |
70 | 70 | 0.168 |
71 | 71 | 0.302 |
72 | 72 | 0.107 |
73 | 73 | 0.112 |
74 | 74 | 0.944 |
75 | 75 | 0.294 |
76 | 76 | 0.461 |
77 | 77 | 0.915 |
78 | 78 | 0.0875 |
79 | 79 | 0.497 |
8 | 8 | 0.889 |
80 | 80 | 0.0309 |
81 | 81 | 0.447 |
82 | 82 | 0.705 |
83 | 83 | 0.989 |
84 | 84 | 0.442 |
85 | 85 | 0.157 |
86 | 86 | 0.768 |
87 | 87 | 2.81429e-6 |
88 | 88 | 0.376 |
89 | 89 | 0.105 |
9 | 9 | 0.38 |
90 | 90 | 0.906 |
91 | 91 | 0.242 |
92 | 92 | 0.463 |
93 | 93 | 0.292 |
94 | 94 | 0.865 |
95 | 95 | 0.187 |
96 | 96 | 0.485 |
97 | 97 | 0.217 |
98 | 98 | 0.714 |
99 | 99 | 0.342 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11213
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011393 (mouse heart- neonate N00 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)