FFCP PHASE1:Mm9::chr18:76401546..76401613,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17126 | |EntrezGene=17126 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q3V3E0 | |UniProt=Q3V3E0 | ||
|association_with_transcript=0bp_to_uc008fqn.1_5end | |association_with_transcript=0bp_to_uc008fqn.1_5end | ||
|cluster_id=chr18:76401546..76401613,+ | |||
|description=CAGE_peak_1_at_Smad2_5end | |description=CAGE_peak_1_at_Smad2_5end | ||
|id=chr18:76401546..76401613,+ | |id=chr18:76401546..76401613,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!2.63e-08!23;UBERON:0000974!2.63e-08!23;UBERON:0004807!2.63e-08!23;UBERON:0005058!2.63e-08!23;UBERON:0003351!2.63e-08!23;UBERON:0009113!2.63e-08!23;UBERON:0003295!2.63e-08!23;UBERON:0009722!2.63e-08!23;UBERON:0005562!2.63e-08!23;UBERON:0007690!2.63e-08!23;UBERON:0006562!1.55e-07!24;UBERON:0001557!1.55e-07!24;UBERON:0001042!1.55e-07!24;UBERON:0008814!1.55e-07!24;UBERON:0009145!1.55e-07!24;UBERON:0000072!2.37e-07!27;UBERON:0003408!2.41e-07!24;UBERON:0000065!8.93e-07!41 | |ontology_enrichment_uberon=UBERON:0002370!2.63e-08!23;UBERON:0000974!2.63e-08!23;UBERON:0004807!2.63e-08!23;UBERON:0005058!2.63e-08!23;UBERON:0003351!2.63e-08!23;UBERON:0009113!2.63e-08!23;UBERON:0003295!2.63e-08!23;UBERON:0009722!2.63e-08!23;UBERON:0005562!2.63e-08!23;UBERON:0007690!2.63e-08!23;UBERON:0006562!1.55e-07!24;UBERON:0001557!1.55e-07!24;UBERON:0001042!1.55e-07!24;UBERON:0008814!1.55e-07!24;UBERON:0009145!1.55e-07!24;UBERON:0000072!2.37e-07!27;UBERON:0003408!2.41e-07!24;UBERON:0000065!8.93e-07!41 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,1.07e-09,43;UBERON:0007811,2.00e-09,36;UBERON:0002370,2.63e-08,23;UBERON:0000974,2.63e-08,23;UBERON:0004807,2.63e-08,23;UBERON:0005058,2.63e-08,23;UBERON:0003351,2.63e-08,23;UBERON:0009113,2.63e-08,23;UBERON:0003295,2.63e-08,23;UBERON:0009722,2.63e-08,23;UBERON:0005562,2.63e-08,23;UBERON:0007690,2.63e-08,23;UBERON:0006562,1.55e-07,24;UBERON:0001557,1.55e-07,24;UBERON:0001042,1.55e-07,24;UBERON:0008814,1.55e-07,24;UBERON:0009145,1.55e-07,24;UBERON:0000072,2.37e-07,27;UBERON:0003408,2.41e-07,24;UBERON:0000065,8.93e-07,41 | |||
|phase1_expression=19.0577128054705,25.4752047576734,21.8399634906977,40.5302043151152,34.561805366298,14.4376173844225,19.1562365288331,32.0225842135109,33.9300820385517,41.8975502116368,27.9085288207573,35.099749957948,27.5633175189241,31.3839244684201,10.3264026162855,13.5658429151183,8.39474253753776,32.1771408665402,32.7703496317716,25.0389894560838,12.246233781754,19.5603173865744,20.6347833419759,18.2391361984484,17.8939239232393,17.8011908875656,15.9381938578858,16.8067561494993,22.4227634958521,20.4144405105544,17.7384408524244,9.52546010189447,12.916360539276,15.8481681015439,16.7533939455739,14.6286487915473,19.3960888449251,45.201416119586,31.253413780952,42.4054232618777,46.4702875544501,45.7640474922159,61.1743044819254,10.5753327099485,10.9487085717076,7.15832333430558,3.12956537739216,3.48840250208714,3.07560655828261,2.91644848611425,3.77963338388479,5.75010257459886,29.5297386661616,26.1130371124084,33.9454737133889,10.0331180054019,11.1748041576115,9.28209766099396,22.2548106945558,30.6814767977779,27.8885817542719,3.72728985276045,3.55717918444456,6.74924787961049,2.96659908770092,4.9733608046227,2.39680088414724,3.45796474789399,24.1596796678753,20.520902626417,17.6672967535161,12.2829923293636,8.39300455616131,29.1528102131591,29.8079414866715,33.0918763179608,14.3150645299205,16.4716666129892,17.9719643909805,26.7729164092293,25.8910031394819,29.1711487511786,10.8881369610539,21.3849791812038,19.4053774676549,15.6153150301044,17.0846016958924,18.2671456908795,26.3527152799481,21.6890377506474,19.7107852317141,8.60423876981386,17.6792546764015,6.47643829965381,5.84798775702902,10.3046184032387,15.308441794361,12.2709832256202,8.83272415649754,7.77347063922748,21.9715734851622,19.2489716121477,50.9610479413291,35.5533351576666,19.9171757730317,22.8023878927589,17.6933555755174,13.9304333257253,30.8136081540134,21.3756680253348,20.6447538851702,19.7902560902892,20.0635482612771,24.4170677695249,26.5750478126693,18.2216557428029,25.7082766443749,16.0505286181102,19.4614321428972,12.2942805960031,11.7046004784009,15.0311328471919,7.45567044872489,16.6885054296582,14.4518227701284,19.4147361958529,25.2809912707492,25.1959147017231,23.1267813272978,20.5213175984607,16.0125210986519,27.3926487606044,18.9468509009581,13.5529192385075,14.9607392082883,13.6282660976916,15.8869407606493,15.6752782968717,18.4487613656583,11.995185785529,30.0578223243846,27.8181546364502,34.2118046630164,39.0325478194502,36.1954175485064,41.8931865331459,32.139691523987,20.4375662883822,23.9280472155455,29.5005485061798,22.5217438929855,16.6588756644957,24.190110682627,13.5818344943645,22.6360350048738,20.1024609486678,24.5774615559632,19.0437451264889,23.017243451043,19.6769483908727,24.6252362980151,22.1476335597048,21.7805156738393,20.0699516382352,20.8260602397961,20.9280550275367,17.4377710909752,16.3471479314037,18.5952630402233,15.2675741593559,12.5656654796076,12.2807989437279,13.8316572633362,8.72341721942416,13.6688466566683,22.6390147234426,20.4859645449955,16.1314845664762,24.3148605610167,23.4559038579043,22.6806731926884,21.5801371346977,20.4587800337281,24.5391057685201,17.0830462156024,19.9285735216053,24.1281800448259,24.0737331169792,22.0309418444606,13.4822911298133,18.8040103390984,16.1304431336037,14.2250925714811,19.9934897067025,20.2873924211545,19.5505274731502,22.304536024277,23.0746847439148,17.8327034690406,20.0749801252259,16.9558626068685,13.9438795231635,12.1545577105731,15.6834399373128,12.9728936774714,13.0420025183215,16.8373900752457,14.9529839046498,18.3330613282622,14.6725030099913,18.321280625579,10.7078951143352,27.3159592401974,13.0249331683976,17.1620720213008,10.3557339958316,10.225652570749,14.473305640901,16.9972934953276,23.4969350595401,25.096606372072,20.0299201214722,19.7139808562342,20.938282180227,15.7108802984769,18.1474292507753,23.8029067600348,26.1328333785554,18.4967531642685,21.6299575424774,15.7143333497965,16.9239398540369,13.5712155545345,9.79030230873677,13.277635371514,11.5893433447988,16.215609588767,15.3547309435786,8.85248705034047,10.856249869788,27.1337068697981,24.2072021463916,29.2975820916607,31.0659437338318,31.1918143715352,30.0061122636162,21.4549671887694,22.7959569170823,24.1125544547379,14.1381379225595,21.7168330368651,16.5601011410547,19.220661203722,16.6619824202261,3.98235415019888,19.1796702562435,16.0231485191318,13.3909606626688,9.15435867930396,18.4461088766356,12.9214146584111,17.0860852854428,17.4683715408513,11.6933600436252,6.32511651449993,11.3449097573006,19.4050575279659,26.8291030106652,14.4881725836685,19.7190072229065,17.3793428969428,16.4099312193905,14.8094118541909,10.9607381681256,16.192347856396,23.7251919367479,12.7906470871878,20.1161228588606,25.3499149912572,20.5667074005011,23.7550964566242,25.6059803602296,19.2377352175701,14.0923229527987,16.0618627949982,15.6854019652049,18.5194527369712,13.1857919903284,17.3601669205702,17.3871411636957,27.5365056590046,28.2701933693789,29.1601944727334,12.4107180341965,22.4598555442606,19.9253077784312,20.7370254377858,17.7725051612298,21.8362563746178,17.262636337257,14.6296616633845,15.9671124610258,22.1641604328966,9.94142900939081,9.58277995763124,21.9789322684649,21.1786867785085,19.6395700227488,23.2487682259916,26.8640239530337,23.2367332518593,18.6192270326849,26.5294141397048,8.93861247056222,11.5212002503146,28.1249897359079,12.1635129174099,18.1798394181744,18.5786776858247,21.3041767844303,27.8153896693771,25.1208489496735,30.2763530707883,29.7851027347035,27.9678980423849,31.6594221329679,29.3348221026655,29.5370353835811,32.258025002113,13.6038230169127,16.2049745963067,20.365045450351,20.1461539636894,35.1605061138587,13.5131382324851,18.8646172995283,13.7195762610602,20.0628841614145,8.471277639256,16.1113832777512,16.6139698897425,10.998603669996,14.3867329151835,17.3740596399631,21.6007200074178,16.2115633160719,25.3759749031155,18.1216109113137,25.9468368960442,34.7151639858897,25.2685736516119,17.2605769118489,15.3017608718427,14.8913241844511,15.5572709461131,16.6888396363504,16.0459604795908,18.9522908822848,16.2226751929753,15.6559863350443,14.7017166727715,16.1343384060271,16.3116731833942,21.9095097990214,19.4685667587357,16.976011400806,21.4284668417719,20.6078488188156,16.4577241144999,16.8602015851371,18.3595866259437,18.6043413289381,18.0690010397435,18.7844429519522,17.5610853957862,18.414879800649,18.8767718245748,19.0788372363631,17.9138877367503,16.9427709685969,20.4615521584845,14.7189999126668,15.8183421004536,15.4882558321526,18.0127338502964,20.6276211886366,17.0246615541271,17.6473135295612,13.216466630364 | |phase1_expression=19.0577128054705,25.4752047576734,21.8399634906977,40.5302043151152,34.561805366298,14.4376173844225,19.1562365288331,32.0225842135109,33.9300820385517,41.8975502116368,27.9085288207573,35.099749957948,27.5633175189241,31.3839244684201,10.3264026162855,13.5658429151183,8.39474253753776,32.1771408665402,32.7703496317716,25.0389894560838,12.246233781754,19.5603173865744,20.6347833419759,18.2391361984484,17.8939239232393,17.8011908875656,15.9381938578858,16.8067561494993,22.4227634958521,20.4144405105544,17.7384408524244,9.52546010189447,12.916360539276,15.8481681015439,16.7533939455739,14.6286487915473,19.3960888449251,45.201416119586,31.253413780952,42.4054232618777,46.4702875544501,45.7640474922159,61.1743044819254,10.5753327099485,10.9487085717076,7.15832333430558,3.12956537739216,3.48840250208714,3.07560655828261,2.91644848611425,3.77963338388479,5.75010257459886,29.5297386661616,26.1130371124084,33.9454737133889,10.0331180054019,11.1748041576115,9.28209766099396,22.2548106945558,30.6814767977779,27.8885817542719,3.72728985276045,3.55717918444456,6.74924787961049,2.96659908770092,4.9733608046227,2.39680088414724,3.45796474789399,24.1596796678753,20.520902626417,17.6672967535161,12.2829923293636,8.39300455616131,29.1528102131591,29.8079414866715,33.0918763179608,14.3150645299205,16.4716666129892,17.9719643909805,26.7729164092293,25.8910031394819,29.1711487511786,10.8881369610539,21.3849791812038,19.4053774676549,15.6153150301044,17.0846016958924,18.2671456908795,26.3527152799481,21.6890377506474,19.7107852317141,8.60423876981386,17.6792546764015,6.47643829965381,5.84798775702902,10.3046184032387,15.308441794361,12.2709832256202,8.83272415649754,7.77347063922748,21.9715734851622,19.2489716121477,50.9610479413291,35.5533351576666,19.9171757730317,22.8023878927589,17.6933555755174,13.9304333257253,30.8136081540134,21.3756680253348,20.6447538851702,19.7902560902892,20.0635482612771,24.4170677695249,26.5750478126693,18.2216557428029,25.7082766443749,16.0505286181102,19.4614321428972,12.2942805960031,11.7046004784009,15.0311328471919,7.45567044872489,16.6885054296582,14.4518227701284,19.4147361958529,25.2809912707492,25.1959147017231,23.1267813272978,20.5213175984607,16.0125210986519,27.3926487606044,18.9468509009581,13.5529192385075,14.9607392082883,13.6282660976916,15.8869407606493,15.6752782968717,18.4487613656583,11.995185785529,30.0578223243846,27.8181546364502,34.2118046630164,39.0325478194502,36.1954175485064,41.8931865331459,32.139691523987,20.4375662883822,23.9280472155455,29.5005485061798,22.5217438929855,16.6588756644957,24.190110682627,13.5818344943645,22.6360350048738,20.1024609486678,24.5774615559632,19.0437451264889,23.017243451043,19.6769483908727,24.6252362980151,22.1476335597048,21.7805156738393,20.0699516382352,20.8260602397961,20.9280550275367,17.4377710909752,16.3471479314037,18.5952630402233,15.2675741593559,12.5656654796076,12.2807989437279,13.8316572633362,8.72341721942416,13.6688466566683,22.6390147234426,20.4859645449955,16.1314845664762,24.3148605610167,23.4559038579043,22.6806731926884,21.5801371346977,20.4587800337281,24.5391057685201,17.0830462156024,19.9285735216053,24.1281800448259,24.0737331169792,22.0309418444606,13.4822911298133,18.8040103390984,16.1304431336037,14.2250925714811,19.9934897067025,20.2873924211545,19.5505274731502,22.304536024277,23.0746847439148,17.8327034690406,20.0749801252259,16.9558626068685,13.9438795231635,12.1545577105731,15.6834399373128,12.9728936774714,13.0420025183215,16.8373900752457,14.9529839046498,18.3330613282622,14.6725030099913,18.321280625579,10.7078951143352,27.3159592401974,13.0249331683976,17.1620720213008,10.3557339958316,10.225652570749,14.473305640901,16.9972934953276,23.4969350595401,25.096606372072,20.0299201214722,19.7139808562342,20.938282180227,15.7108802984769,18.1474292507753,23.8029067600348,26.1328333785554,18.4967531642685,21.6299575424774,15.7143333497965,16.9239398540369,13.5712155545345,9.79030230873677,13.277635371514,11.5893433447988,16.215609588767,15.3547309435786,8.85248705034047,10.856249869788,27.1337068697981,24.2072021463916,29.2975820916607,31.0659437338318,31.1918143715352,30.0061122636162,21.4549671887694,22.7959569170823,24.1125544547379,14.1381379225595,21.7168330368651,16.5601011410547,19.220661203722,16.6619824202261,3.98235415019888,19.1796702562435,16.0231485191318,13.3909606626688,9.15435867930396,18.4461088766356,12.9214146584111,17.0860852854428,17.4683715408513,11.6933600436252,6.32511651449993,11.3449097573006,19.4050575279659,26.8291030106652,14.4881725836685,19.7190072229065,17.3793428969428,16.4099312193905,14.8094118541909,10.9607381681256,16.192347856396,23.7251919367479,12.7906470871878,20.1161228588606,25.3499149912572,20.5667074005011,23.7550964566242,25.6059803602296,19.2377352175701,14.0923229527987,16.0618627949982,15.6854019652049,18.5194527369712,13.1857919903284,17.3601669205702,17.3871411636957,27.5365056590046,28.2701933693789,29.1601944727334,12.4107180341965,22.4598555442606,19.9253077784312,20.7370254377858,17.7725051612298,21.8362563746178,17.262636337257,14.6296616633845,15.9671124610258,22.1641604328966,9.94142900939081,9.58277995763124,21.9789322684649,21.1786867785085,19.6395700227488,23.2487682259916,26.8640239530337,23.2367332518593,18.6192270326849,26.5294141397048,8.93861247056222,11.5212002503146,28.1249897359079,12.1635129174099,18.1798394181744,18.5786776858247,21.3041767844303,27.8153896693771,25.1208489496735,30.2763530707883,29.7851027347035,27.9678980423849,31.6594221329679,29.3348221026655,29.5370353835811,32.258025002113,13.6038230169127,16.2049745963067,20.365045450351,20.1461539636894,35.1605061138587,13.5131382324851,18.8646172995283,13.7195762610602,20.0628841614145,8.471277639256,16.1113832777512,16.6139698897425,10.998603669996,14.3867329151835,17.3740596399631,21.6007200074178,16.2115633160719,25.3759749031155,18.1216109113137,25.9468368960442,34.7151639858897,25.2685736516119,17.2605769118489,15.3017608718427,14.8913241844511,15.5572709461131,16.6888396363504,16.0459604795908,18.9522908822848,16.2226751929753,15.6559863350443,14.7017166727715,16.1343384060271,16.3116731833942,21.9095097990214,19.4685667587357,16.976011400806,21.4284668417719,20.6078488188156,16.4577241144999,16.8602015851371,18.3595866259437,18.6043413289381,18.0690010397435,18.7844429519522,17.5610853957862,18.414879800649,18.8767718245748,19.0788372363631,17.9138877367503,16.9427709685969,20.4615521584845,14.7189999126668,15.8183421004536,15.4882558321526,18.0127338502964,20.6276211886366,17.0246615541271,17.6473135295612,13.216466630364 | ||
|short_description=p1@Smad2 | |short_description=p1@Smad2 | ||
}} | }} |
Latest revision as of 17:48, 1 October 2015
Short description: | p1@Smad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smad2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc008fqn.1_5end |
EntrezGene: | Smad2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anterior region of body | 1.07e-09 | 43 |
craniocervical region | 2.00e-09 | 36 |
thymus | 2.63e-08 | 23 |
neck | 2.63e-08 | 23 |
respiratory system epithelium | 2.63e-08 | 23 |
hemolymphoid system gland | 2.63e-08 | 23 |
pharyngeal epithelium | 2.63e-08 | 23 |
thymic region | 2.63e-08 | 23 |
pharyngeal gland | 2.63e-08 | 23 |
entire pharyngeal arch endoderm | 2.63e-08 | 23 |
thymus primordium | 2.63e-08 | 23 |
early pharyngeal endoderm | 2.63e-08 | 23 |
pharynx | 1.55e-07 | 24 |
upper respiratory tract | 1.55e-07 | 24 |
chordate pharynx | 1.55e-07 | 24 |
pharyngeal arch system | 1.55e-07 | 24 |
pharyngeal region of foregut | 1.55e-07 | 24 |
segment of respiratory tract | 2.37e-07 | 27 |
gland of gut | 2.41e-07 | 24 |
respiratory tract | 8.93e-07 | 41 |