FFCP PHASE1:Hg19::chr13:37446984..37446995,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4093 | |EntrezGene=4093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=6774 | |HGNC=6774 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-142bp_to_AK311686_5end | |association_with_transcript=-142bp_to_AK311686_5end | ||
|cluster_id=chr13:37446984..37446995,- | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_13_at_SMAD9_5end | |description=CAGE_peak_13_at_SMAD9_5end | ||
|id=chr13:37446984..37446995,- | |id=chr13:37446984..37446995,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.84e-34;1!UBERON:0008801;3.61e-34;1!UBERON:0007297;1.07e-17;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001829;1.04e-66;2!UBERON:0001044;3.84e-50;6!UBERON:0003293;3.84e-50;6!UBERON:0003294;3.84e-50;6!UBERON:0010047;3.84e-50;6!UBERON:0003408;3.84e-50;6!UBERON:0000167;3.84e-50;6!UBERON:0001736;1.84e-34;1!UBERON:0001831;3.61e-34;1!UBERON:0001567;3.61e-34;1!UBERON:0001301;7.06e-34;1!UBERON:0001041;4.67e-22;14!UBERON:0004089;7.67e-18;2!UBERON:0000007;1.07e-17;2!UBERON:0001954;1.07e-17;2!UBERON:0003022;1.07e-17;2!UBERON:0002421;1.07e-17;2!UBERON:0002600;1.07e-17;2!UBERON:0000161;1.75e-16;19!UBERON:0000166;1.75e-16;19!UBERON:0006947;2.89e-12;3!UBERON:0004054;2.89e-12;3!UBERON:0000165;1.92e-11;28!UBERON:0002365;3.38e-10;31!UBERON:0002330;3.38e-10;31!UBERON:0003296;1.57e-09;4!UBERON:0010133;1.57e-09;4!UBERON:0005904;1.57e-09;4!UBERON:0004921;1.36e-08;33!UBERON:0000349;7.01e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.04e-66,2;UBERON:0001044,3.84e-50,6;UBERON:0003293,3.84e-50,6;UBERON:0003294,3.84e-50,6;UBERON:0010047,3.84e-50,6;UBERON:0000167,3.84e-50,6;UBERON:0001736,1.84e-34,1;UBERON:0006298,1.84e-34,1;UBERON:0001831,3.61e-34,1;UBERON:0001567,3.61e-34,1;UBERON:0008801,3.61e-34,1;UBERON:0001301,5.05e-34,1;UBERON:0003408,1.68e-30,10;UBERON:0004089,7.67e-18,2;UBERON:0001954,1.07e-17,2;UBERON:0003022,1.07e-17,2;UBERON:0002421,1.07e-17,2;UBERON:0002600,1.07e-17,2;UBERON:0000007,1.27e-17,2;UBERON:0000166,2.38e-14,22;UBERON:0006947,2.59e-12,3;UBERON:0004054,2.59e-12,3;UBERON:0000165,4.48e-11,29;UBERON:0000930,4.48e-11,29;UBERON:0007023,7.60e-11,114;UBERON:0002365,2.08e-10,31;UBERON:0002330,2.08e-10,31;UBERON:0005904,1.44e-09,4;UBERON:0002530,1.52e-09,59;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0002553,2.88e-09,61;UBERON:0000161,4.60e-09,36;UBERON:0000349,7.01e-08,5;UBERON:0001444,7.75e-07,49 | |||
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| ||
|short_description=p13@SMAD9 | |short_description=p13@SMAD9 | ||
}} | }} |
Latest revision as of 06:14, 17 September 2015
Short description: | p13@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SMAD9_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | -142bp_to_AK311686_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.04e-66 | 2 |
saliva-secreting gland | 3.84e-50 | 6 |
gland of oral region | 3.84e-50 | 6 |
gland of foregut | 3.84e-50 | 6 |
oral gland | 3.84e-50 | 6 |
oral cavity | 3.84e-50 | 6 |
submandibular gland | 1.84e-34 | 1 |
submandibular gland primordium | 1.84e-34 | 1 |
parotid gland | 3.61e-34 | 1 |
cheek | 3.61e-34 | 1 |
parotid gland primordium | 3.61e-34 | 1 |
epididymis | 5.05e-34 | 1 |
gland of gut | 1.68e-30 | 10 |
midface | 7.67e-18 | 2 |
Ammon's horn | 1.07e-17 | 2 |
lobe parts of cerebral cortex | 1.07e-17 | 2 |
hippocampal formation | 1.07e-17 | 2 |
limbic lobe | 1.07e-17 | 2 |
pituitary gland | 1.27e-17 | 2 |
oral opening | 2.38e-14 | 22 |
male genital duct | 2.59e-12 | 3 |
internal male genitalia | 2.59e-12 | 3 |
mouth | 4.48e-11 | 29 |
stomodeum | 4.48e-11 | 29 |
adult organism | 7.60e-11 | 114 |
exocrine gland | 2.08e-10 | 31 |
exocrine system | 2.08e-10 | 31 |
duct of male reproductive system | 1.44e-09 | 4 |
gland | 1.52e-09 | 59 |
gland of diencephalon | 1.70e-09 | 4 |
neuroendocrine gland | 1.70e-09 | 4 |
anatomical cavity | 2.88e-09 | 61 |
orifice | 4.60e-09 | 36 |
limbic system | 7.01e-08 | 5 |
subdivision of head | 7.75e-07 | 49 |